On the dynamics of vortex modes within magnetic islands

Recent work investigating the interaction of magnetic islands with micro-turbulence has uncovered the striking observation of large scale vortex modes forming within the island structure [W.A. Hornsby {\it et al.}, Phys. Plasmas {\bf 17} 092301 (2010)]. These electrostatic vortices are found to be the size of the island and are oscillatory. It is this oscillatory behaviour and the presence of turbulence that leads us to believe that the dynamics are related to the Geodesic Acoustic Mode (GAM), and it is this link that is investigated in this paper. Here we derive an equation for the GAM in the MHD limit, in the presence of a magnetic island modified three-dimensional axisymmetric geometry. The eigenvalues and eigenfunctions are calculated numerically and then utilised to analyse the dynamics of oscillatory large-scale electrostatic potential structures seen in both linear and non-linear gyro-kinetic simulations

Making a Universe

For understanding the origin of anisotropies in the cosmic microwave background, rules to construct a quantized universe is proposed based on the dynamical triangulation method of the simplicial quantum gravity. A $d$-dimensional universe having the topology $D^d$ is created numerically in terms of a simplicial manifold with $d$-simplices as the building blocks. The space coordinates of a universe are identified on the boundary surface $S^{d-1}$, and the time coordinate is defined along the direction perpendicular to $S^{d-1}$. Numerical simulations are made mainly for 2-dimensional universes, and analyzed to examine appropriateness of the construction rules by comparing to analytic results of the matrix model and the Liouville theory. Furthermore, a simulation in 4-dimension is made, and the result suggests an ability to analyze the observations on anisotropies by comparing to the scalar curvature correlation of a $S^2$-surface formed as the last scattering surface in the $S^3$ universe.Comment: 27pages,18figures,using jpsj.st

Vertex Operators in 4D Quantum Gravity Formulated as CFT

We study vertex operators in 4D conformal field theory derived from quantized gravity, whose dynamics is governed by the Wess-Zumino action by Riegert and the Weyl action. Conformal symmetry is equal to diffeomorphism symmetry in the ultraviolet limit, which mixes positive-metric and negative-metric modes of the gravitational field and thus these modes cannot be treated separately in physical operators. In this paper, we construct gravitational vertex operators such as the Ricci scalar, defined as space-time volume integrals of them are invariant under conformal transformations. Short distance singularities of these operator products are computed and it is shown that their coefficients have physically correct sign. Furthermore, we show that conformal algebra holds even in the system perturbed by the cosmological constant vertex operator as in the case of the Liouville theory shown by Curtright and Thorn.Comment: 26 pages, rewrote review part concisely, added explanation

Angle-resolved photoemission spectra in the cuprates from the d-density wave theory

Angle-resolved photoemission spectra present two challenges for the d-density wave (DDW) theory of the pseudogap state of the cuprates: (1) hole pockets near $(\pi/2,\pi/2)$ are not observed, in apparent contradiction with the assumption of translational symmetry breaking, and (2) there are no well-defined quasiparticles at the {\it antinodal} points, in contradiction with the predictions of mean-field theory of this broken symmetry state. Here, we show how these puzzles can be resolved.Comment: 4 pages, 3 eps figures, RevTex

Intestinal neuromuscular function after preservation and transplantation

While it is well known that prolonged preservation of the intestinal graft causes severe mucosal damage after transplantation, little is known about the effect on neuromuscular function. The entire small intestine of adult hound dogs was flushed and preserved with cold lactated Ringer's solution and autotransplanted either immediately (n = 6) or after 24 hr (n = 6). Animals undergoing sham operation (n = 4) were used as a control. Fasting motility and the response of the intestinal smooth muscle and enteric nerves to bethanechol (100 μg/kg/0.5 hr, iv) and cisapride (0.5 mg/kg, iv) were determined by a multiple strain gauge method on Postoperative Days 2, 4, 7, 14, 21, and 28. Compared to the control, immediately transplanted grafts and those preserved for 24 hr developed delayed reappearance of migrating myoelectric complexes (MMC), hypercontractile activity, and reduced response to bethanechol and cisapride administration. Animals in the preservation group developed more abnormal fasting motility after transplantation, but responses to bethanechol and cisapride stimulation were not markedly different from those of the immediate group. The reappearance of MMC occurred 3 weeks postoperatively in the preservation group compared to 2 days in the immediate group. The results of our study indicate that intestinal dysmotility is augmented in prolonged-preservation grafts compared to those with brief preservation. The dysmotility was transient and normalized 3 to 4 weeks after surgery. Preservation and reperfusion injury to the neuromuscular system of intestinal grafts are reversible and are attenuated by simple hypothermia

