Imaging Spectropolarimetry with IBIS II: on the fine structure of G-band bright features

We present new results from first observations of the quiet solar photosphere performed through the Interferometric BIdimensional Spectrometer (IBIS) in spectropolarimetric mode. IBIS allowed us to measure the four Stokes parameters in the FeI 630.15 nm and FeI 630.25 nm lines with high spatial and spectral resolutions for 53 minutes; the polarimetric sensitivity achieved by the instrument is 0.003 the continuum intensity level. We focus on the correlation which emerges between G-band bright feature brightness and magnetic filling factor of ~ 1000 G (kG) fields derived by inverting Stokes I and V profiles. More in detail, we present the correlation first in a pixel-by-pixel study of an approximatively 3 arcsec wide bright feature (a small network patch) and then we show that such a result can be extended to all the bright features found in the dataset at any instant of the time sequence. The higher the kG filling factor associated to a feature the higher the brightness of the feature itself. Filling factors up to about 35 % are obtained for the brightest features. Considering the values of the filling factors derived from the inversion analysis of spectropolarimetric data and the brightness variation observed in G-band data we put forward an upper limit for the smallest scale over which magnetic flux concentrations in intergranular lanes produce a G-band brightness enhancement (~ 0.1''). Moreover, the brightness saturation observed for feature sizes comparable to the resolution of the observations is compatible with large G-band bright features being clusters of sub-arcsecond bright points. This conclusion deserves to be confirmed by forthcoming spectropolarimetric observations at higher spatial resolution.Comment: 10 pages, 7 figures, 1 table - Accepted for publication on Ap

Impulse oscillometry may be of value in detecting early manifestations of COPD

SummaryBackgroundSpirometry is used to diagnose chronic obstructive pulmonary disease (COPD). The Impulse oscillometry system (IOS) allows determination of respiratory impedance indices, which might be of potential value in early COPD, although previous experience is limited. We examined pulmonary resistance and reactance measured by IOS in subjects with or without self-reported chronic bronchitis or emphysema or COPD (Q+ or Q−) and subjects with or without COPD diagnosed according to the Global Initiative for Chronic Obstructive Lung Disease (GOLD) criteria (G+ or G−).MethodsFrom a previous population-based study 450 subjects were examined with spirometry and IOS and answered a questionnaire on respiratory symptoms and diseases.ResultsSeventy-seven subjects were Q+, of whom 34 also were G+. Q+/G− subjects (n = 43) reported respiratory symptoms more frequently (35–40% vs 8–14%) but had higher FEV1 (100% vs 87%) than Q−/G+ subjects (n = 90), p < 0.05 for both comparisons. Q+ subjects had higher pulmonary resistance and lower pulmonary reactance than Q− subjects (p < 0.01 for all comparisons). The same pattern was seen both in G+ subjects ((Q+/Q−) R5 0.39/0.32, R5–R20 0.10/0.07, X5 0.13/0.09, AX 0.55/0.27, p < 0.05 for all) and G− subjects ((Q+/Q−) R5 0.35/0.29, R5–R20 0.08/0.06, X5 0.10/0.08, AX 0.31/0.19 p < 0.05 for all) except for R20 (adjusted for gender and age).ConclusionsSelf-reported chronic bronchitis or emphysema or COPD was associated with higher pulmonary resistance and lower pulmonary reactance measured by IOS, both among subjects with and without COPD according to GOLD criteria. IOS may have the potential to detect pathology associated with COPD earlier than spirometry

Characterization of horizontal flows around solar pores from high-resolution time series of images

Though there is increasing evidence linking the moat flow and the Evershed flow along the penumbral filaments, there is not a clear consensus regarding the existence of a moat flow around umbral cores and pores, and the debate is still open. Solar pores appear to be a suitable scenario to test the moat-penumbra relation as evidencing the direct interaction between the umbra and the convective plasma in the surrounding photosphere, without any intermediate structure in between. The present work studies solar pores based on high resolution ground-based and satellite observations. Local correlation tracking techniques have been applied to different-duration time series to analyze the horizontal flows around several solar pores. Our results establish that the flows calculated from different solar pore observations are coherent among each other and show the determinant and overall influence of exploding events in the granulation around the pores. We do not find any sign of moat-like flows surrounding solar pores but a clearly defined region of inflows surrounding them. The connection between moat flows and flows associated to penumbral filaments is hereby reinforced by this work.Comment: 10 pages, 10 figures, Accepted for publication in Astronomy and Astrophysics

