PCA3 molecular urine assay for prostate cancer: association with pathologic features and impact of collection protocols

IntroductionPCA3 is a non-coding mRNA molecule that is overexpressed in prostate cancer. The purpose of this study is to evaluate the utility of the PCA3 molecular urine test scores to predict adverse pathologic features and catheterized specimen collection.MethodsHundred men with clinically localized prostate cancer scheduled to undergo robotic prostatectomy were enrolled in the study following a standard consent process. The study protocol consisted of providing four urine samples. Voided urine obtained following digital rectal examination (DRE) pre-operatively (Vl), catheterized urine without DRE (V2), and l0-day and 6-week postoperative voided (V3 and V4) urine samples were collected and analyzed. These four urine specimens underwent target capture, transcription-mediated amplification, and hybridization in order to quantify both PCA3 and PSA mRNA. The PCA3 score was calculated as the ratio of PCA3 to PSA.ResultsInformative rates (sufficient mRNA for analysis) for VI, V2, V3 and V4 were 91, 85, 0 and 2%, respectively. There was no significant associations with pathological stage, Gleason score >6. Higher PCA3 scores at V1 correlated with increased risk for perineural invasion (P = 0.0479).ConclusionsInformative PCA3 scores can be obtained from post-DRE voided urine as well as catheterized urine without a DRE. The PCA3 test does not seem to predict adverse pathologic features, though, may have an association with perineural invasion. The ability of PCA3 score to predict clinical outcome remains to be determined

Discerning natural and anthropogenic organic matter inputs to salt marsh sediments of Ria Formosa lagoon (South Portugal)

Sedimentary organic matter (OM) origin and molecular composition provide useful information to understand carbon cycling in coastal wetlands. Core sediments from threors' Contributionse transects along Ria Formosa lagoon intertidal zone were analysed using analytical pyrolysis (Py-GC/MS) to determine composition, distribution and origin of sedimentary OM. The distribution of alkyl compounds (alkanes, alkanoic acids and alkan-2-ones), polycyclic aromatic hydrocarbons (PAHs), lignin-derived methoxyphenols, linear alkylbenzenes (LABs), steranes and hopanes indicated OM inputs to the intertidal environment from natural-autochthonous and allochthonous-as well as anthropogenic. Several n-alkane geochemical indices used to assess the distribution of main OM sources (terrestrial and marine) in the sediments indicate that algal and aquatic macrophyte derived OM inputs dominated over terrigenous plant sources. The lignin-derived methoxyphenol assemblage, dominated by vinylguaiacol and vinylsyringol derivatives in all sediments, points to large OM contribution from higher plants. The spatial distributions of PAHs (polyaromatic hydrocarbons) showed that most pollution sources were mixed sources including both pyrogenic and petrogenic. Low carbon preference indexes (CPI > 1) for n-alkanes, the presence of UCM (unresolved complex mixture) and the distribution of hopanes (C-29-C-36) and steranes (C-27-C-29) suggested localized petroleum-derived hydrocarbon inputs to the core sediments. Series of LABs were found in most sediment samples also pointing to domestic sewage anthropogenic contributions to the sediment OM.EU Erasmus Mundus Joint Doctorate fellowship (FUECA, University of Cadiz, Spain)EUEuropean Commission [FP7-ENV-2011, 282845, FP7-534 ENV-2012, 308392]MINECO project INTERCARBON [CGL2016-78937-R]info:eu-repo/semantics/publishedVersio

Cretaceous sea-surface temperature evolution: Constraints from TEX86 and planktonic foraminiferal oxygen isotopes

It is well established that greenhouse conditions prevailed during the Cretaceous Period (~ 145–66 Ma). Determining the exact nature of the greenhouse-gas forcing, climatic warming and climate sensitivity remains, however, an active topic of research. Quantitative and qualitative geochemical and palaeontological proxies provide valuable observational constraints on Cretaceous climate. In particular, reconstructions of Cretaceous sea-surface temperatures (SSTs) have been revolutionised firstly by the recognition that clay-rich sequences can host exceptionally preserved planktonic foraminifera allowing for reliable oxygen-isotope analyses and, secondly by the development of the organic palaeothermometer TEX86, based on the distribution of marine archaeal membrane lipids. Here we provide a new compilation and synthesis of available planktonic foraminiferal δ18O (δ18Opl) and TEX86-SST proxy data for almost the entire Cretaceous Period. The compilation uses SSTs recalculated from published raw data, allowing examination of the sensitivity of each proxy to the calculation method (e.g., choice of calibration) and places all data on a common timescale. Overall, the compilation shows many similarities with trends present in individual records of Cretaceous climate change. For example, both SST proxies and benthic foraminiferal δ18O records indicate maximum warmth in the Cenomanian–Turonian interval. Our reconstruction of the evolution of latitudinal temperature gradients (low, <±30°, minus higher, >±48°, palaeolatitudes) reveals temporal changes. In the Valanginian–Aptian, the low-to-higher mid-latitudinal temperature gradient was weak (decreasing from ~ 10–17 °C in the Valanginian, to ~ 3–5 °C in the Aptian, based on TEX86-SSTs). In the Cenomanian–Santonian, reconstructed latitudinal temperature contrasts are also small relative to modern (< 14 °C, based on low-latitude TEX86 and δ18Opl SSTs minus higher latitude δ18Opl SSTs, compared with ~ 20 °C for the modern). In the mid-Campanian to end-Maastrichtian, latitudinal temperature gradients strengthened (~ 19–21 °C, based on low-latitude TEX86 and δ18Opl SSTs minus higher latitude δ18Opl SSTs), with cooling occurring at low-, middle- and higher palaeolatitude sites, implying global surface-ocean cooling and/or changes in ocean heat transport in the Late Cretaceous. These reconstructed long-term trends are resilient, regardless of the choice of proxy (TEX86 or δ18Opl) or calibration. This new Cretaceous SST synthesis provides an up-to-date target for modelling studies investigating the mechanics of extreme climates

Cretaceous sea-surface temperature evolution: Constraints from TEX₈₆and planktonic foraminiferal oxygen isotopes

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