A comprehensive look into the volatile exometabolome of enteroxic and non-enterotoxic Staphylococcus aureus strains

Staphylococcal food poisoning is a disease that originates significant health and economic losses and is caused by Staphylococcus aureus strains able to produce enterotoxins. The aim of this work is to go further on the study of the volatile exometabolome of S. aureus using an advanced gas chromatographic technique. Enterotoxic and non-enterotoxic strains were assessed. The volatile exometabolome profile comprised 240 volatiles belonging to ten chemical families. This volatiles were mainly by-products of branched-chain amino acids and methionine degradation, pyruvate metabolism, diacetyl pathway, oxidative stress and carotenoid cleavage. Metabolites released by the first two pathways were produced in higher contents by the enterotoxic strains. This study add further insights to S. aureus volatile exometabolome, and also shows that by applying it, it is possible to distinguish strains of S. aureus by the number of produced enterotoxins, which is especially important from the food safety point of view.publishe

Data on yields, sugars and glycosidic-linkage analyses of coffee arabinogalactan and galactomannan mixtures and optimization of their microwave assisted extraction from spent coffee grounds

The data presented here are related to the research paper entitled "Structural features of spent coffee grounds water-soluble polysaccharides: towards tailor-made microwave assisted extractions" [1]. Microwave assisted extraction conditions were applied to spent coffee grounds for recovery of polysaccharides, namely arabinogalactans and galactomannans. Following an experimental design testing temperature, time, and alkali conditions as influence factors during microwave assisted extraction, this article reports the response data for the total extracted mass, sugars yield (including arabinogalactans and galactomannans total content, and mass ratio), and structural features (including degree of polymerization and degree of branching) for each set of operating conditions. In addition, it provides gas chromatography-mass spectrometry (GC-MS) chromatograms (and respective GC-MS spectra) of arabinogalactan and galactomannan mixtures with different structural features corresponding to representative microwave treatment conditions.publishe

Determination of paralytic shellfish toxins using potentiometric electronic tongue

Paralytic shellfish toxins (PSTs) are monitored in commercial bivalves in several countries in the world due to their toxicity to human consumers. The present work examines the application of an electronic tongue based on potentiometric chemical sensors to the quantification of PSTs in mussel extracts. The electronic tongue comprised six miniaturized sensors with solid inner contact and plasticized polyvinylchloride membranes. Calibration models were calculated by PLS regression using measurements in sixteen model mixed solutions containing four PSTs commonly found in bivalves from the Portuguese coast. Transfer of the calibration models to sample matrix was done by joint-PLS regression using measurements in five mussel extracts spiked with PST standards. Quantification of PSTs in extracts of naturally contaminated mussels, using the electronic tongue and updated calibration model, was in agreement with values of the chromatographic reference method. Those sensors alone or combined in an electronic tongue are useful tools for rapid screening of PST in bivalves.publishe

Top-down lipidomics of low density lipoprotein reveal altered lipid profiles in advanced chronic kidney disease

This study compared the molecular lipidomic profi le of LDL in patients with nondiabetic advanced renal disease and no evidence of CVD to that of age-matched controls, with the hypothesis that it would reveal proatherogenic lipid alterations. LDL was isolated from 10 normocholesterolemic patients with stage 4/5 renal disease and 10 controls, and lipids were analyzed by accurate mass LC/MS. Top-down lipidomics analysis and manual examination of the data identifi ed 352 lipid species, and automated comparative analysis demonstrated alterations in lipid profi le in disease. The total lipid and cholesterol content was unchanged, but levels of triacylglycerides and N -acyltaurines were signifi cantly increased, while phosphatidylcholines, plasmenyl ethanolamines, sulfatides, ceramides, and cholesterol sulfate were signifi cantly decreased in chronic kidney disease (CKD) patients. Chemometric analysis of individual lipid species showed very good discrimination of control and disease sample despite the small cohorts and identifi ed individual unsaturated phospholipids and triglycerides mainly responsible for the discrimination. These fi ndings illustrate the point that although the clinical biochemistry parameters may not appear abnormal, there may be important underlying lipidomic changes that contribute to disease pathology. The lipidomic profi le of CKD LDL offers potential for new biomarkers and novel insights into lipid metabolism and cardiovascular risk in this disease. -Reis, A., A. Rudnitskaya, P. Chariyavilaskul, N. Dhaun, V. Melville, J. Goddard, D. J. Webb, A. R. Pitt, and C. M. Spickett. Topdown lipidomics of low density lipoprotein reveal altered lipid profi les in advanced chronic kidney disease. J. Lipid Res. 2015

A comparison of five lipid extraction solvent systems for lipidomic studies of human LDL

