Generation of Inhomogeneous Acoustic Waves Using an Array of Loudspeakers

In previous studies it has been shown that pressure fields created by inhomogeneous sound waves (waves which decay in a direction perpendicular to their propagation direction) are able to transmit energy into objects more effectively than ones created by conventional sound waves. This behavior may be useful in the detection of hidden explosive threats. To explore this, a device capable of constructing inhomogeneous waves is being developed. The proposed device is an acoustic array consisting of several high-frequency speakers. The speakers are independently driven to construct a desired inhomogeneous pressure field on a target surface. Inhomogeneous pressure fields were reconstructed across a span of decay parameters and standoff distances. Results show low root-mean-square errors at realistic levels of power consumption. These results imply that the device can recreate desired inhomogeneous pressure fields with high enough accuracy and low enough power consumption to test the energy transmission properties of inhomogeneous waves on mock explosives, which may be useful in applications related to improvised explosive device detection and defeat

Two new families (Acari: Alicorhagiidae and Platyhelminthes: Prorhynchidae) reported for the Hungarian fauna from leaf litter in the Bükk Mountains

Two new members of the Hungarian fauna are reported, both of them were collected in beech forest leaf litter in the Bükk Mountains, North-East Hungary: Alicorhagia fragilis Berlese, 1910 (Arthropoda: Arachnida: Acari: Sarcopti- formes: Endeostigmata: Alicorhagiidae) and Geocentrophora baltica (Kennel, 1883) (Platyhelm inthes: Rhabditophora: Trepaxonemata: Amplimatricata: 'Lecithoepitheliata': Prorhynchida: Prorhynchidae). The families Alicorhagiidae and Prorhynchidae both represent new taxa in the fauna of the country

Liver steatosis and metabolic dysfunction-associated fatty liver disease among HIV-positive and negative adults in urban Zambia.

INTRODUCTION The growing importance of non-communicable diseases (NCDs) and high HIV prevalence in urban African settings may increase the burden of metabolic dysfunction-associated fatty liver disease (MAFLD). We assessed liver steatosis among HIV-positive and negative adults in urban Zambia. METHODS Adults 30 years and older who were newly diagnosed with HIV, or tested HIV-negative at two primary care clinics in Lusaka, Zambia, were assessed for liver steatosis. Cardiometabolic data were collected through comprehensive clinical and laboratory assessments. Transient elastography was performed to measure controlled-attenuation parameter (≥248 dB/m). We used multivariable logistic regression models to determine the factors associated with the presence of steatosis. RESULTS We enrolled 381 patients, including 154 (40%) antiretroviral therapy-naïve people living with HIV (PLWH) with a median CD4+ count of 247 cells/mm3 and a mean body mass index (BMI) of 23.8 kg/m2. Liver steatosis was observed in 10% of participants overall and was more common among HIV-negative adults than in PLWH (15% vs 3%). The proportion of patients with steatosis was 25% among obese (BMI ≥30 kg/m2) participants, 12% among those overweight (BMI 25-29.9 kg/m2), and 7% among those with a BMI 25 kg/m2 and liver steatosis was attenuated after adjustment for potential confounders (aOR 1.96, 95% CI 0.88-4.40). Overall, 21 (9%) participants without HIV and 4 (3%) with HIV met the criteria for MAFLD. Among individuals with liver steatosis, 65% (95% CI 49% to 80%) fulfilled criteria of MAFLD, whereas 15 (39%) of them had elevated transaminases and 3 (8%) F2-F4 fibrosis. CONCLUSIONS The prevalence of liver steatosis in this urban cohort of HIV-positive and negative adults in Zambia was low, despite a large proportion of patients with high BMI and central obesity. Our study is among the first to report data on MAFLD among adults in Africa, demonstrating that metabolic risk factors are key drivers of liver steatosis and supporting the adoption of the criteria for MAFLD in African populations

Implications of the Ammonia Distribution on Jupiter from 1 to 100 Bars as Measured by the Juno Microwave Radiometer