Spatial distribution and statistical properties of small-scale convective vortex-like motions in a quiet Sun region

High-resolution observations of a quiet Sun internetwork region taken with the Solar 1-m Swedish Telescope in La Palma are analyzed. We determine the location of small-scale vortex motions in the solar photospheric region by computing the horizontal proper motions of small-scale structures on time series of images. These plasma convectively-driven swirl motions are associated to: (1) downdrafts (that have been commonly explained as corresponding to sites where the plasma is cooled down and hence returned to the interior below the visible photospheric level), and (2) horizontal velocity vectors converging into a central point. The sink cores are proved to be the final destination of passive floats tracing plasma flows towards the center of each vortex. We establish the occurrence of these events to be 1.4 x 10^(-3) and 1.6 x 10^(-3) vortices Mm^(-2) min^(-1) respectively for two time series analyzed here.Comment: 8 pages, 6 figures. Accepted for publication in Monthly Notices of the Royal Astronomical Societ

First reported foodborne outbreak associated with microsporidia, Sweden, October 2009

Microsporidia are spore-forming intracellular parasites that infrequently cause disease in immunocompetent persons. This study describes the first report of a foodborne microsporidiosis outbreak which affected persons visiting a hotel in Sweden. Enterocytozoon bieneusi was identified in stool samples from 7/11 case-patients, all six sequenced samples were genotype C. To confirm that this was not a chance finding, 19 stool samples submitted by healthy persons from a comparable group who did not visit the hotel on that day were tested; all were negative for microsporidia. A retrospective cohort study identified 135 case-patients (attack rate 30%). The median incubation period was 9 days. Consumption of cheese sandwiches [relative risk (RR) 4·1, 95% confidence interval (CI) 1·4–12·2] and salad (RR 2·1, 95% CI 1·1–4) were associated with illness. Both items contained pre-washed, ready-to-eat cucumber slices. Microsporidia may be an under-reported cause of gastrointestinal outbreaks; we recommend that microsporidia be explored as potential causative agents in food- and waterborne outbreaks, especially when no other organisms are identified

A one-year study of foodborne illnesses in the municipality of Uppsala, Sweden.

Surveillance was enhanced and a retrospective interview study performed in 1998-99 to determine incidence, causes, and costs of foodborne illnesses in Uppsala, Sweden. Sixty-eight percent of the detected foodborne illness incidents were single cases, and 32% were outbreaks. Most (85%) of the incidents came to the attention of the municipal authorities through telephone calls from affected persons. Calicivirus, Campylobacter spp., and Staphyloccocus aureus were the most common etiological agents; meat, meat products, and mixed dishes were the most implicated food categories. The incidence of foodborne illness was estimated to be 38 cases per 1,000 inhabitants per year. The estimated average costs per illness were 2,164 Swedish Krona (SEK) ($246) to society and 500 SEK ($57) to the patient. The annual cost of foodborne illnesses in Sweden was estimated to be 1,082 million SEK ($123 million)

Micro-Electro-Mechanical-Systems (MEMS) and Fluid Flows

The micromachining technology that emerged in the late 1980s can provide micron-sized sensors and actuators. These micro transducers are able to be integrated with signal conditioning and processing circuitry to form micro-electro-mechanical-systems (MEMS) that can perform real-time distributed control. This capability opens up a new territory for flow control research. On the other hand, surface effects dominate the fluid flowing through these miniature mechanical devices because of the large surface-to-volume ratio in micron-scale configurations. We need to reexamine the surface forces in the momentum equation. Owing to their smallness, gas flows experience large Knudsen numbers, and therefore boundary conditions need to be modified. Besides being an enabling technology, MEMS also provide many challenges for fundamental flow-science research

