GPU-based Online Track Reconstruction for the ALICE TPC in Run 3 with Continuous Read-Out

In LHC Run 3, ALICE will increase the data taking rate significantly to 50 kHz continuous read-out of minimum bias Pb-Pb collisions. The reconstruction strategy of the online-offline computing upgrade foresees a first synchronous online reconstruction stage during data taking enabling detector calibration and data compression, and a posterior calibrated asynchronous reconstruction stage. Many new challenges arise, among them continuous TPC read-out, more overlapping collisions, no a priori knowledge of the primary vertex and of location-dependent calibration in the synchronous phase, identification of low-momentum looping tracks, and sophisticated raw data compression. The tracking algorithm for the Time Projection Chamber (TPC) will be based on a Cellular Automaton and the Kalman filter. The reconstruction shall run online, processing 50 times more collisions per second than today, while yielding results comparable to current offline reconstruction. Our TPC track finding leverages the potential of hardware accelerators via the OpenCL and CUDA APIs in a shared source code for CPUs and GPUs for both reconstruction stages. We give an overview of the status of Run 3 tracking including performance on processors and GPUs and achieved compression ratios.Comment: 8 pages, 7 figures, contribution to CHEP 2018 conferenc

Track Reconstruction in the ALICE TPC using GPUs for LHC Run 3

In LHC Run 3, ALICE will increase the data taking rate significantly to continuous readout of 50 kHz minimum bias Pb-Pb collisions. The reconstruction strategy of the online offline computing upgrade foresees a first synchronous online reconstruction stage during data taking enabling detector calibration, and a posterior calibrated asynchronous reconstruction stage. We present a tracking algorithm for the Time Projection Chamber (TPC), the main tracking detector of ALICE. The reconstruction must yield results comparable to current offline reconstruction and meet the time constraints like in the current High Level Trigger (HLT), processing 50 times as many collisions per second as today. It is derived from the current online tracking in the HLT, which is based on a Cellular automaton and the Kalman filter, and we integrate missing features from offline tracking for improved resolution. The continuous TPC readout and overlapping collisions pose new challenges: conversion to spatial coordinates and the application of time- and location dependent calibration must happen in between of track seeding and track fitting while the TPC occupancy increases five-fold. The huge data volume requires a data reduction factor of 20, which imposes additional requirements: the momentum range must be extended to identify low-pt looping tracks and a special refit in uncalibrated coordinates improves the track model entropy encoding. Our TPC track finding leverages the potential of hardware accelerators via the OpenCL and CUDA APIs in a shared source code for CPUs, GPUs, and both reconstruction stages. Porting more reconstruction steps like the remainder of the TPC reconstruction and tracking for other detectors will shift the computing balance from traditional processors to GPUs.Comment: 13 pages, 10 figures, proceedings to Connecting The Dots Workshop, Seattle, 201

Time Optimal Control of Coupled Qubits Under Non-Stationary Interactions

In this article, we give a complete characterization of all the unitary transformations that can be synthesized in a given time for a system of coupled spin-1/2 in presence of general time varying coupling tensor. Our treatment is quite general and our results help to characterize the reachable set at all times for a class of bilinear control systems with time varying drift and unbounded control amplitude. These results are of fundamental interest in geometric control theory and have applications to control of coupled spins in solid state NMR spectroscopy.Comment: 4 page

Kerr effect as a tool for the investigation of dynamic heterogeneities

We propose a dynamic Kerr effect experiment for the distinction between dynamic heterogeneous and homogeneous relaxation in glassy systems. The possibility of this distinction is due to the inherent nonlinearity of the Kerr effect signal. We model the slow reorientational molecular motion in supercooled liquids in terms of non-inertial rotational diffusion. The Kerr effect response, consisting of two terms, is calculated for heterogeneous and for homogeneous variants of the stochastic model. It turns out that the experiment is able to distinguish between the two scenarios. We furthermore show that exchange between relatively 'slow' and 'fast' environments does not affect the possibility of frequency-selective modifications. It is demonstrated how information about changes in the width of the relaxation time distribution can be obtained from experimental results.Comment: 23 pages incl. 6 figures accepted for publication in The Journal of Chemical Physic

Conformationally selective multidimensional chemical shift ranges in proteins from a PACSY database purged using intrinsic quality criteria