The latitude-altitude map of ammonia mixing ratio shows an ammonia-rich zone at 0-5degN, with mixing ratios of 320-340 ppm, extending from 40-60 bars up to the ammonia cloud base at 0.7 bars. Ammonia-poor air occupies a belt from 5-20degN. We argue that downdrafts as well as updrafts are needed in the 0-5degN zone to balance the upward ammonia flux. Outside the 0-20degN region, the belt-zone signature is weaker. At latitudes out to +/-40deg, there is an ammonia-rich layer from cloud base down to 2 bars which we argue is caused by falling precipitation. Below, there is an ammonia-poor layer with a minimum at 6 bars. Unanswered questions include how the ammonia-poor layer is maintained, why the belt-zone structure is barely evident in the ammonia distribution outside 0-20degN, and how the internal heat is transported through the ammonia-poor layer to the ammonia cloud base

Implications of the ammonia distribution on Jupiter from 1 to 100 bars as measured by the Juno microwave radiometer

The latitude‐altitude map of ammonia mixing ratio shows an ammonia‐rich zone at 0–5°N, with mixing ratios of 320–340 ppm, extending from 40–60 bars up to the ammonia cloud base at 0.7 bars. Ammonia‐poor air occupies a belt from 5–20°N. We argue that downdrafts as well as updrafts are needed in the 0–5°N zone to balance the upward ammonia flux. Outside the 0–20°N region, the belt‐zone signature is weaker. At latitudes out to ±40°, there is an ammonia‐rich layer from cloud base down to 2 bars that we argue is caused by falling precipitation. Below, there is an ammonia‐poor layer with a minimum at 6 bars. Unanswered questions include how the ammonia‐poor layer is maintained, why the belt‐zone structure is barely evident in the ammonia distribution outside 0–20°N, and how the internal heat is transported through the ammonia‐poor layer to the ammonia cloud base.Key PointsThe altitude‐latitude map of Jupiter’s ammonia reveals unexpected evidence of large‐scale circulation down at least to the 50‐bar levelA narrow equatorial band is the only region where ammonia‐rich air from below the 50‐bar level can reach the ammonia cloud at 0.7 barsAt higher latitudes the ammonia‐rich air appears to be blocked by a layer of ammonia‐poor air between 3 and 15 barsPlain Language SummaryJupiter is a fluid planet. It has no solid continents to stabilize the weather. Scientists have wondered what the weather is like below the clouds because it might explain why storms last for decades or hundreds of years on Jupiter. The Juno spacecraft is the first chance we have had to take a look beneath the clouds, and this is the first analysis of the Juno data. The surprise is that, deep down, Jupiter’s weather looks a lot like Earth’s, with ammonia gas taking the place of water vapor. There is a band of high humidity at the equator and bands of low humidity on either side of the equator, like Earth’s tropical and subtropical bands. What is different is that the bands go much deeper than anyone expected and this is all taking place on a planet without an ocean or a solid surface.Peer Reviewedhttps://deepblue.lib.umich.edu/bitstream/2027.42/138332/1/grl56217_am.pdfhttps://deepblue.lib.umich.edu/bitstream/2027.42/138332/2/grl56217.pd

First radial velocity results from the MINiature Exoplanet Radial Velocity Array (MINERVA)

The MINiature Exoplanet Radial Velocity Array (MINERVA) is a dedicated observatory of four 0.7m robotic telescopes fiber-fed to a KiwiSpec spectrograph. The MINERVA mission is to discover super-Earths in the habitable zones of nearby stars. This can be accomplished with MINERVA's unique combination of high precision and high cadence over long time periods. In this work, we detail changes to the MINERVA facility that have occurred since our previous paper. We then describe MINERVA's robotic control software, the process by which we perform 1D spectral extraction, and our forward modeling Doppler pipeline. In the process of improving our forward modeling procedure, we found that our spectrograph's intrinsic instrumental profile is stable for at least nine months. Because of that, we characterized our instrumental profile with a time-independent, cubic spline function based on the profile in the cross dispersion direction, with which we achieved a radial velocity precision similar to using a conventional "sum-of-Gaussians" instrumental profile: 1.8 m s$^{-1}$ over 1.5 months on the RV standard star HD 122064. Therefore, we conclude that the instrumental profile need not be perfectly accurate as long as it is stable. In addition, we observed 51 Peg and our results are consistent with the literature, confirming our spectrograph and Doppler pipeline are producing accurate and precise radial velocities.Comment: 22 pages, 9 figures, submitted to PASP, Peer-Reviewed and Accepte

