Effect of artificial warren size on a restocked European wild rabbit population

From the time since the decline of the wild rabbit Oryctolagus cuniculus in southern Europe, various techniques and methods have been explored with a view to restoring wild rabbit populations or increasing rabbit resilience, for both conservation and game purposesRabbit restocking and habitat management are among the measures most often appliedSome efforts have been made to increase refuges for wild rabbits, mainly through the construction of artificial warrensThe present study evaluates the response of a wild rabbit population introduced to artificial warrens of varying sizesThis involves comparisons of the density of rabbits in the warrens, rabbit density change between seasons of low and high rabbit population density and the productivity index for large and small warrens in rabbit populations living under semi-natural conditionsOur results show that large warrens had higher rabbit abundance than had small warrens, but significantly lower rabbit densityNo differences in density increase or productivity index were found with respect to warren sizeThe results suggest that it is preferable to build many small warrens for conservation of wild rabbit populations, but, in the event that only a few warrens are built, it is advisable that they be large.C. Rouco was supported by a postdoctoral grant from the regional government of Castilla-La Mancha (JCCM) and the European Social Fund. Funding was provided by the projects by Confederacion Hidrografica del Guadalquivir, by the Projects CGL2005-02340/BOS, CGL2009-11665, FAU2006-0014-C-02-02, POII09-0099-2557 and PEII09-0097-436.Peer Reviewe

A longer confinement period favors European wild rabbit (Oryctolagus cuniculus) survival during soft releases in low-cover habitats

Rabbit restocking is widely used in Spain for conservation and/or hunting purposes; however, the success of rabbit restocking is generally low. Thus, many studies have assessed ways to reduce this problem, one of which is the use of a ¿soft-release¿ procedure whereby rabbits are acclimated to their release site for a variable time period prior to release. This study assessed the short-term effects of two soft-release confinement periods on the survival of rabbits during an experimental restocking program carried out in southwest Spain. The post-release survival rate of rabbits confined at the release site for six nights was significantly higher than that of rabbits confined for three nights. The longer acclimation period after rabbit translocation minimized mortality while rabbits adapted to their new environment.C. Rouco was supported by a postdoctoral grant from the regional government of Castilla-La Mancha (JCCM), and the European Social Fund. Funding was provided by the projects by Confederación Hidrográfica del Guadalquivir, by the Projects CGL2005-02340/BOS, FAU2006-0014-C-02-02, PAI06-170, and PREG-05-022.Peer Reviewe

Artery/Vein Vessel Tree Identification in Near-Infrared Reflectance Retinographies

This version of the article has been accepted for publication, after peer review and is subject to Springer Nature’s AM terms of use, but is not the Version of Record and does not reflect post-acceptance improvements, or any corrections. The Version of Record is available online at: https://doi.org/10.1007/s10278-019-00235-x[Abstract]: An accurate identification of the retinal arteries and veins is a relevant issue in the development of automatic computer-aided diagnosis systems that facilitate the analysis of different relevant diseases that affect the vascular system as diabetes or hypertension, among others. The proposed method offers a complete analysis of the retinal vascular tree structure by its identification and posterior classification into arteries and veins using optical coherence tomography (OCT) scans. These scans include the near-infrared reflectance retinography images, the ones we used in this work, in combination with the corresponding histological sections. The method, firstly, segments the vessel tree and identifies its characteristic points. Then, Global Intensity-Based Features (GIBS) are used to measure the differences in the intensity profiles between arteries and veins. A k-means clustering classifier employs these features to evaluate the potential of artery/vein identification of the proposed method. Finally, a post-processing stage is applied to correct misclassifications using context information and maximize the performance of the classification process. The methodology was validated using an OCT image dataset retrieved from 46 different patients, where 2,392 vessel segments and 97,294 vessel points were manually labeled by an expert clinician. The method achieved satisfactory results, reaching a best accuracy of 93.35% in the identification of arteries and veins, being the first proposal that faces this issue in this image modality.This work is supported by the Instituto de Salud Carlos III, Government of Spain and FEDER funds of the European Union through the DTS18/00136 research project and by the Ministerio de Economía y Competitividad, Government of Spain through the DPI2015-69948-R research project. Also, this work has received financial support from the European Union (European Regional Development Fund—ERDF); the Xunta de Galicia, Centro singular de investigación de Galicia accreditation 2016–2019, Ref. ED431G/01; and Grupos de Referencia Competitiva, Ref. ED431C 2016-047.Xunta de Galicia; ED431G/01Xunta de Galicia; ED431C 2016-04

