Thalamic inflammation after brain trauma is associated with thalamo-cortical white matter damage

Background Traumatic brain injury can trigger chronic neuroinflammation, which may predispose to neurodegeneration. Animal models and human pathological studies demonstrate persistent inflammation in the thalamus associated with axonal injury, but this relationship has never been shown in vivo. Findings Using [11C]-PK11195 positron emission tomography, a marker of microglial activation, we previously demonstrated thalamic inflammation up to 17 years after traumatic brain injury. Here, we use diffusion MRI to estimate axonal injury and show that thalamic inflammation is correlated with thalamo-cortical tract damage. Conclusions These findings support a link between axonal damage and persistent inflammation after brain injury

Rare earth elements (REEs) in the tropical South Atlantic and quantitative deconvolution of their non-conservative behavior

This study presents new concentration measurements of dissolved REEs (dREEs) along a full-depth east-west section across the tropical South Atlantic (~12°S), and uses these data to investigate the oceanic cycling of the REEs. Enrichment of dREEs, associated with the redox cycling of Fe-Mn oxides, is observed in the oxygen minimum zone (OMZ) off the African shelf. For deeper-waters, a multi-parameter mixing model was developed to deconvolve the relative importance of physical transport (i.e. water mass mixing) from biogeochemical controls on the dREE distribution in the deep Atlantic. This approach enables chemical processes involved in REE cycling, not apparent from the measurements alone, to be distinguished and quantified. Results show that the measured dREE concentrations below ~1000 m are dominantly controlled (>75%) by preformed REE concentrations resulting from water mass mixing. This result indicates that the linear correlation between dREEs and dissolved Si observed in Atlantic deep waters results from the dominantly conservative behaviour of these tracers, rather than from similar chemical processes influencing both dREEs and Si. Minor addition of dREEs (~10% of dNd and ~5% of dYb) is observed in the deep (>~4000 m) Brazil Basin, resulting from either remineralization of particles in-situ or along the flow path. Greater addition of dREEs (up to 25% for dNd and 20% for dYb) is found at ~1500 m and below ~4000 m in the Angola Basin near the African continental margin. Cerium anomalies suggest that different sources are responsible for these dREE addition plumes. The 1500 m excess is most likely attributed to dREE release from Fe oxides, whereas the 4000 m excess may be due to remineralization of calcite. Higher particulate fluxes and a more sluggish ocean circulation in the Angola Basin may explain why the dREE excesses in this basin are significantly higher than that observed in the Brazil Basin. Hydrothermal venting over the mid-Atlantic ridge acts as a regional net sink for light REEs, but has little influence on the net budget of heavy REEs. The combination of dense REE measurements with water mass deconvolution is shown to provide quantitative assessment of the relative roles of physical and biogeochemical processes in the oceanic cycling of REEs.X.-Y. Zheng was supported by the Clarendon Scholarship, the Exeter College Mandarin Scholarship from University of Oxford, the Chinese Student Awards from the Great Britain–China Educational Trust (GBCET) and W Wing Yip and Brothers bursaries.This is the author accepted manuscript. The final version is available from Elsevier via http://dx.doi.org/10.1016/j.gca.2016.01.01

Optimization of the dilute maleic acid pretreatment of wheat straw

This is an Open Access article distributed under the terms of the Creative Commons Attribution Licens

Plantation clear-fell patches benefit heathland arthropods

Plantation forests constitute a significant amount of the wooded area in many parts of the globe. However, the extent of biological provision conferred by plantation forest depends on regional conservation priorities and biogeographical context. Here, we evaluate the arthropod biodiversity in a chronosequence of pine plantation (clear-felled, 1, 3, 5, 7, 9, 13, 21-years) in the largest lowland conifer forest in the UK. We compare the assemblage within 37 plantation stands and eight important open habitat remnants in a formerly heathland dominated region. We also assess the configuration and potential isolation of ephemeral open early growth stage habitat across a 60-year plantation rotation. Carabid and spider assemblages changed throughout the sampled chronosequence. In the early growth stages (1–7 years) before canopy closure, arthropod assemblages contained many individuals and species associated with dry-open habitats, greater numbers of rare species than closed canopy plantation and had similar composition (non-metric multidimensional scaling) to heathland samples. Early growth stages and heathlands primarily differed in the additional presence of generalist species in the plantation. Species associated with woodland increased in abundance as the plantation aged, but remained far less numerous than dry-open or generalist species. The spatial distribution of young growth stages across the rotation cycle was significantly clustered in the early and late rotation phases. Plantation landscapes often support high species richness but we highlight their value for vulnerable heathland biodiversity early in the rotation cycle. To increase plantation value regional conservation priorities should be supported with appropriate consideration of growth stage configuration across the full rotation

A siltstone reaction front related to CO2- and sulfur-bearing fluids: Integrating quantitative elemental mapping with reactive transport modeling