Lipidome profile of fluids and tissues is a growing field as the role of lipids as signaling molecules is increasingly understood, relying on an effective and representative extraction of the lipids present. A number of solvent systems suitable for lipid extraction are commonly in use, though no comprehensive investigation of their effectiveness across multiple lipid classes has been carried out. To address this, human LDL from normolipidemic volunteers was used to evaluate five different solvent extraction protocols [Folch, Bligh and Dyer, acidified Bligh and Dyer, methanol (MeOH)-tert-butyl methyl ether (TBME), and hexane-isopropanol] and the extracted lipids were analyzed by LC-MS in a high-resolution instrument equipped with polarity switching. Overall, more than 350 different lipid species from 19 lipid subclasses were identified. Solvent composition had a small effect on the extraction of predominant lipid classes (triacylglycerides, cholesterol esters, and phosphatidylcholines). In contrast, extraction of less abundant lipids (phosphatidylinositols, lyso-lipids, ceramides, and cholesterol sulfates) was greatly influenced by the solvent system used. Overall, the Folch method was most effective for the extraction of a broad range of lipid classes in LDL, although the hexane-isopropanol method was best for apolar lipids and the MeOH-TBME method was suitable for lactosyl ceramides

Modified kraft lignin for bioremediation applications

Kraft lignin (KL) from industrial pulping of E. globulus wood was subjected to the oxidative modification with the aim to produce sorbent mimicking humic matter for the bioremediation purposes. Lignin was oxidized by polyoxometalate Na(5)[PMo(10)V(2)O(40)] (POM), solely or in the presence of laccase, under pre-selected aerobic conditions (50-60°C, 1-2h, oxygen pressure 5 bar). The most pronounced lignin oxidation without its depolymerisation was observed in the reaction system POM/O(2). Modified lignins possessed increased amounts of COOH (up to 15 %) and CO (up to 500 %) groups, when compared to unmodified KL, and significantly higher molecular weights. Sorption capacity of KL before and after modification towards transition metals (cadmium (II) and mercury (II)) and triazine pesticide (atrazine) was assessed in batch experiments under equilibrium conditions. KL oxidation improved sorption capacity towards transition metals (up to 15 %) but not necessarily the uptake of atrazine that was higher for unmodified KL.publishe

Studies on the redox turnover of polyoxometalates using potentiometric chemical sensors

Redox reactions of Keggin-type polyoxometalates (POM), [PVxMo12 xO40](3+x) (x = 1, 2), have been studied for the first time employing an array of potentiometric chemical sensors. Variations in the concentrations of vanadyl ions (VO2+) during the redox reactions of POMs were followed in the real-time. Differences in the vanadyl concentration profiles observed during re-oxidation of di- and mono-substituted POMs allow us to infer principally different re-oxidation mechanisms for these compounds. At the beginning of the oxidation of [PVIV2Mo10O40]7 under air an instant release of VO2+ (ca. 7%) from the coordination sphere of POM to the outside solution was detected. VO2+ concentration decreased rapidly while oxidation proceeded indicating return of vanadyl back to the coordination sphere of [PVV2Mo10O40]5 . This finding indicates the participation of VO2+ outside Keggin structure in the re-oxidation mechanism of di-substituted POM. No release of VO2+ was detected during re-oxidation of [PVIVMo11O40]5 by air oxygen in the presence of laccase (this POM is not oxidisable by air at low temperature and atmospheric pressure). Biocatalysis of [PVIVMo11O40]5 oxidation may include activation of the molecular oxygen by the prosthetic group of laccase thus allowing the oxidation of V(IV) inside the Keggin structure of POM, i.e., without vanadyl release into the outside solution.publishe

D-Shaped POF Sensors for Refractive Index Sensing—The Importance of Surface Roughness

In this study the influence of the surface roughness on the transmission capacities of D-shaped plastic optical fibers (POFs) and sensors performance was investigated. Five D-shaped POF sensors were produced and characterized for refractive index sensing between 1.33 and 1.41. The sensors were characterized using a low-cost optical sensing system based on the variation of the transmitted light though the POF with refractive index changes (RI). Higher surface roughness increases the scattering losses through the POF and influences the sensors’ performance; therefore, a balance must be attained. Generally, the best performance was achieved when the sensing region was polished with P600 sandpaper as a final polishing step. Polishing with sandpapers of lower grit size resulted in lower scattering, higher linearity of the sensor response and generally lower performance for RI sensing. A sensor resolution of 10−3−10−4 RIU, dependent on the value of the external refractive index, was obtained through simple and low-cost manufacturing procedures. The obtained results show the importance of surface roughness in the development of POF sensors which can be used in several applications, such as for water quality assessment

Metabolomic-Based Strategy for Fingerprinting of Sambucus nigra L. Berry Volatile Terpenoids and Norisoprenoids: Influence of Ripening and Cultivar

The integration of plant metabolomics to support preharvest fruit development studies can provide important insights into the biochemical mechanisms involved and lately support producers on harvesting management. A metabolomic-based strategy for fingerprinting of volatile terpenoids and norisoprenoids from Sambucus nigra L. berries from three cultivars, through ripening, was established. From 42 monoterpenic, 20 sesquiterpenic, and 14 norisoprenoid compounds, 48 compounds are reported for the first time as S. nigra berries components. Chemometric tools revealed that ripening was the factor that influenced more the volatile fraction profile and physicochemical parameters (pH, TS, and TSS), followed by cultivar. For the unripe stages, a higher overall content of the studied metabolites was observed, which gradually decreased over the ripening stages, being consistent for the three cultivars. These trends were mainly ruled by limonene, p-cymene, aromadendrene, beta-caryophyllene, and dihydroedulan, which might therefore be used by producers as an additional simple decision making tool in conjunction with physicochemical parameters