Isotopic signals in an agricultural watershed suggest denitrification is locally intensive in riparian areas but extensive in upland soils

© The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Sigler, W. A., Ewing, S. A., Wankel, S. D., Jones, C. A., Leuthold, S., Brookshire, E. N. J., & Payn, R. A. Isotopic signals in an agricultural watershed suggest denitrification is locally intensive in riparian areas but extensive in upland soils. Biogeochemistry, 158, (2022): 251–268, https://doi.org/10.1007/s10533-022-00898-9.Nitrogen loss from cultivated soils threatens the economic and environmental sustainability of agriculture. Nitrate (NO3−) derived from nitrification of nitrogen fertilizer and ammonified soil organic nitrogen may be lost from soils via denitrification, producing dinitrogen gas (N2) or the greenhouse gas nitrous oxide (N2O). Nitrate that accumulates in soils is also subject to leaching loss, which can degrade water quality and make NO3− available for downstream denitrification. Here we use patterns in the isotopic composition of NO3− observed from 2012 to 2017 to characterize N loss to denitrification within soils, groundwater, and stream riparian corridors of a non-irrigated agroecosystem in the northern Great Plains (Judith River Watershed, Montana, USA). We find evidence for denitrification across these domains, expressed as a positive linear relationship between δ15N and δ18O values of NO3−, as well as increasing δ15N values with decreasing NO3− concentration. In soils, isotopic evidence of denitrification was present during fallow periods (no crop growing), despite net accumulation of NO3− from the nitrification of ammonified soil organic nitrogen. We combine previous results for soil NO3− mass balance with δ15N mass balance to estimate denitrification rates in soil relative to groundwater and streams. Substantial denitrification from soils during fallow periods may be masked by nitrification of ammonified soil organic nitrogen, representing a hidden loss of soil organic nitrogen and an under-quantified flux of N to the atmosphere. Globally, cultivated land spends ca. 50% of time in a fallow condition; denitrification in fallow soils may be an overlooked but globally significant source of agricultural N2O emissions, which must be reduced along-side other emissions to meet Paris Agreement goals for slowing global temperature increase.National Institute of Food and Agriculture, 2011–51130-31121, S. A. Ewing, 2011, S. A. Ewing, 2016–67026-25067, S. A. Ewing, Montana State University Extension, Montana Fertilizer Advisory Committee, Montana Agricultural Experiment Station, Montana State University Vice President of Research, Montana State University College of Agriculture, Montana Institute on Ecosystems, NSF EPSCoR, OIA-1757351, S. A. Ewing, OIA-1443108, S. A. Ewing, EPS-110134, S. A. Ewing

A Multidisciplinary Evaluation of a Virtually Supervised Home-Based High-Intensity Interval Training Intervention in People With Type 1 Diabetes.

OBJECTIVE: Adopt a multidisciplinary approach to evaluate a virtually supervised home-based high-intensity interval training (Home-HIT) intervention in people with type 1 diabetes. RESEARCH DESIGN AND METHODS: Eleven individuals with type 1 diabetes (seven women; age 30 ± 3 years; VO2peak 2.5 ± 0.2 L/min; duration of diabetes 10 ± 2 years) completed 6 weeks of Home-HIT. A heart rate monitor and mobile phone application were used to provide feedback to the participants and research team on exercise intensity (compliance) and adherence. RESULTS: Training adherence was 95 ± 2%, and compliance was 99 ± 1%. Home-HIT increased VO2peak by 7% (P = 0.017) and decreased insulin dose by 13% (P = 0.012). Blood glucose concentration did not change from baseline to immediately or 1 h post Home-HIT. Qualitative perceptions of Home-HIT and the virtual-monitoring system were positive, supporting that the intervention successfully removed exercise barriers in people with type 1 diabetes. CONCLUSIONS: Virtually monitored Home-HIT resulted in high adherence alongside increased VO2peak and decreased insulin dose

Point-of-care serological assays for delayed SARS-CoV-2 case identification among health-care workers in the UK: a prospective multicentre cohort study