Experimental study on the effect of cover and vaccination on the survival of juvenile European rabbits

et al.In Mediterranean ecosystems, the European rabbit is a keystone species that has declined dramatically, with profound implications for conservation and management. Predation and disease acting on juveniles are considered the likely causes. In the field, these processes are managed by removing predators, increasing cover to reduce predation risk and by vaccinating against myxomatosis. These manipulations can be costly and, when protected predators are killed, they can also be damaging to conservation interests. Our goal was to test the effectiveness of cover and vaccination on juvenile survival in two large enclosures, free of mammalian predators, by adding cover and vaccinating juveniles. Rabbit warrens were our experimental unit, with nine replicates of four treatments: control, cover, vaccination, and cover and vaccination combined. Our results showed that improved cover systematically increased juvenile rabbit survival, whereas vaccination had no clear effect and the interactive effect was negligible. Our experimental data suggest that improved cover around warrens is an effective way of increasing rabbit abundance in Mediterranean ecosystems, at least when generalist mammalian predators are scarce. In contrast the vaccination programme was of limited benefit, raising questions about its efficacy as a management tool.Funding was provided by Confederación Hidrográfica del Guadalquivir and the projects CGL2009-11665/BOS, PEII 09-0097-4363, POII09-0099-2557. C.F. was supported by a PhD grant (Ref. SFRH/BD/22084/2005) funded by the Fundaçao para a Ciência e Tecnologia of the Ministério da Ciência, Tecnologia e Ensino Superior, Portuguese government. S.R. was supported by the Centre for Ecology and Hydrology and a grant from NERC.Peer Reviewe

La variabilidad de la circulación meridiana del océano atlántico en simulaciones del último milenio con el modelo climático de circulación general ECHO-G

Ponencia presentada en: XXX Jornadas Científicas de la AME y el IX Encuentro Hispano Luso de Meteorología celebrado en Zaragoza, del 5 al 7 de mayo de 2008.En este trabajo se analiza la variabilidad de la AMOC a partir de varias simulaciones realizadas con el Modelo ECHO-G: una simulación de control de mil años (CTRL), dos simulaciones forzadas del último milenio (FOR1 y FOR2) y dos simulaciones forzadas de los escenarios de futuro A2 y B2

Nutritional ecology of European rabbit (Oryctolagus cuniculus): Factors affecting chemical composition of gastric content

[EN] Nutritional ecology seeks to unravel the extensive web of nutritional links that directs animals in their interactions with their ecological and social environments. European rabbit (Oryctolagus cuniculus) populations its endemic locations are declining and it is considered a keystone species of the Mediterranean ecosystem prompteing the interest in its conservation. The main aim of this study was to determine the nutritional composition of the diet of European rabbits through the relative and absolute chemical composition of the gastric content. To address this objective, gastric content was collected from 80 European rabbits in a Mediterranean area for the analysis of its chemical composition. To this end, gastric content was analyzed for dry matter (DM), organic matter (OM), ash, crude protein (CP), highly digestible nonnitrogenous nutrients (HDNN), neutral detergent fibre (NDF), acid detergent fibre (ADF) and lignin. The rabbits were divided into two groups: EMPTY and FULL, depending on the level of stomach filling, directly related to food intake. Our results revealed a positive correlation between the rabbits weight with DM in the gastric content, total gastric content with DM in the gastric content, and DM in gastric content with all chemical parameters analysed. The mean relative values obtained were 8.8%, 25.5%, 40.4% and 25.4%, for ash, CP, NDF and HDNN, respectively. Moreover, EMPTY rabbits had both a proportional (+19%, p = 0.002 and -40%; p = 0.004, on NDF and HDNN, respectively) and absolute (-38%, p = 0.014, -52%; p = 0.012, -52%; p = 0.011 and +83%; p = 0.008 for OM, ash, HDNN, and lignin, respectively) different proportion of nutrients in gastric contents than FULL animals. Since there is a connection between this availability and the fitness of this species, understanding the chemical composition of the rabbit's diet can be utilised to delve into its biology. Our study provides information that will help elucidate the factors affecting the chemical composition of the gastric content of European rabbits to assist land use planners and conservationists in identifying sites for conservation in Mediterranean ecosystems.Regional Ministry of Innovation, Universities, Science and Digital Society of the Generalitat Valenciana, Grant/Award Number: GV/2021/115Marín-García, PJ.; Llobat, L.; Aguayo-Adán, JA.; Franch, J.; Cambra López, M.; Blas Ferrer, E.; Pascual Amorós, JJ.... (2023). Nutritional ecology of European rabbit (Oryctolagus cuniculus): Factors affecting chemical composition of gastric content. Journal of Animal Physiology and Animal Nutrition. 107(6):1495-1501. https://doi.org/10.1111/jpn.1384914951501107

Unravelling the Role of Metabolites for Detecting Physiological State of Wild Animals: European Rabbit's (Oryctolagus cuniculus) Case

