Stability of constant retrial rate systems with NBU input*

We study the stability of a single-server retrial queueing system with constant retrial rate, general input and service processes. First, we present a review of some relevant recent results related to the stability criteria of similar systems. Sufficient stability conditions were obtained by Avrachenkov and Morozov (2014), which hold for a rather general retrial system. However, only in the case of Poisson input is an explicit expression provided; otherwise one has to rely on simulation. On the other hand, the stability criteria derived by Lillo (1996) can be easily computed but only hold for the case of exponential service times. We present new sufficient stability conditions, which are less tight than the ones obtained by Avrachenkov and Morozov (2010), but have an analytical expression under rather general assumptions. A key assumption is that interarrival times belongs to the class of new better than used (NBU) distributions. We illustrate the accuracy of the condition based on this assumption (in comparison with known conditions when possible) for a number of non-exponential distributions

Pattern avoidance in binary trees

This paper considers the enumeration of trees avoiding a contiguous pattern. We provide an algorithm for computing the generating function that counts n-leaf binary trees avoiding a given binary tree pattern t. Equipped with this counting mechanism, we study the analogue of Wilf equivalence in which two tree patterns are equivalent if the respective n-leaf trees that avoid them are equinumerous. We investigate the equivalence classes combinatorially. Toward establishing bijective proofs of tree pattern equivalence, we develop a general method of restructuring trees that conjecturally succeeds to produce an explicit bijection for each pair of equivalent tree patterns.Comment: 19 pages, many images; published versio

Special issue: Innovations in farming systems approaches: Introduction

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High-frequency two-input CMOS OTA for continuous-time filter applications

“This material is presented to ensure timely dissemination of scholarly and technical work. Copyright and all rights therein are retained by authors or by other copyright holders. All persons copying this information are expected to adhere to the terms and constraints invoked by each author's copyright. In most cases, these works may not be reposted without the explicit permission of the copyright holder." “Copyright IEEE. Personal use of this material is permitted. However, permission to reprint/republish this material for advertising or promotional purposes or for creating new collective works for resale or redistribution to servers or lists, or to reuse any copyrighted component of this work in other works must be obtained from the IEEE.”A high-frequency fully differential CMOS operational transconductance amplifier (OTA) is presented for continuous-time filter applications in the megahertz range. The proposed design technique combines a linear cross-coupled quad input stage with an enhanced folded-cascode circuit to increase the output resistance of the amplifier. SPICE simulations show that DC-gain enhancement can be obtained without significant bandwidth limitation. The two-input OTA developed is used in high-frequency tuneable filter design based on IFLF and LC ladder simulation structures. Simulated results of parameters and characteristics of the OTA and filters in a standard 1.2 μm CMOS process (MOSIS) are presented. A tuning circuit is also discussed.Peer reviewe

The role of oxygen in the vertical distribution of nematodes: an experimental approach

The role of oxygen in the vertical distribution of nematodes was investigated by means of an experiment in which different oxygen conditions were imposed on sediment from an intertidal area of the Oosterschelde (The Netherlands). To test our hypothesis that the vertical distribution of the nematode assemblages was not influenced by changing oxygen conditions (e.g. nematodes do not migrate to favourable oxygen conditions), 5 cm sediment was inversed and incubated for 5 days at the lab. In a first treatment, food (diatoms) was added to the bottom; in a second treatment oxygen and food were added to the bottom. For each case and a control treatment, fresh, well-aerated Oosterschelde water was added on top of the sediment. The analysis of the field situation showed that nematodes were the most abundant taxon. Highest densities were observed in the subsurface sediment layer (1-2 cm). The lower abundance in the oxygen and algae-rich superficial layer (0-0.5 cm) could be due to the time of sampling relative to the tides or to biotic factors (e.g. macrofaunal activity). The vertical distribution of the nematode assemblages in the experimental and control treatments proved to be significantly different. An obvious segregation existed between the nematode species assemblage from the superficial (0-0.2cm) and the deeper layers (0.2-1 cm and 4-5 cm). Characterising genera for the superficial sediment layers were Daptonema, Ptycholaimellus, Prochromadorella and Microlaimus; for the deeper layers Terschellingia and Microlaimus. The occurrence of the first species assemblage is determined by the presence of free oxygen. The second species assemblage is adapted to the reduced sediment; nevertheless, artificial addition of limited amounts of oxygen to the deeper sediment layers favoured the assemblage as higher abundances were recorded. In general, oxygen seems to be important in determining the vertical distribution of nematodes in this experiment

Nematoda - free living

The list was compiled by Guy De Smet, a non-specialist, who was assisted by nematologists Magda Vincx, Ann Vanreusel, Sandra Vanhove, Jan Vanaverbeke and Maaike Steyaert. Dr. F. Riemann gave useful advice for the genus Daptonema. The classification in the list is based upon Lorenzen (1979, 1994). Information on the geographic distribution in the list is based upon Gerlach and Riemann (1973, 1974), Platt and Warwick (1983, 1988) and Warwick et al. (1998).ReferencesLorenzen, S. Entwürf eines Phylogenetischen Systems der Freilebenden Nematoden, Kiel, 1979.Lorenzen, S. The Phylogenetic Systematics of Freeliving Nematodes, The Ray Society, 1994.Gerlach, S. A. and Riemann, F. The Bremerhaven Checklist of Aquatic Nematodes. Veröffentlichungen des Instituts für Meeresforschung in Bremerhaven, Supplement 4, (Heft 1 1973, Heft 2 1974).Platt, H. M. and Warwick, R. M. Free-living Marine Nematodes (Part I British Enoplids) Synopses of the British Fauna (New series) No. 28, 1983.Platt, H. M. and Warwick, R. M. Free-living Marine Nematodes (Part II British Chromadorids) Synopses of the British Fauna (New series) No. 38, 1988.Warwick, R. M., Platt, H. M. and Somerfield, P. J. Free-living Marine Nematodes (Part III Monhysterids) Synopses of the British Fauna (New series) No. 53, 1998.</ul