Experimental infection in calves with a specific subtype of verocytotoxin-producing Escherichia coli O157:H7 of bovine origin

<p>Abstract</p> <p>Background</p> <p>In Sweden, a particular subtype of verocytotoxin-producing <it>Escherichia coli </it>(VTEC) O157:H7, originally defined as being of phage type 4, and carrying two <it>vtx</it>₂genes, has been found to cause the majority of reported human infections during the past 15 years, including both sporadic cases and outbreaks. One plausible explanation for this could be that this particular subtype is better adapted to colonise cattle, and thereby may be excreted in greater concentrations and for longer periods than other VTEC O157:H7 subtypes.</p> <p>Methods</p> <p>In an experimental study, 4 calves were inoculated with 10⁹colony forming units (cfu) of strain CCUG 53931, representative of the subtype VTEC O157:H7 (PT4;<it>vtx</it>₂;<it>vtx</it>_2c). Two un-inoculated calves were co-housed with the inoculated calves. Initially, the VTEC O157:H7 strain had been isolated from a dairy herd with naturally occurring infection and the farm had previously also been linked to human infection with the same strain. Faecal samples were collected over up to a 2-month period and analysed for VTEC O157 by immuno-magnetic separation (IMS), and IMS positive samples were further analysed by direct plating to elucidate the shedding pattern. Samples were also collected from the pharynx.</p> <p>Results</p> <p>All inoculated calves proved culture-positive in faeces within 24 hours after inoculation and the un-inoculated calves similarly on days 1 and 3 post-inoculation. One calf was persistently culture-positive for 43 days; in the remainder, the VTEC O157:H7 count in faeces decreased over the first 2 weeks. All pharyngeal samples were culture-negative for VTEC O157:H7.</p> <p>Conclusion</p> <p>This study contributes with information concerning the dynamics of a specific subtype of VTEC O157:H7 colonisation in dairy calves. This subtype, VTEC O157:H7 (PT4;<it>vtx</it>_2;<it>vtx</it>_2c), is frequently isolated from Swedish cattle and has also been found to cause the majority of reported human infections in Sweden during the past 15 years. In most calves, inoculated with a representative strain of this specific subtype, the numbers of shed bacteria declined over the first two weeks. One calf could possibly be classified as a high-shedder, excreting high levels of the bacterium for a prolonged period.</p

Substrate Profiling of Tobacco Etch Virus Protease Using a Novel Fluorescence-Assisted Whole-Cell Assay

Site-specific proteolysis of proteins plays an important role in many cellular functions and is often key to the virulence of infectious organisms. Efficient methods for characterization of proteases and their substrates will therefore help us understand these fundamental processes and thereby hopefully point towards new therapeutic strategies. Here, a novel whole-cell in vivo method was used to investigate the substrate preference of the sequence specific tobacco etch virus protease (TEVp). The assay, which utilizes protease-mediated intracellular rescue of genetically encoded short-lived fluorescent substrate reporters to enhance the fluorescence of the entire cell, allowed subtle differences in the processing efficiency of closely related substrate peptides to be detected. Quantitative screening of large combinatorial substrate libraries, through flow cytometry analysis and cell sorting, enabled identification of optimal substrates for TEVp. The peptide, ENLYFQG, identical to the protease's natural substrate peptide, emerged as a strong consensus cleavage sequence, and position P3 (tyrosine, Y) and P1 (glutamine, Q) within the substrate peptide were confirmed as being the most important specificity determinants. In position P1′, glycine (G), serine (S), cysteine (C), alanine (A) and arginine (R) were among the most prevalent residues observed, all known to generate functional TEVp substrates and largely in line with other published studies stating that there is a strong preference for short aliphatic residues in this position. Interestingly, given the complex hydrogen-bonding network that the P6 glutamate (E) is engaged in within the substrate-enzyme complex, an unexpectedly relaxed residue preference was revealed for this position, which has not been reported earlier. Thus, in the light of our results, we believe that our assay, besides enabling protease substrate profiling, also may serve as a highly competitive platform for directed evolution of proteases and their substrates