A direct primitive variable recovery scheme for hyperbolic conservative equations: the case of relativistic hydrodynamics

In this article we develop a Primitive Variable Recovery Scheme (PVRS) to solve any system of coupled differential conservative equations. This method obtains directly the primitive variables applying the chain rule to the time term of the conservative equations. With this, a traditional finite volume method for the flux is applied in order avoid violation of both, the entropy and "Rankine-Hugoniot" jump conditions. The time evolution is then computed using a forward finite difference scheme. This numerical technique evades the recovery of the primitive vector by solving an algebraic system of equations as it is often used and so, it generalises standard techniques to solve these kind of coupled systems. The article is presented bearing in mind special relativistic hydrodynamic numerical schemes with an added pedagogical view in the appendix section in order to easily comprehend the PVRS. We present the convergence of the method for standard shock-tube problems of special relativistic hydrodynamics and a graphical visualisation of the errors using the fluctuations of the numerical values with respect to exact analytic solutions. The PVRS circumvents the sometimes arduous computation that arises from standard numerical methods techniques, which obtain the desired primitive vector solution through an algebraic polynomial of the charges.Comment: 19 pages, 6 figures, 2 tables. Accepted for publication in PLOS ON

Competing Interactions among Supramolecular Structures on Surfaces

A simple model was constructed to describe the polar ordering of non-centrosymmetric supramolecular aggregates formed by self assembling triblock rodcoil polymers. The aggregates are modeled as dipoles in a lattice with an Ising-like penalty associated with reversing the orientation of nearest neighbor dipoles. The choice of the potentials is based on experimental results and structural features of the supramolecular objects. For films of finite thickness, we find a periodic structure along an arbitrary direction perpendicular to the substrate normal, where the repeat unit is composed of two equal width domains with dipole up and dipole down configuration. When a short range interaction between the surface and the dipoles is included the balance between the up and down dipole domains is broken. Our results suggest that due to surface effects, films of finite thickness have a none zero macroscopic polarization, and that the polarization per unit volume appears to be a function of film thickness.Comment: 3 pages, 3 eps figure

Competing interactions in two dimensional Coulomb systems: Surface charge heterogeneities in co-assembled cationic-anionic incompatible mixtures

A binary mixture of oppositely charged components confined to a plane such as cationic and anionic lipid bilayers may exhibit local segregation. The relative strength of the net short range interactions, which favors macroscopic segregation, and the long range electrostatic interactions, which favors mixing, determines the length scale of the finite size or microphase segregation. The free energy of the system can be examined analytically in two separate regimes, when considering small density fluctuations at high temperatures, and when considering the periodic ordering of the system at low temperatures (F. J. Solis and M. Olvera de la Cruz, J. Chem. Phys. 122, 054905 (2000)). A simple Molecular Dynamics simulation of oppositely charged monomers, interacting with a short range Lennard Jones potential and confined to a two dimensional plane, is examined at different strengths of short and long range interactions. The system exhibits well-defined domains that can be characterized by their periodic length-scale as well as the orientational ordering of their interfaces. By adding salt, the ordering of the domains disappears and the mixture macroscopically phase segregates in agreement with analytical predictions.Comment: 8 pages, 5 figures, accepted for publication in J. Chem. Phys, Figure 1 include

Ion condensation on charged patterned surfaces

We study ion condensation onto a patterned surface of alternating charges. The competition between self-energy and ion-surface interactions leads to the formation of ionic crystalline structures at low temperatures. We consider different arrangements of underlying ionic crystals, including single ion adsorption, as well as the formation of dipoles at the interface between charged domains. Molecular dynamic simulation illustrates existence of single and mixed phases. Our results contribute to understanding pattern recognition, and molecular separation and synthesis near patterned surfaces.Comment: 3 figure

Effects of Salinity on Growth and Molting of Sympatric Callinectes spp. from Camaronera Lagoon, Veracruz, Mexico

Megalopae of Callinectes rathbunae Contrareras, 1930 and C. sapidus Rathbun, 1896 were exposed to salinities of 5, 15, and 25 at 25.0degreesC (through crab stage 16) to determine if there were species-specific differences in survival, growth, and intermolt duration. Survival of C. rathbunae decreased significantly at higher salinities, but there was no salinity effect for C. sapidus. Callinectes rathbunae had significantly higher survival than C. sapidus in salinities of 5 and 15, but survival was not different in a salinity of 25. There was no difference in survival of C. rathbunae by gender; survival of both genders was generally lowest at a salinity of 25. There was no difference in survival for females of C. sapidus among salinities, but mates had lowest survival at the lowest salinity. Additionally, males had significantly greater survival than females in salinities of 15 and 25. Females of C. rathbunae grew faster than males at all salinities and both genders grew fastest in a salinity of 15. In contrast, males and females of C. sapidus grew at the same rate, with the lowest growth rate for both genders at the lowest salinities. Relative to C rathbunae, C. sapidus had a significantly higher growth rate and shorter intermolt duration at the highest salinity. There was no significant difference in intermolt duration between genders for C. rathbunae or C. sapidus. However, intermolt duration among salinity treatments for C. rathbunae differed significantly in crabs greater than or equal to stage 7, with the longest duration in the highest salinity. In contrast, intermolt duration of C. sapidus was shortest in a salinity of 25. Results of this study suggest that C. rathbunae is more tolerant of low salinity habitats than C. sapidus

Estrategias basadas en el aprendizaje cooperativo y en la metrología para el laboratorio en el trabajo experimental

Se proponen estrategias de secuencia didáctica para mejorar el trabajo experimental con la finalidad de conseguir los objetivos de aprendizaje y los contenidos propuestos. Las estrategias están basadas en el aprendizaje cooperativo y en un control estricto en las mediciones

Electrostatic attraction between cationic-anionic assemblies with surface compositional heterogeneities

Electrostatics plays a key role in biomolecular assembly. Oppositely charged biomolecules, for instance, can co-assembled into functional units, such as DNA and histone proteins into nucleosomes and actin-binding protein complexes into cytoskeleton components, at appropriate ionic conditions. These cationic-anionic co-assemblies often have surface charge heterogeneities that result from the delicate balance between electrostatics and packing constraints. Despite their importance, the precise role of surface charge heterogeneities in the organization of cationic-anionic co-assemblies is not well understood. We show here that co-assemblies with charge heterogeneities strongly interact through polarization of the domains. We find that this leads to symmetry breaking, which is important for functional capabilities, and structural changes, which is crucial in the organization of co-assemblies. We determine the range and strength of the attraction as a function of the competition between the steric and hydrophobic constraints and electrostatic interactions.Comment: JCP June/200

Pattern formation on the surface of cationic-anionic cylindrical aggregates

Charged pattern formation on the surfaces of self--assembled cylindrical micelles formed from oppositely charged heterogeneous molecules such as cationic and anionic peptide amphiphiles is investigated. The net incompatibility $\chi$ among different components results in the formation of segregated domains, whose growth is inhibited by electrostatics. The transition to striped phases proceeds through an intermediate structure governed by fluctuations, followed by states with various lamellar orientations, which depend on cylinder radius $R_c$ and $\chi$. We analyze the specific heat, susceptibility $S(q^*)$, domain size $\Lambda=2\pi/q^*$ and morphology as a function of $R_c$ and $\chi$.Comment: Sent to PRL 11Jan05 Transferred from PRL to PRE 10Jun0