We have determined refined multidimensional chemical shift ranges for intra-residue correlations ([superscript 13]C–[superscript 13]C, [superscript 15]N–[superscript 13]C, etc.) in proteins, which can be used to gain type-assignment and/or secondary-structure information from experimental NMR spectra. The chemical-shift ranges are the result of a statistical analysis of the PACSY database of >3000 proteins with 3D structures (1,200,207 [superscript 13]C chemical shifts and >3 million chemical shifts in total); these data were originally derived from the Biological Magnetic Resonance Data Bank. Using relatively simple non-parametric statistics to find peak maxima in the distributions of helix, sheet, coil and turn chemical shifts, and without the use of limited “hand-picked” data sets, we show that ~94 % of the [superscript 13]C NMR data and almost all [superscript 15]N data are quite accurately referenced and assigned, with smaller standard deviations (0.2 and 0.8 ppm, respectively) than recognized previously. On the other hand, approximately 6 % of the [superscript 13]C chemical shift data in the PACSY database are shown to be clearly misreferenced, mostly by ca. −2.4 ppm. The removal of the misreferenced data and other outliers by this purging by intrinsic quality criteria (PIQC) allows for reliable identification of secondary maxima in the two-dimensional chemical-shift distributions already pre-separated by secondary structure. We demonstrate that some of these correspond to specific regions in the Ramachandran plot, including left-handed helix dihedral angles, reflect unusual hydrogen bonding, or are due to the influence of a following proline residue. With appropriate smoothing, significantly more tightly defined chemical shift ranges are obtained for each amino acid type in the different secondary structures. These chemical shift ranges, which may be defined at any statistical threshold, can be used for amino-acid type assignment and secondary-structure analysis of chemical shifts from intra-residue cross peaks by inspection or by using a provided command-line Python script (PLUQin), which should be useful in protein structure determination. The refined chemical shift distributions are utilized in a simple quality test (SQAT) that should be applied to new protein NMR data before deposition in a databank, and they could benefit many other chemical-shift based tools.National Institutes of Health (U.S.) (Grant GM066976

Interactive Learning of Probabilistic Decision Making by Service Robots with Multiple Skill Domains

This thesis makes a contribution to autonomous service robots, centered around two aspects. The first is modeling decision making in the face of incomplete information on top of diverse basic skills of a service robot. Second, based on such a model, it is investigated, how to transfer complex decision-making knowledge into the system. Interactive learning, naturally from both demonstrations of human teachers and in interaction with objects, yields decision-making models applicable by the robot

Ion and polymer dynamics in polymer electrolytes PPO-LiClO4: II. 2H and 7Li NMR stimulated-echo experiment

We use 2H NMR stimulated-echo spectroscopy to measure two-time correlation functions characterizing the polymer segmental motion in polymer electrolytes PPO-LiClO4 near the glass transition temperature Tg. To investigate effects of the salt on the polymer dynamics, we compare results for different ether oxygen to lithium ratios, namely, 6:1, 15:1, 30:1 and infinity. For all compositions, we find nonexponential correlation functions, which can be described by a Kohlrausch function. The mean correlation times show quantitatively that an increase of the salt concentration results in a strong slowing down of the segmental motion. Consistently, for the high 6:1 salt concentration, a high apparent activation energy E_a=4.1eV characterizes the temperature dependence of the mean correlation times at Tg < T< 1.1T_g, while smaller values E_a=2.5eV are observed for moderate salt contents. The correlation functions are most nonexponential for 15:1 PPO-LiClO4, whereas the stretching is reduced for higher and lower salt concentrations. A similar dependence of the correlation functions on the evolution time in the presence and in the absence of ions indicates that addition of salt hardly affects the reorientational mechanism. For all compositions, mean jump angles of about 15 degree characterize the segmental reorientation. In addition, comparison of results from 2H and 7Li NMR stimulated-echo experiments suggests a coupling of ion and polymer dynamics in 15:1 PPO-LiClO4.Comment: 14 pages, 12 figure

Gas hydrate occurrences along the Haida Gwaii margin - Constraints on the geothermal regime and implications for fluid flow

Seismic-reflection data along the Haida Gwaii margin collected from 1967 to 2013 were used to identify gas hydrate–related bottom-simulating reflectors (BSRs). The BSRs occur along the Queen Charlotte Terrace only, within more strongly folded and tectonically deformed sedimentary ridges. The BSRs are absent within well-bedded and sediment-filled minibasins. The BSR is modeled as the base of the phase boundary of the methane hydrate (structure I) stability zone and is used to estimate geothermal gradients. The P-wave velocity structure required to convert observed depths of the BSR in two-way time to meters below seafloor was constrained from ocean-bottom seismometers. The BSR-derived gradients are lower than data from heat-probe deployments in the region, as well as predicted values from previous modeling of the large-scale tectonic thermal regime. Lower values of the BSR-derived thermal gradients may be due to topographic effects across the ridges where BSRs were observed. The previously identified landward decrease in thermal gradients across the terrace was also identified to a lesser extent from the BSRs, in accordance with the effects of oblique convergence of the Pacific plate with the North American plate. Geothermal gradients decreased from south to north by a factor of two, which is likely an effect of plate cooling due to an increase in age of the underlying plate (ca. 8 Ma off southern Haida Gwaii to ca. 12 Ma at Dixon Entrance) as well as the fact that sediments triple in thickness over the same distance. This may be due to downward flexure of the underlying crust during transpression and/or a high flux of sediments through Dixon Entrance

Die Spektren der Protonen aus (d,p)-Reaktionen an schweren Kernenbei Deuteronenenergien unter 12 MeV.

The proton spectra of the (d,p)-reactions on heavy nuclei show, in addition to the low energy continuum and the gross structure at higher energies, a pronounced proton group. The relative intensity of the proton group increases with decreasing energy of the primary deuterons. The dependence of the spectra on the atomic number of the target and the energy dependence and angular distribution for gold have been measured. The results are explained in terms of the properties of the nuclear surface