A Systematic Search over Deep Convolutional Neural Network Architectures for Screening Chest Radiographs

Chest radiographs are primarily employed for the screening of pulmonary and cardio-/thoracic conditions. Being undertaken at primary healthcare centers, they require the presence of an on-premise reporting Radiologist, which is a challenge in low and middle income countries. This has inspired the development of machine learning based automation of the screening process. While recent efforts demonstrate a performance benchmark using an ensemble of deep convolutional neural networks (CNN), our systematic search over multiple standard CNN architectures identified single candidate CNN models whose classification performances were found to be at par with ensembles. Over 63 experiments spanning 400 hours, executed on a 11:3 FP32 TensorTFLOPS compute system, we found the Xception and ResNet-18 architectures to be consistent performers in identifying co-existing disease conditions with an average AUC of 0.87 across nine pathologies. We conclude on the reliability of the models by assessing their saliency maps generated using the randomized input sampling for explanation (RISE) method and qualitatively validating them against manual annotations locally sourced from an experienced Radiologist. We also draw a critical note on the limitations of the publicly available CheXpert dataset primarily on account of disparity in class distribution in training vs. testing sets, and unavailability of sufficient samples for few classes, which hampers quantitative reporting due to sample insufficiency.Comment: accepted in EMBC 2020, 4 pages+2 page Appendi

Cannabis as homeopathic medicine in extreme dilutions: Thermal analysis for their differentiation and action on a protein

Cannabis indica and C. sativa have been used in homeopathy in extreme dilutions, called potencies, for therapeutic purposes since 1841. The purpose of the present study is to see whether Cannabis dilutions have specific levels of free water molecules which characterize other homeopathic potencies. The second objective is to see whether Cannabis mother tincture (MT) and potencies act on the binding sites of a protein. The three potencies 8, 14 and 32 cH were prepared from Cannabis mother tincture (MT) by successive dilution followed by succussion in 8, 14 and 32 steps, respectively. The 3 potencies of diluent medium 90% EtOH were similarly prepared. Each potency was analysed by differential scanning calorimetry (DSC) to determine the free water level in it. The drug potencies and unpotentised EtOH were tested for their binding reaction with a protein human serum albumin (HSA) by isothermal calorimetry (ITC). MTs and the potencies differ from each other and also from water control and EtOH with respect to free water content as revealed by DSC. MTs, their potencies and EtOH bind to HSA showing difference in thermodynamic parameters in terms of stoichiometry, binding constant, change in enthalpy, entropy and Gibbs free energy. Potencies may initiate their individual effect through binding with a protein thereby leading to subsequent biochemical events inside the cell

Cannabis as homeopathic medicine in extreme dilutions: Thermal analysis for their differentiation and action on a protein

506-513Cannabis indica and C. sativa have been used in homeopathy in extreme dilutions, called potencies, for therapeutic purposes since 1841. The purpose of the present study is to see whether Cannabis dilutions have specific levels of free water molecules which characterize other homeopathic potencies. The second objective is to see whether Cannabis mother tincture (MT) and potencies act on the binding sites of a protein. The three potencies 8, 14 and 32 cH were prepared from Cannabis mother tincture (MT) by successive dilution followed by succussion in 8, 14 and 32 steps, respectively. The 3 potencies of diluent medium 90% EtOH were similarly prepared. Each potency was analysed by differential scanning calorimetry (DSC) to determine the free water level in it. The drug potencies and unpotentised EtOH were tested for their binding reaction with a protein human serum albumin (HSA) by isothermal calorimetry (ITC). MTs and the potencies differ from each other and also from water control and EtOH with respect to free water content as revealed by DSC. MTs, their potencies and EtOH bind to HSA showing difference in thermodynamic parameters in terms of stoichiometry, binding constant, change in enthalpy, entropy and Gibbs free energy. Potencies may initiate their individual effect through binding with a protein thereby leading to subsequent biochemical events inside the cell

Immunohistochemical evaluation of prime molecules in cervical lesions towards assessment of malignant potentiality

Objective: A comparative immunohistochemical evaluation of p63, CD105, and E-cadherin expression pattern in histopathologically confirmed normal cervical epithelium (NCM), dysplastic cervical epithelium (DYS) and squamous cell carcinoma (SCC) of uterine cervix towards assessing malignant potentiality of the precancerous condition. Materials and Methods: The biopsies from cervical mucosa (normal, dysplasia, and cancer) were studied by routine hematoxylin and eosin (H and E) and by immunohistochemistry for p63, E-cadherin, and CD105 expression. The expressions of these molecules were assessed in a semiquantitative way by (i) counting p63 cell population and distribution, (ii) intensity scoring of E-cadherin along the expression path, and (iii) measuring CD105 expression density. Result: p63+ cells were highest in carcinomas followed by dysplasia and normal. An abrupt increase in CD105 expression was observed through change of normal to dysplasia and cancer. A decrease in membranous E-cadherin expression was noticed in the transformation from normal to precancer and cancers. Conclusion: The malignant potential of the dysplastic conditions is likely to be correlated with upregulation in p63 and CD105 expression and a simultaneous downregulation of membranous E-cadherin

Integrated cervical smear screening using liquid based cytology and bioimpedance analysis

Objective: To minimize the false negativity in cervical cancer screening with Papanicolaou (Pap) test, there is a need to explore novel cytological technique and identification of unique and important cellular features from the perspectives of morphological as well as biophysical properties. Materials and Methods: The present study explores the feasibility of low-cost cervical monolayer techniques in extracting cyto-pathological features to classify normal and abnormal conditions. The cervical cells were also analyzed in respect to their electrical bioimpedance. Result: The results show that newly developed monolayer technique for cervical smears is cost effective, capable of cyto-pathological evaluation. Electrical bioimpedance study evidenced distinction between abnormal and normal cell population at more than two order of magnitude difference. Conclusion: The integration of bioimpedance observation along with the proposed low-cost monolayer technology could increase the efficiency of the cervical screening to a greater extent thereby reducing the rates of faulty diagnosis

Influence of rank and macerals on the burnout behaviour of pulverized Indian coal

The combustion behaviour of coal is significantly influenced by its rank and maceral and microlithotype compositions. Different macerals, due to their distinct and unique physical properties and chemical makeup, have different burning characteristics. This paper deals with the burning behaviour of coals of Indian origin by thermo gravimetric analysis (TGA) and in drop tube furnace (DTF) with particular emphasis on the role of macerals and their associations. Four coals of different rank and petrographic makeup, along with their two density fractions, with enriched vitrinite and inertinites, respectively,were studied in both TGA and DTF. The burnout behaviour was estimated from the chemical analyses of the char samples collected from the DTF. The burning characteristics of one of the coals deviate from the trend expected with the variations of rank. The behaviour of the density fractions in DTF was found to be different from that observed in TGA analyses. An attempt has been made to correlate the burnout with the petrographic macerals and microlithotypes present in the coals. The morphology of the residual chars indicates the contributions of the inertinites towards the formation of cenospheres and network types of reactive chars. The superior burning behaviour of the higher density inertinite-rich fractions over the raw coals and also some vitrinite-rich fractions indicate the better reactivity of the inertinites towards combustion