Role of covalency in the ground state properties of perovskite ruthenates: A first principle study using local spin density approximations

We investigate the electronic structure of SrRuO3 and CaRuO3 using full potential linearized augmented plane wave method within the local spin density approximations. The ferromagnetic ground state in SrRuO3 could exactly be described in these calculations and the calculated spin magnetic moment is found to be close to the experimentally observed values. Interestingly, the spin polarized calculations for CaRuO3 exhibit large spin moment as observed in the experiments but the magnetic ground state has higher energy than that in the non-magnetic solution. Various calculations for different structural configurations indicate that Ca-O covalency plays the key role in determining the electronic structure and thereby the magnetic ground state in this system.Comment: 8 figure

Recursion Relations in Liouville Gravity coupled to Ising Model satisfying Fusion Rules

The recursion relations of 2D quantum gravity coupled to the Ising model discussed by the author previously are reexamined. We study the case in which the matter sector satisfies the fusion rules and only the primary operators inside the Kac table contribute. The theory involves unregularized divergences in some of correlators. We obtain the recursion relations which form a closed set among well-defined correlators on sphere, but they do not have a beautiful structure that the bosonized theory has and also give an inconsistent result when they include an ill-defined correlator with the divergence. We solve them and compute the several normalization independent ratios of the well-defined correlators, which agree with the matrix model results.Comment: Latex, 22 page

Teleportation and entanglement distillation in the presence of correlation among bipartite mixed states

The teleportation channel associated with an arbitrary bipartite state denotes the map that represents the change suffered by a teleported state when the bipartite state is used instead of the ideal maximally entangled state for teleportation. This work presents and proves an explicit expression of the teleportation channel for the teleportation using Weyl's projective unitary representation of the space of 2n-tuples of numbers from Z/dZ for integers d>1, n>0, which has been known for n=1. This formula allows any correlation among the n bipartite mixed states, and an application shows the existence of reliable schemes for distillation of entanglement from a sequence of mixed states with correlation.Comment: 12 pages, 1 figur

RNA secondary structure prediction from multi-aligned sequences

It has been well accepted that the RNA secondary structures of most functional non-coding RNAs (ncRNAs) are closely related to their functions and are conserved during evolution. Hence, prediction of conserved secondary structures from evolutionarily related sequences is one important task in RNA bioinformatics; the methods are useful not only to further functional analyses of ncRNAs but also to improve the accuracy of secondary structure predictions and to find novel functional RNAs from the genome. In this review, I focus on common secondary structure prediction from a given aligned RNA sequence, in which one secondary structure whose length is equal to that of the input alignment is predicted. I systematically review and classify existing tools and algorithms for the problem, by utilizing the information employed in the tools and by adopting a unified viewpoint based on maximum expected gain (MEG) estimators. I believe that this classification will allow a deeper understanding of each tool and provide users with useful information for selecting tools for common secondary structure predictions.Comment: A preprint of an invited review manuscript that will be published in a chapter of the book `Methods in Molecular Biology'. Note that this version of the manuscript may differ from the published versio

Magnetostatic surface waves on left-handed materials (LHM)

The nonlinear characteristics of magnetostatic surface waves at microwave frequencies in a layered structure of left-handed material film and a semi-infinite linear ferrite substrate have been investigated. The general dispersion relation is derived and analyzed numerically. It is found that it has two solutions for ω (k), one represents a physical solution and other unacceptable. The effects of the applied external magnetic field around the proposed region have also been examined