Background paper on the international seafood trade and poverty

(121 p.

FISHRENT; Bio-economic simulation and optimisation model

Key findings: The FISHRENT model is a major step forward in bio-economic model-ling, combining features that have not been fully integrated in earlier models: 1- Incorporation of any number of species (or stock) and/or fleets 2- Integration of simulation and optimisation over a period of 25 years 3- Integration of effort and TAC-driven management policies 4- Three independent relations for stock growth, production and investments. The feedbacks within the model allow for a dynamic simulation. The main application of the model is scenario analysis of policy options. Complementary findings: The model formulates a complete set of mathematical relations, but it also con-tains a number of important assumptions, which remain to be tested empirically. Therefore the model presents a challenging agenda for empirical research, which should lead to further qualitative and quantitative improvements of the in-dividual mathematical equations and parameter values. Method: This model was developed during the EU-funded project 'Remuneration of spawning stock biomass'. Its aim was to generate consistent sets of scenarios for an assessment of potential resource rents in different EU fisheries. The model comprises six modules, each focussing on a different aspect of the functioning of the fisheries system: biology (stocks), economy (costs, earnings and profits), policy (TACs, effort and access fees), behaviour (investments), prices (fish and fuel) and an interface linking the modules together. Input, calculation and output are clearly separated. The model produces a standard set of graphics, which provide a quick insight into the results of any model run. All output of the model runs can be exported to database software for further analysis. The model has been built in Excel, which makes it accessible for most us-ers. It has been used in new applications and even translated to other software. The model is continually further developed

TPCI: The PLUTO-CLOUDY Interface

We present an interface between the (magneto-) hydrodynamics code PLUTO and the plasma simulation and spectral synthesis code CLOUDY. By combining these codes, we constructed a new photoionization hydrodynamics solver: The PLUTO-CLOUDY Interface (TPCI), which is well suited to simulate photoevaporative flows under strong irradiation. The code includes the electromagnetic spectrum from X-rays to the radio range and solves the photoionization and chemical network of the 30 lightest elements. TPCI follows an iterative numerical scheme: First, the equilibrium state of the medium is solved for a given radiation field by CLOUDY, resulting in a net radiative heating or cooling. In the second step, the latter influences the (magneto-) hydrodynamic evolution calculated by PLUTO. Here, we validated the one-dimensional version of the code on the basis of four test problems: Photoevaporation of a cool hydrogen cloud, cooling of coronal plasma, formation of a Stroemgren sphere, and the evaporating atmosphere of a hot Jupiter. This combination of an equilibrium photoionization solver with a general MHD code provides an advanced simulation tool applicable to a variety of astrophysical problems.Comment: 13 pages, 10 figures, accepted for publication in A&

Integration and Conventional Systems at STAR

At the beginning of the design and construction of the STAR Detector, the collaboration assigned a team of physicists and engineers the responsibility of coordinating the construction of the detector. This group managed the general space assignments for each sub-system and coordinated the assembly and planning for the detector. Furthermore, as this group was the only STAR group with the responsibility of looking at the system as a whole, the collaboration assigned it several tasks that spanned the different sub-detectors. These items included grounding, rack layout, cable distribution, electrical, power and water, and safety systems. This paper describes these systems and their performance.Comment: 17 pages, 6 figures, Contribution to a NIM Volume Dedicated to the Detectors and the Accelerator at RHI

PPS, a Large Multidomain Protein, Functions with Sex-Lethal to Regulate Alternative Splicing in Drosophila