For the purpose of geological carbon storage, it is necessary to understand the long-term effects of introducing CO2 and sulfur-species into saline aquifers. CO2 stripped from the flue gas during the carbon capture process may contain trace SO2 and H2S and it may be economically beneficial to inject S-bearing CO2 rather than costly purified CO2. Further, reactions between the S-bearing CO2, formation brines and formation minerals will increase pH and promote further dissolution and precipitation reactions. To investigate this we model reactions in a natural analogue where CO2 and SO4-H2S bearing fluids have reacted with clay-rich siltstones. In the Mid-Jurassic Carmel formation in a cap rock to a natural CO2-bearing reservoir at Green River, Utah, a 3.1 mm wide bleached alteration zone is observed at the uppermost contact between a primary gypsum bed and red siltstone. Gypsum at the contact is ∼1 mm thick and shows elongate fibers perpendicular to the siltstone surface, suggesting fluid flow along the contact. Mineralogical concentrations, analyzed by Quantitative Evaluation of Minerals by SCANning electron microscopy (QEMSCAN), show the altered siltstone region comprises two main zones, a 0.8 mm-wide hematite-poor, dolomite-poor and illite-rich region adjacent to the gypsum bed and a 2.3 mm-wide hematite-poor, dolomite-poor, illite-poor region adjacent to the hematite alteration front. A one-component analytical solution to reactive-diffusive transport for the bleached zone implies it took less than 20 years to form before the fluid self-sealed, and that literature hematite dissolution rates between 10-8 and 10-7 mol/m2/s are valid for likely diffusivities. Multi-component reactive-diffusive transport equilibrium modeling for the full phase assemblage, conducted with PHREEQC, suggests dissolution of hematite and dolomite and precipitation of illite over similar short timescales. Reaction progress with CO2-bearing, SO4-rich and minor H2S-bearing fluids is shown to be much faster than with CO2-poor, SO4-rich with minor H2S-earing fluids. The substantial buffering capacity of mineral reactions demonstrated by the S and CO2–related alteration of hematite-bearing siltstones at the Green River CO2 accumulation implies that corrosion of such a cap rock are, at worst, comparable to the 10,000-year timescales needed for carbon storage.Funding for Carbon Storage research at the University of Cambridge was provided by the Natural Environment Research Council (NERC) to the CRIUS consortium (NE/F004699/1), Shell Global Solutions International, and the U.K. Department of Energy and Climate Change (DECC) through a CCS Innovation grant. A.M. was supported by an EPSRC doctoral training grant

First Steps towards Underdominant Genetic Transformation of Insect Populations

The idea of introducing genetic modifications into wild populations of insects to stop them from spreading diseases is more than 40 years old. Synthetic disease refractory genes have been successfully generated for mosquito vectors of dengue fever and human malaria. Equally important is the development of population transformation systems to drive and maintain disease refractory genes at high frequency in populations. We demonstrate an underdominant population transformation system in Drosophila melanogaster that has the property of being both spatially self-limiting and reversible to the original genetic state. Both population transformation and its reversal can be largely achieved within as few as 5 generations. The described genetic construct {Ud} is composed of two genes; (1) a UAS-RpL14.dsRNA targeting RNAi to a haploinsufficient gene RpL14 and (2) an RNAi insensitive RpL14 rescue. In this proof-of-principle system the UAS-RpL14.dsRNA knock-down gene is placed under the control of an Actin5c-GAL4 driver located on a different chromosome to the {Ud} insert. This configuration would not be effective in wild populations without incorporating the Actin5c-GAL4 driver as part of the {Ud} construct (or replacing the UAS promoter with an appropriate direct promoter). It is however anticipated that the approach that underlies this underdominant system could potentially be applied to a number of species. Figure

Systematic review with meta-analysis: the accuracy of serological tests to support the diagnosis of coeliac disease

BACKGROUND: There is growing support for a biopsy avoidant approach to diagnose coeliac disease in both children and adults, using a serological diagnosis instead. AIMS: To assess the diagnostic accuracy of serological tests for coeliac disease in adults and children. METHODS: Seven electronic databases were searched between January 1990 and August 2020. Eligible diagnostic studies evaluated the accuracy of serological tests for coeliac disease against duodenal biopsy. Risk of bias assessment was performed using QUADAS-2. Bivariate random-effects meta-analyses were used to estimate serology sensitivity and specificity at the most commonly reported thresholds. RESULTS: 113 studies (n = 28,338) were included, all in secondary care populations. A subset of studies were included in meta-analyses due to variations in diagnostic thresholds. Summary sensitivity and specificity of immunoglobulin A (IgA) anti-tissue transglutaminase were 90.7% (95% confidence interval: 87.3%, 93.2%) and 87.4% (84.4%, 90.0%) in adults (5 studies) and 97.7% (91.0%, 99.4%) and 70.2% (39.3%, 89.6%) in children (6 studies); and of IgA endomysial antibodies were 88.0% (75.2%, 94.7%) and 99.6% (92.3%, 100%) in adults (5 studies) and 94.5% (88.9%, 97.3%) and 93.8% (85.2%, 97.5%) in children (5 studies). CONCLUSIONS: Anti-tissue transglutaminase sensitivity appears to be sufficient to rule out coeliac disease in children. The high specificity of endomysial antibody in adults supports its use to rule in coeliac disease. This evidence underpins the current development of clinical guidelines for a serological diagnosis of coeliac disease. Studies in primary care are needed to evaluate serological testing strategies in this setting

Fast fluorescence microscopy for imaging the dynamics of embryonic development

Live imaging has gained a pivotal role in developmental biology since it increasingly allows real-time observation of cell behavior in intact organisms. Microscopes that can capture the dynamics of ever-faster biological events, fluorescent markers optimal for in vivo imaging, and, finally, adapted reconstruction and analysis programs to complete data flow all contribute to this success. Focusing on temporal resolution, we discuss how fast imaging can be achieved with minimal prejudice to spatial resolution, photon count, or to reliably and automatically analyze images. In particular, we show how integrated approaches to imaging that combine bright fluorescent probes, fast microscopes, and custom post-processing techniques can address the kinetics of biological systems at multiple scales. Finally, we discuss remaining challenges and opportunities for further advances in this field