BACKGROUND: Health-care workers constitute a high-risk population for acquisition of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection. Capacity for acute diagnosis via PCR testing was limited for individuals with mild to moderate SARS-CoV-2 infection in the early phase of the COVID-19 pandemic and a substantial proportion of health-care workers with suspected infection were not tested. We aimed to investigate the performance of point-of-care and laboratory serology assays and their utility in late case identification, and to estimate SARS-CoV-2 seroprevalence. METHODS: We did a prospective multicentre cohort study between April 8 and June 12, 2020, in two phases. Symptomatic health-care workers with mild to moderate symptoms were eligible to participate 14 days after onset of COVID-19 symptoms, as per the Public Health England (PHE) case definition. Health-care workers were recruited to the asymptomatic cohort if they had not developed PHE-defined COVID-19 symptoms since Dec 1, 2019. In phase 1, two point-of-care lateral flow serological assays, the Onsite CTK Biotech COVID-19 split IgG/IgM Rapid Test (CTK Bitotech, Poway, CA, USA) and the Encode SARS-CoV-2 split IgM/IgG One Step Rapid Test Device (Zhuhai Encode Medical Engineering, Zhuhai, China), were evaluated for performance against a laboratory immunoassay (EDI Novel Coronavirus COVID-19 IgG ELISA kit [Epitope Diagnostics, San Diego, CA, USA]) in 300 samples from health-care workers and 100 pre-COVID-19 negative control samples. In phase 2 (n=6440), serosurveillance was done among 1299 (93·4%) of 1391 health-care workers reporting symptoms, and in a subset of asymptomatic health-care workers (405 [8·0%] of 5049). FINDINGS: There was variation in test performance between the lateral flow serological assays; however, the Encode assay displayed reasonable IgG sensitivity (127 of 136; 93·4% [95% CI 87·8-96·9]) and specificity (99 of 100; 99·0% [94·6-100·0]) among PCR-proven cases and good agreement (282 of 300; 94·0% [91·3-96·7]) with the laboratory immunoassay. By contrast, the Onsite assay had reduced sensitivity (120 of 136; 88·2% [95% CI 81·6-93·1]) and specificity (94 of 100; 94·0% [87·4-97·8]) and agreement (254 of 300; 84·7% [80·6-88·7]). Five (7%) of 70 PCR-positive cases were negative across all assays. Late changes in lateral flow serological assay bands were recorded in 74 (9·3%) of 800 cassettes (35 [8·8%] of 400 Encode assays; 39 [9·8%] of 400 Onsite assays), but only seven (all Onsite assays) of these changes were concordant with the laboratory immunoassay. In phase 2, seroprevalence among the workforce was estimated to be 10·6% (95% CI 7·6-13·6) in asymptomatic health-care workers and 44·7% (42·0-47·4) in symptomatic health-care workers. Seroprevalence across the entire workforce was estimated at 18·0% (95% CI 17·0-18·9). INTERPRETATION: Although a good positive predictive value was observed with both lateral flow serological assays and ELISA, this agreement only occurred if the pre-test probability was modified by a strict clinical case definition. Late development of lateral flow serological assay bands would preclude postal strategies and potentially home testing. Identification of false-negative results among health-care workers across all assays suggest caution in interpretation of IgG results at this stage; for now, testing is perhaps best delivered in a clinical setting, supported by government advice about physical distancing. FUNDING: None

Glycemic responses to strenuous training in male professional cyclists with type 1 diabetes: a prospective observational study