Alternative splicing controls the expression of many genes, including the Drosophila sex determination gene Sex-lethal (Sxl). Sxl expression is controlled via a negative regulatory mechanism where inclusion of the translation-terminating male exon is blocked in females. Previous studies have shown that the mechanism leading to exon skipping is autoregulatory and requires the SXL protein to antagonize exon inclusion by interacting with core spliceosomal proteins, including the U1 snRNP protein Sans-fille (SNF). In studies begun by screening for proteins that interact with SNF, we identified PPS, a previously uncharacterized protein, as a novel component of the machinery required for Sxl male exon skipping. PPS encodes a large protein with four signature motifs, PHD, BRK, TFS2M, and SPOC, typically found in proteins involved in transcription. We demonstrate that PPS has a direct role in Sxl male exon skipping by showing first that loss of function mutations have phenotypes indicative of Sxl misregulation and second that the PPS protein forms a complex with SXL and the unspliced Sxl RNA. In addition, we mapped the recruitment of PPS, SXL, and SNF along the Sxl gene using chromatin immunoprecipitation (ChIP), which revealed that, like many other splicing factors, these proteins bind their RNA targets while in close proximity to the DNA. Interestingly, while SNF and SXL are specifically recruited to their predicted binding sites, PPS has a distinct pattern of accumulation along the Sxl gene, associating with a region that includes, but is not limited to, the SxlPm promoter. Together, these data indicate that PPS is different from other splicing factors involved in male-exon skipping and suggest, for the first time, a functional link between transcription and SXL–mediated alternative splicing. Loss of zygotic PPS function, however, is lethal to both sexes, indicating that its role may be of broad significance

Failure to thrive - An overlooked manifestation of KMT2B-related dystonia: A case presentation

Background: KMT2B-related dystonia is a recently described form of childhood onset dystonia that may improve with deep brain stimulation. Prior reports have focused on neurologic features including prominent bulbar involvement without detailing general health consequences that may result from orolingual dysfunction. We describe a family with novel KMT2B mutation with several members with failure to thrive to highlight this non-neurologic, but consequential impact of mutation in this gene. Case presentation: We present a case of a 15-year old female who was admitted and evaluated for failure to thrive. On exam, she had severe speech dysfluency, limited ability to protrude the tongue, and generalized dystonia involving the oromandibular region, right upper and left lower extremity with left foot inversion contracture. The proband and her parents underwent whole genome sequencing. A previously undescribed variant, c.4960 T > C (p.Cys1654Arg), was identified in the KMT2B gene in the proband and mother, and this variant was subsequently confirmed in two maternal cousins, one with failure to thrive. Literature review identified frequent reports of prominent bulbar involvement but failure to thrive is rarely mentioned. Conclusion: Failure to thrive is a common pediatric clinical condition that has consequences for growth and development. In the presence of an abnormal neurologic exam, a search for a specific underlying genetic etiology should be pursued. With this case series, we highlight an unusual potentially treatable cause of failure to thrive, reinforce the importance of precise molecular diagnosis for patients with failure to thrive and an abnormal neurologic exam, and underscore the importance of cascade screening of family members

Ground-based detection of an extended helium atmosphere in the Saturn-mass exoplanet WASP-69b

Hot gas giant exoplanets can lose part of their atmosphere due to strong stellar irradiation, affecting their physical and chemical evolution. Studies of atmospheric escape from exoplanets have mostly relied on space-based observations of the hydrogen Lyman-{\alpha} line in the far ultraviolet which is strongly affected by interstellar absorption. Using ground-based high-resolution spectroscopy we detect excess absorption in the helium triplet at 1083 nm during the transit of the Saturn-mass exoplanet WASP-69b, at a signal-to-noise ratio of 18. We measure line blue shifts of several km/s and post transit absorption, which we interpret as the escape of part of the atmosphere trailing behind the planet in comet-like form. [Additional notes by authors: Furthermore, we provide upper limits for helium signals in the atmospheres of the exoplanets HD 209458b, KELT-9b, and GJ 436b. We investigate the host stars of all planets with detected helium signals and those of the three planets we derive upper limits for. In each case we calculate the X-ray and extreme ultraviolet flux received by these planets. We find that helium is detected in the atmospheres of planets (orbiting the more active stars and) receiving the larger amount of irradiation from their host stars.]Comment: Submitted to Science on 14 March 2018; Accepted by Science on 16 November 2018; Published by Science on 6 December 2018. This is the author's version of the work. It is posted here by permission of the AAAS for personal use. The definitive version was published in Science, on 6 December 2018 - Report: pages 21 (preprint), 4 figures - Supplementary materials: 22 pages, 10 figures, 3 table

Modeling a Two-Stage High-Power Anode Layer Thruster and its Plume

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/76625/1/AIAA-22185-240.pd