Are plankton nets a thing of the past? An assessment of in situ imaging of zooplankton for large-scale ecosystem assessment and policy decision-making

Zooplankton are fundamental to aquatic ecosystem services such as carbon and nutrient cycling. Therefore, a robust evidence base of how zooplankton respond to changes in anthropogenic pressures, such as climate change and nutrient loading, is key to implementing effective policy-making and management measures. Currently, the data on which to base this evidence, such as long time-series and large-scale datasets of zooplankton distribution and community composition, are too sparse owing to practical limitations in traditional collection and analysis methods. The advance of in situ imaging technologies that can be deployed at large scales on autonomous platforms, coupled with artificial intelligence and machine learning (AI/ML) for image analysis, promises a solution. However, whether imaging could reasonably replace physical samples, and whether AI/ML can achieve a taxonomic resolution that scientists trust, is currently unclear. We here develop a roadmap for imaging and AI/ML for future zooplankton monitoring and research based on community consensus. To do so, we determined current perceptions of the zooplankton community with a focus on their experience and trust in the new technologies. Our survey revealed a clear consensus that traditional net sampling and taxonomy must be retained, yet imaging will play an important part in the future of zooplankton monitoring and research. A period of overlapping use of imaging and physical sampling systems is needed before imaging can reasonably replace physical sampling for widespread time-series zooplankton monitoring. In addition, comprehensive improvements in AI/ML and close collaboration between zooplankton researchers and AI developers are needed for AI-based taxonomy to be trusted and fully adopted. Encouragingly, the adoption of cutting-edge technologies for zooplankton research may provide a solution to maintaining the critical taxonomic and ecological knowledge needed for future zooplankton monitoring and robust evidence-based policy decision-making

Monitoring and modelling marine zooplankton in a changing climate

Zooplankton are major consumers of phytoplankton primary production in marine ecosystems. As such, they represent a critical link for energy and matter transfer between phytoplankton and bacterioplankton to higher trophic levels and play an important role in global biogeochemical cycles. In this Review, we discuss key responses of zooplankton to ocean warming, including shifts in phenology, range, and body size, and assess the implications to the biological carbon pump and interactions with higher trophic levels. Our synthesis highlights key knowledge gaps and geographic gaps in monitoring coverage that need to be urgently addressed. We also discuss an integrated sampling approach that combines traditional and novel techniques to improve zooplankton observation for the benefit of monitoring zooplankton populations and modelling future scenarios under global changes

Eggs of the copepod Acartia tonsa Dana require hypoxic conditions to tolerate prolonged embryonic development arrest

Additional file 1. Raw data and calculations for all experiments as well as an overview of experiments in this study

Summer bloom of Gloeotrichia echinulata and Aphanizomenon flos-aquae and phosphorus levels in Antermony Loch, central Scotland

Nutrient levels (phosphorus and nitrogen) were measured in a small reservoir in Scotland between March 1994 and October 1995. Algae species were identified. Dense blooms of Gloeotrichia echinulata have regularly occurred in late summer in the reservoir for many years, but it did not reach bloom proportions during the 1995 summer and seemed to have been replaced by Aphanizomenon. The bloom of the cyanobacterium Gloeotrichia echinulata that occurred in August 1994 was studied in relation to phosphorus levels present at the time in the water. Results show that the bloom developed after a slight increase in dissolved inorganic phosphorus; while the bloom was developing, particulate inorganic forms of phosphorus increased and were then replaced by particulate organic forms when the bloom reached its maximum density. All phosphorus fractions started to decrease shortly before the bloom collapsed. Our study showed that there did not seem to be any change in the distribution of phosphorus between its different fractions, at least during the first 24 h after collection when the sample was kept in a refrigerator in the dark. We therefore conclude that Gloeotrichia echinulata was probably responsible for transferring phosphorus from the sediments up to the water column in Antermony

Bottom-up effects of climate on fish populations: data from the Continuous Plankton Recorder

The Continuous Plankton Recorder (CPR) dataset on fish larvae has an extensive spatio-temporal coverage that allows the responses of fish populations to past changes in climate variability, including abrupt changes such as regime shifts, to be investigated. The newly available dataset offers a unique opportunity to investigate long-term changes over decadal scales in the abundance and distribution of fish larvae in relation to physical and biological factors. A principal component analysis (PCA) using 7 biotic and abiotic parameters is applied to investigate the impact of environmental changes in the North Sea on 5 selected taxa of fish larvae during the period 1960 to 2004. The analysis revealed 4 periods of time (1960–1976; 1977–1982; 1983–1996; 1997–2004) reflecting 3 different ecosystem states. The larvae of clupeids, sandeels, dab and gadoids seemed to be affected mainly by changes in the plankton ecosystem, while the larvae of migratory species such as Atlantic mackerel responded more to hydrographic changes. Climate variability seems more likely to influence fish populations through bottom-up control via a cascading effect from changes in the North Atlantic Oscillation (NAO) impacting on the hydro dynamic features of the North Sea, in turn impacting on the plankton available as prey for fish larvae. The responses and adaptability of fish larvae to changing environmental conditions, parti cularly to changes in prey availability, are complex and species-specific. This complexity is enhanced with fishing effects interacting with climate effects and this study supports furthering our under - standing of such interactions before attempting to predict how fish populations respond to climate variabilit

Seasonal and interannual variation of the phytoplankton and copepod dynamics in Liverpool Bay

The seasonal and interannual variability in the phytoplankton community in Liverpool Bay between 2003 and 2009 has been examined using results from high frequency, in situ measurements combined with discrete samples collected at one location in the bay. The spring phytoplankton bloom (up to 29.4 mg chlorophyll m?3) is an annual feature at the study site and its timing may vary by up to 50 days between years. The variability in the underwater light climate and turbulent mixing are identified as key factors controlling the timing of phytoplankton blooms. Modelled average annual gross and net production are estimated to be 223 and 56 g C m?2 year?1, respectively. Light microscope counts showed that the phytoplankton community is dominated by diatoms, with dinoflagellates appearing annually for short periods of time between July and October. The zooplankton community at the study site is dominated by copepods and use of a fine mesh (80 ?m) resulted in higher abundances of copepods determined (up to 2.5×106 ind. m?2) than has previously reported for this location. There is a strong seasonal cycle in copepod biomass and copepods greater than 270 ?m contribute less than 10% of the total biomass. Seasonal trends in copepod biomass lag those in the phytoplankton community with a delay of 3 to 4 months between the maximum phytoplankton biomass and the maximum copepod biomass. Grazing by copepods exceeds net primary production at the site and indicates that an additional advective supply of carbon is required to support the copepod community