Introduction This prospective observational study sought to establish the glycemic, physiological and dietary demands of strenuous exercise training as part of a 9-day performance camp in a professional cycling team with type 1 diabetes (T1D).Research design and methods Sixteen male professional cyclists with T1D on multiple daily injections (age: 27±4 years; duration of T1D: 11±5 years; body mass index: 22±2 kg/m2; glycated hemoglobin: 7%±1% (50±6 mmol/mol); maximum rate of oxygen consumption: 73±4 mL/kg/min) performed road cycle sessions (50%–90% of the anaerobic threshold, duration 1–6 hours) over 9 consecutive days. Glycemic (Dexcom G6), nutrition and physiological data were collected throughout. Glycemic data were stratified into predefined glycemic ranges and mapped alongside exercise physiology and nutritional parameters, as well as split into daytime and night-time phases for comparative analysis. Data were assessed by means of analysis of variance and paired t-tests. A p value of ≤0.05 (two-tailed) was statistically significant.Results Higher levels of antecedent hypoglycemia in the nocturnal hours were associated with greater time spent in next-day hypoglycemia overall (p=0.003) and during exercise (p=0.019). Occurrence of nocturnal hypoglycemia was associated with over three times the risk of next-day hypoglycemia (p<0.001) and a twofold risk of low glucose during cycling (p<0.001). Moreover, there was trend for a greater amount of time spent in mild hypoglycemia during the night compared with daytime hours (p=0.080).Conclusion The higher prevalence of nocturnal hypoglycemia was associated with an increased risk of next-day hypoglycemia, which extended to cycle training sessions. These data highlight the potential need for additional prebed carbohydrates and/or insulin dose reduction strategies around exercise training in professional cyclists with T1D.Trial registration number DRKS00019923

Discovery of a Potent and Selective DDR1 Receptor Tyrosine Kinase Inhibitor

The DDR1 receptor tyrosine kinase is activated by matrix collagens and has been implicated in numerous cellular functions such as proliferation, differentiation, adhesion, migration, and invasion. Here we report the discovery of a potent and selective DDR1 inhibitor, DDR1-IN-1, and present the 2.2 Å DDR1 co-crystal structure. DDR1-IN-1 binds to DDR1 in the ‘DFG-out’ conformation and inhibits DDR1 autophosphorylation in cells at submicromolar concentrations with good selectivity as assessed against a panel of 451 kinases measured using the KinomeScan technology. We identified a mutation in the hinge region of DDR1, G707A, that confers >20-fold resistance to the ability of DDR1-IN-1 to inhibit DDR1 autophosphorylation and can be used to establish what pharmacology is DDR1-dependent. A combinatorial screen of DDR1-IN-1 with a library of annotated kinase inhibitors revealed that inhibitors of PI3K and mTOR such as GSK2126458 potentiate the antiproliferative activity of DDR1-IN-1 in colorectal cancer cell lines. DDR1-IN-1 provides a useful pharmacological probe for DDR1-dependent signal transduction

A bioinventory of select terrestrial insects at Braidwood Dunes and Savanna Nature Preserve (Will County, Illinois)

We conducted an inventory of select terrestrial insect groups at Braidwood Dunes and Savanna Nature Preserve in 2011 and 2012. A total of 823 unique species, representing 19 orders of Hexapods, were recorded using a variety of sampling methods (including: light trapping, pitfall trapping, sweep net, vacuum sample, litter sample, soil core, wine rope, visual transect). Intensive studies focused on springtails (Collembola), grasshoppers, crickets and katydids (Orthoptera), true bugs (Hemiptera: Heteroptera), leafhoppers and kin (Hemiptera: Auchenorrhyncha), ground beetles (Coleoptera: Carabidae) and butterflies and macromoths (Lepidoptera). We estimate that our records comprise around 11% of the total fauna of Hexapoda that occur at this 315--‐acre site. We evaluated sampling completeness for each group and compared, richness, diversity and evenness across habitat types. Special attention was focused on midwestern remnant dependent species, conservative prairie and savanna insects of the Chicago Wilderness region, and species that appear on Illinois' list of species in greatest need of conservation. We provide the Forest Preserve District of Will County with management recommendations relating to the terrestrial for this site, as well as a large collection of images covering many of the species we encountered. Braidwood Dunes and Savanna Nature Preserve contains a variety of rare and understudied species, some of which have only infrequently been encountered. These animals play a Cover photo: Papaipema speciosissima (Noctuidae), the Osmunda Borer Moth 3 wide variety of roles within the ecosystem and various habitats, and warrant special consideration and appreciation not only by land managers but also by the members of the public with an interest in the natural world.unpublishednot peer reviewe