Genetic Background Can Result in a Marked or Minimal Effect of Gene Knockout (GPR55 and CB2 Receptor) in Experimental Autoimmune Encephalomyelitis Models of Multiple Sclerosis

PMCID: PMC379391

Novel computational methods for increasing PCR primer design effectiveness in directed sequencing

<p>Abstract</p> <p>Background</p> <p>Polymerase chain reaction (PCR) is used in directed sequencing for the discovery of novel polymorphisms. As the first step in PCR directed sequencing, effective PCR primer design is crucial for obtaining high-quality sequence data for target regions. Since current computational primer design tools are not fully tuned with stable underlying laboratory protocols, researchers may still be forced to iteratively optimize protocols for failed amplifications after the primers have been ordered. Furthermore, potentially identifiable factors which contribute to PCR failures have yet to be elucidated. This inefficient approach to primer design is further intensified in a high-throughput laboratory, where hundreds of genes may be targeted in one experiment.</p> <p>Results</p> <p>We have developed a fully integrated computational PCR primer design pipeline that plays a key role in our high-throughput directed sequencing pipeline. Investigators may specify target regions defined through a rich set of descriptors, such as Ensembl accessions and arbitrary genomic coordinates. Primer pairs are then selected computationally to produce a minimal amplicon set capable of tiling across the specified target regions. As part of the tiling process, primer pairs are computationally screened to meet the criteria for success with one of two PCR amplification protocols. In the process of improving our sequencing success rate, which currently exceeds 95% for exons, we have discovered novel and accurate computational methods capable of identifying primers that may lead to PCR failures. We reveal the laboratory protocols and their associated, empirically determined computational parameters, as well as describe the novel computational methods which may benefit others in future primer design research.</p> <p>Conclusion</p> <p>The high-throughput PCR primer design pipeline has been very successful in providing the basis for high-quality directed sequencing results and for minimizing costs associated with labor and reprocessing. The modular architecture of the primer design software has made it possible to readily integrate additional primer critique tests based on iterative feedback from the laboratory. As a result, the primer design software, coupled with the laboratory protocols, serves as a powerful tool for low and high-throughput primer design to enable successful directed sequencing.</p

Hepatitis B infection, viral load and resistance in HIV-infected patients in Mozambique and Zambia

BACKGROUND: Few data on the virological determinants of hepatitis B virus (HBV) infection are available from southern Africa. METHODS: We enrolled consecutive HIV-infected adult patients initiating antiretroviral therapy (ART) at two urban clinics in Zambia and four rural clinics in Northern Mozambique between May 2013 and August 2014. HBsAg screening was performed using the Determine ® rapid test. Quantitative real-time PCR and HBV sequencing were performed in HBsAg-positive patients. Risk factors for HBV infection were evaluated using Chi-square and Mann-Whitney tests and associations between baseline characteristics and high level HBV replication explored in multivariable logistic regression. RESULTS: Seventy-eight of 1,032 participants in Mozambique (7.6%, 95% confidence interval [CI]: 6.1-9.3) and 90 of 797 in Zambia (11.3%, 95% CI: 9.3-13.4) were HBsAg-positive. HBsAg-positive individuals were less likely to be female compared to HBsAg-negative ones (52.3% vs. 66.1%, p20,000 UI/mL). HBsAg-positive individuals had higher levels of ALT and AST compared to HBsAg-negative ones (both p<0.001). In multivariable analyses, male sex (adjusted odds ratio: 2.59, 95% CI: 1.22-5.53) and CD4 cell count below 200/μl (2.58, 1.20-5.54) were associated with high HBV DNA. HBV genotypes A1 (58.8%) and E (38.2%) were most prevalent. Four patients had probable resistance to lamivudine and/or entecavir. CONCLUSION: One half of HBsAg-positive patients demonstrated high HBV viremia, supporting the early initiation of tenofovir-containing ART in HIV/HBV-coinfected adults