Structural and functional basis for RNA cleavage by Ire1

BACKGROUND: The unfolded protein response (UPR) controls the protein folding capacity of the endoplasmic reticulum (ER). Central to this signaling pathway is the ER-resident bifunctional transmembrane kinase/endoribonuclease Ire1. The endoribonuclease (RNase) domain of Ire1 initiates a non-conventional mRNA splicing reaction, leading to the production of a transcription factor that controls UPR target genes. The mRNA splicing reaction is an obligatory step of Ire1 signaling, yet its mechanism has remained poorly understood due to the absence of substrate-bound crystal structures of Ire1, the lack of structural similarity between Ire1 and other RNases, and a scarcity of quantitative enzymological data. Here, we experimentally define the active site of Ire1 RNase and quantitatively evaluate the contribution of the key active site residues to catalysis. RESULTS: This analysis and two new crystal structures suggest that Ire1 RNase uses histidine H1061 and tyrosine Y1043 as the general acid-general base pair contributing \u3e/=7.6 kcal/mol and 1.4 kcal/mol to transition state stabilization, respectively, and asparagine N1057 and arginine R1056 for coordination of the scissile phosphate. Investigation of the stem-loop recognition revealed that additionally to the stem-loops derived from the classic Ire1 substrates HAC1 and Xbp1 mRNA, Ire1 can site-specifically and rapidly cleave anticodon stem-loop (ASL) of unmodified tRNAPhe, extending known substrate specificity of Ire1 RNase. CONCLUSIONS: Our data define the catalytic center of Ire1 RNase and suggest a mechanism of RNA cleavage: each RNase monomer apparently contains a separate catalytic apparatus for RNA cleavage, whereas two RNase subunits contribute to RNA stem-loop docking. Conservation of the key residues among Ire1 homologues suggests that the mechanism elucidated here for yeast Ire1 applies to Ire1 in metazoan cells, and to the only known Ire1 homologue RNase L

Belgian shipwrecks: hotspots for marine biodiversity

Hard bottom substrates at sea allow the development of communities that are often rich in terms of species diversity. Non-biogenic structures such as shipwrecks are an integral part of these substrates, even if they have an anthropogenic origin and the species assemblages they harbor could be for that reason qualified as 'exotic'. There are 200 recent shipwrecks on the Belgian Continental Shelf (BCS), which represent a large fraction of the hard substrate available locally; their presence has an additional interest if we know that the major part of the English Channel and Southern Bight of the North Sea consists almost exclusively of soft sediments. Five shipwrecks on the BCS will be studied in order to assess the meio- and macrofaunal diversity using direct observations and scuba sampling techniques. The soft sediments close to shipwrecks will also be studied to serve as model for areas relatively undisturbed by fisheries (untrawled). Added to this, the influence of shipwrecks on local hydrodynamics and sediment transport will favor the colonization by fragile epibenthic species and as a consequence increase habitat complexity. For each site, standard abiotic parameters and current vectors will be measured and modeled. The information will be centralized in a database and disseminated through a web site devoted to the biodiversity of the BCS. The results will be relevant to the management of the BCS; the anthropogenic hard substrates of shipwrecks can serve as a model for what will happen with the installation of offshore windmills. A brochure will increase public awareness of the importance of marine diversity, and increase public support for marine protected areas

The Molecular Mechanism of Transport by the Mitochondrial ADP/ATP Carrier.

Mitochondrial ADP/ATP carriers transport ADP into the mitochondrial matrix for ATP synthesis, and ATP out to fuel the cell, by cycling between cytoplasmic-open and matrix-open states. The structure of the cytoplasmic-open state is known, but it has proved difficult to understand the transport mechanism in the absence of a structure in the matrix-open state. Here, we describe the structure of the matrix-open state locked by bongkrekic acid bound in the ADP/ATP-binding site at the bottom of the central cavity. The cytoplasmic side of the carrier is closed by conserved hydrophobic residues, and a salt bridge network, braced by tyrosines. Glycine and small amino acid residues allow close-packing of helices on the matrix side. Uniquely, the carrier switches between states by rotation of its three domains about a fulcrum provided by the substrate-binding site. Because these features are highly conserved, this mechanism is likely to apply to the whole mitochondrial carrier family. VIDEO ABSTRACT

Belgian shipwreck: hotspots for marine biodiversity BEWREMABI: final report

The main aim of the project is to document the fauna found on five shipwrecks in the Belgian part of the North Sea (map). While we have a fairly good understanding of the fauna of soft bottoms of our part of the North Sea, the fauna of these artificial hard substrates is largely unknown. Study of these habitats will allow us to understand species distribution patterns, and allow us to predict which species to expect on other artificial hard substrates, such as sokkels of wind mills. It is a two year research project carried out in the framework of the SPSD-II research action of the Belgian Federal Science Policy Office