317 research outputs found

    Evidence from phylogenetic and genome fingerprinting analyses suggests rapidly changing variation in Halorubrum and Haloarcula populations

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    Halobacteria require high NaCl concentrations for growth and are the dominant inhabitants of hypersaline environments above 15% NaCl. They are well documented to be highly recombinogenic, both in frequency and in the range of exchange partners. In this study, we examine the genetic and genomic variation of cultured, naturally co-occurring environmental populations of Halobacteria. Sequence data from multiple loci (~2500bp) identified closely related strains belonging to the genera Halorubrum and Haloarcula. Genome fingerprinting using a random priming PCR amplification method to analyze these isolates revealed diverse banding patterns within and across each of the genera and surprisingly even for isolates that are identical at the nucleotide level for five protein coding sequenced loci. This variance in genome structure even between identical multilocus sequence analysis (MLSA) haplotypes suggests that accumulation of variation is rapid, perhaps occurring every generation

    Crystal size dependence of dipolar ferromagnetic order between Mn6 molecular nanomagnets

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    We study how crystal size influences magnetic ordering in arrays of molecular nanomagnets coupled by dipolar interactions. Compressed fluid techniques have been applied to synthesize crystals of Mn6 molecules (spin S=12) with sizes ranging from 28μm down to 220 nm. The onset of ferromagnetic order and the spin thermalization rates have been studied by means of ac susceptibility measurements. We find that the ordered phase remains ferromagnetic, as in the bulk, but the critical temperature Tc decreases with crystal size. Simple magnetostatic energy calculations, supported by Monte Carlo simulations, account for the observed drop in Tc in terms of the minimum attainable energy for finite-sized magnetic domains limited by the crystal boundaries. Frequency-dependent susceptibility measurements give access to the spin dynamics. Although magnetic relaxation remains dominated by individual spin flips, the onset of magnetic order leads to very long spin thermalization time scales. The results show that size influences the magnetism of dipolar systems with as many as 1011 spins and are relevant for the interpretation of quantum simulations performed on finite lattices

    Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes

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    Advancement of DNA sequencing technology allows the routine use of genome sequences in the various fields of microbiology. The information held in genome sequences proved to provide objective and reliable means in the taxonomy of prokaryotes. Here, we describe the minimal standards for the quality of genome sequences and how they can be applied for taxonomic purposes

    Retaining product value in post-consumer textiles: How to scale a closed-loop system

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    This is the final version. Available on open access from Elsevier via the DOI in this recordIn the face of rapidly growing sustainability challenges, pressure is mounting on businesses to decouple production from virgin resources, reduce waste and phase-out pollution. The Circular Economy (CE) is important for addressing resource efficiency within the textiles sector. In a CE for textiles, clothes would be used more, made to be recycled, and made from safe and renewable inputs. Textiles-to-textiles (T-T) recycling is a key component of a circular textiles industry yet represents only 1% of global textiles production. This paper sets out to answer how a closed-loop system for recycling post-consumer textiles (PCT) can be scaled. Whilst T-T recycling is a rapidly emerging industry, there is a lack of clarity on the enabling conditions needed to scale significantly throughout the value chain. By means of semi-structured interviews with practitioners participating in textiles CE activities, a holistic analysis of the barriers and enablers at all stages of the value chain has been conducted. The paper concludes with practical recommendations addressing each T-T supply chain actor. It makes an important contribution to understanding how actors in the circular value chain, policymakers and convening bodies can act in concert to successfully scale a system for collecting and recycling PCT.Engineering and Physical Sciences Research Council (EPSRC

    Engineering DNA-grafted quatsomes as stable nucleic acid-responsive fluorescent nanovesicles