On positivity of Ehrhart polynomials

Ehrhart discovered that the function that counts the number of lattice points in dilations of an integral polytope is a polynomial. We call the coefficients of this polynomial Ehrhart coefficients, and say a polytope is Ehrhart positive if all Ehrhart coefficients are positive (which is not true for all integral polytopes). The main purpose of this article is to survey interesting families of polytopes that are known to be Ehrhart positive and discuss the reasons from which their Ehrhart positivity follows. We also include examples of polytopes that have negative Ehrhart coefficients and polytopes that are conjectured to be Ehrhart positive, as well as pose a few relevant questions.Comment: 40 pages, 7 figures. To appear in in Recent Trends in Algebraic Combinatorics, a volume of the Association for Women in Mathematics Series, Springer International Publishin

Adaptive optics with an infrared pyramid wavefront sensor at Keck

The study of cold or obscured, red astrophysical sources can significantly benefit from adaptive optics (AO) systems employing infrared (IR) wavefront sensors. One particular area is the study of exoplanets around M-dwarf stars and planet formation within protoplanetary disks in star-forming regions. Such objects are faint at visible wavelengths but bright enough in the IR to be used as a natural guide star for the AO system. Doing the wavefront sensing at IR wavelengths enables high-resolution AO correction for such science cases, with the potential to reach the contrasts required for direct imaging of exoplanets. To this end, a new near-infrared pyramid wavefront sensor (PyWFS) has been added to the Keck II AO system, extending the performance of the facility AO system for the study of faint red objects. We present the Keck II PyWFS, which represents a number of firsts, including the first PyWFS installed on a segmented telescope and the first use of an IR PyWFS on a 10-m class telescope. We discuss the scientific and technological advantages offered by IR wavefront sensing and present the design and commissioning of the Keck PyWFS. In particular, we report on the performance of the Selex Avalanche Photodiode for HgCdTe InfraRed Array detector used for the PyWFS and highlight the novelty of this wavefront sensor in terms of the performance for faint red objects and the improvement in contrast. The system has been commissioned for science with the vortex coronagraph in the NIRC2 IR science instrument and is being commissioned alongside a new fiber injection unit for NIRSPEC. We present the first science verification of the system—to facilitate the study of exoplanets around M-type stars

Adaptive optics with an infrared pyramid wavefront sensor at Keck

The study of cold or obscured, red astrophysical sources can significantly benefit from adaptive optics (AO) systems employing infrared (IR) wavefront sensors. One particular area is the study of exoplanets around M-dwarf stars and planet formation within protoplanetary disks in star-forming regions. Such objects are faint at visible wavelengths but bright enough in the IR to be used as a natural guide star for the AO system. Doing the wavefront sensing at IR wavelengths enables high-resolution AO correction for such science cases, with the potential to reach the contrasts required for direct imaging of exoplanets. To this end, a new near-infrared pyramid wavefront sensor (PyWFS) has been added to the Keck II AO system, extending the performance of the facility AO system for the study of faint red objects. We present the Keck II PyWFS, which represents a number of firsts, including the first PyWFS installed on a segmented telescope and the first use of an IR PyWFS on a 10-m class telescope. We discuss the scientific and technological advantages offered by IR wavefront sensing and present the design and commissioning of the Keck PyWFS. In particular, we report on the performance of the Selex Avalanche Photodiode for HgCdTe InfraRed Array detector used for the PyWFS and highlight the novelty of this wavefront sensor in terms of the performance for faint red objects and the improvement in contrast. The system has been commissioned for science with the vortex coronagraph in the NIRC2 IR science instrument and is being commissioned alongside a new fiber injection unit for NIRSPEC. We present the first science verification of the system—to facilitate the study of exoplanets around M-type stars