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    The development of artificial vesicles into responsive architectures capable of sensing the biological environment and simultaneously signaling the presence of a specific target molecule is a key challenge in a range of biomedical applications from drug delivery to diagnostic tools. Herein, the rational design of biomimetic DNA-grafted quatsome (QS) nanovesicles capable of translating the binding of a target molecule to amphiphilic DNA probes into an optical output is presented. QSs are synthetic lipid-based nanovesicles able to confine multiple organic dyes at the nanoscale, resulting in ultra-bright soft materials with attractiveness for sensing applications. Dye-loaded QS nanovesicles of different composition and surface charge are grafted with fluorescent amphiphilic nucleic acid-based probes to produce programmable FRET-active nanovesicles that operate as highly sensitive signal transducers. The photophysical properties of the DNA-grafted nanovesicles are characterized and the highly selective, ratiometric detection of clinically relevant microRNAs with sensitivity in the low nanomolar range are demonstrated. The potential applications of responsive QS nanovesicles for biosensing applications but also as functional nanodevices for targeted biomedical applications is envisaged

    Cellular pharmacokinetics and intracellular activity against Listeria monocytogenes and Staphylococcus aureus of chemically modified and nanoencapsulated gentamicin

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    OBJECTIVES: The aim of this study was to investigate different hydrophobic gentamicin formulations [gentamicin-bis(2-ethylhexyl) sulfosuccinate (GEN-AOT), microstructured GEN-AOT (PCA GEN-AOT) and GEN-AOT-loaded poly(lactide-co-glycolide) acid (PLGA) nanoparticles (NPs)] in view of improving its therapeutic index against intracellular bacteria. The intracellular accumulation, subcellular distribution and intracellular activity of GEN-AOT and NPs in different monocytic-macrophagic cell lines were studied. METHODS: Human THP-1 and murine J774 phagocytic cells were incubated with GEN-AOT formulations at relevant extracellular concentrations [from 1× MIC to 18 mg/L (human C(max))], and their intracellular accumulation, subcellular distribution and toxicity were evaluated and compared with those of conventional unmodified gentamicin. Intracellular activity of the formulations was determined against bacteria showing different subcellular localizations, namely Staphylococcus aureus (phagolysosomes) and Listeria monocytogenes (cytosol). RESULTS: GEN-AOT formulations accumulated 2-fold (GEN-AOT) to 8-fold (GEN-AOT NPs) more than gentamicin in phagocytic cells, with a predominant subcellular localization in the soluble fraction (cytosol) and with no significant cellular toxicity. NP formulations allowed gentamicin to exert its intracellular activity after shorter incubation times and/or at lower concentrations. With an extracellular concentration of 10× MIC, a 1 log(10) decrease in S. aureus intracellular inoculum was obtained after 12 h instead of 24 h for NPs versus free gentamicin, and a static effect was observed against L. monocytogenes at 24 h with NPs, while free gentamicin was ineffective. CONCLUSIONS: GEN-AOT formulations yielded a high cellular accumulation, especially in the cytosol, which resulted in improved efficacy against both intracellular S. aureus and L. monocytogenes

    Dye-Loaded Quatsomes Exhibiting FRET as Nanoprobes for Bioimaging

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    Fluorescent organic nanoparticles (FONs) are emerging as an attractive alternative to the well-established fluorescent inorganic nanoparticles or small organic dyes. Their proper design allows one to obtain biocompatible probes with superior brightness and high photostability, although usually affected by low colloidal stability. Herein, we present a type of FONs with outstanding photophysical and physicochemical properties in-line with the stringent requirements for biomedical applications. These FONs are based on quatsome (QS) nanovesicles containing a pair of fluorescent carbocyanine molecules that give rise to Förster resonance energy transfer (FRET). Structural homogeneity, high brightness, photostability, and high FRET efficiency make these FONs a promising class of optical bioprobes. Loaded QSs have been used for in vitro bioimaging, demonstrating the nanovesicle membrane integrity after cell internalization, and the possibility to monitor the intracellular vesicle fate. Taken together, the proposed QSs loaded with a FRET pair constitute a promising platform for bioimaging and theranostics
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