[EN] The main aim of this work was to know the possible potential of certain metabolites as biomarkers of the European wild rabbit to deepen the biological knowledge of this species and complement specific conservation programs. The main finding of our paper is that, regardless of the weight of the animals and their reproductive state, females show greater feed intake capacity than males, and their metabolism is affected. Furthermore, different reproductive stages are related to different metabolic phenotypes, metabolic behaviors, and metabolic profiles. There are indications of better optimization of resources by females, and evidence of the importance of some metabolites in the reproductive fitness of the species. European wild rabbit (Oryctolagus cuniculus) has been defined as a keystone species in the Mediterranean ecosystem. Rabbits have been classed as "endangered" by the IUCN within their native range. In this sense, animal nutrition may play a fundamental and limiting role in the conservation of wild species. The overarching goal of ecological nutrition is to unravel the extensive web of nutritional links that direct animals in their interactions with their ecological environments. The main aim of this work was to evaluate the effect of different feed intake, geographic location, animal sex, and reproductive stage on glucose, non-esterified fatty acids (NEFA), and plasmatic urea nitrogen (PUN), albumin, glutamate, and total protein metabolites. Additionally, we examined the potential of these metabolites as biomarkers. Full stomach contents and blood samples were collected from European wild rabbits (n = 89) for the analysis of the metabolites described above. Our work shows that the levels of these metabolites are affected by the sex of the animals, as well as by their reproductive stage (glucose, NEFA and albumin). There were signs of better optimisation of resources by females than by other groups of animals. These data may be interesting in the study of nutritional components that could be affecting physiological state of this species.This study was supported by the Regional Ministry of Innovation, Universities, Scienceand Digital Society of the Generalitat Valenciana (GV/2021/115 and CIBEST/2021/157) and Universidad Cardenal Herrera CEU (PUENTE22-03). This study was partially supported by a project granted by the Partnership for Research and Innovation in the Mediterranean Area (PRIMA) and funded by the Spanish Ministry of Science, Innovation and University (REF: PRIMAS2-11-PCI2019-103698). The APC was invited to Pablo Jesus Marin Garcia.Marín-García, PJ.; Llobat, L.; Rouco, C.; Aguayo-Adán, JA.; Larsen, T.; Cambra López, M.; Blas Ferrer, E.... (2022). Unravelling the Role of Metabolites for Detecting Physiological State of Wild Animals: European Rabbit's (Oryctolagus cuniculus) Case. Animals. 12(22):1-9. https://doi.org/10.3390/ani1222322519122

The nutritional strategy of European rabbits is affected by age and sex: Females eat more and have better nutrient optimisation

[EN] The ecological interest in the European rabbit (Oryctolagus cuniculus) has grown since it was declared an endangered species. Nutrition is fundamental in its dispersion and the key to its success. This is the main reason why knowledge of their nutritional preferences/requirements could play a fundamental role in rabbit biology and, therefore, in their conservation. The objectives of the work will be to elucidate how age and sex affect both nutritional preferences/requirements, and the nutrient optimisation of European rabbits. To address this gap, 70 wild European rabbits were studied. The rabbits were divided according to their age: adult (n = 43) and young (n = 27). Two groups were differentiated according to the adult rabbits' sex: females (n = 28) and males (n = 15). We analysed the relative (%) and absolute (g) chemical composition of the rabbits' gastric contents: dry matter (DM), ashes (ASH), crude protein (CP), ether extract (EE), neutral detergent fibre (NDF), acid detergent fibre (ADF), and lignin, hemicelluloses and celluloses, highly digestible nonnitrogenous nutrients (HDNN: fat, starch, and soluble fibre), well from the blood was analysed with plasmatic urea nitrogen (PUN), nonesterified fatty acid (NEFA) and glucose (GLU). As a nutrient optimisation measure, the following indices between blood metabolites and stomach content were calculated: PUN/CP total content, NEFA/DM total content and GLU/DM total content ratios. Our works showed that age and sex affected the nutritional strategy of rabbits. Regarding age: adults showed lower CP (-14%; p = 0.0217) and higher HDNN (+21%; p = 0.0399) relative content than young rabbits, and absolute amount of most nutrients: DM (+59%; p = 0.001), OM (+43%; p = 0.0049), ASH (+54%; p = 0.0085), Hemicelluloses (+73%; p = 0.0084), Cellulose (+27%; p = 0.0452), and HDNN (+63%; p = 0.0012). In addition, adults showed better nutrient optimisation. Sex did not affect the relative chemical composition of the gastric content, but it showed a clear higher gastric content by females (+85%; p < 0.0001) and higher intake of most of the absolute chemical components: DM (+64%; p < 0.001), CP (+56%; p = 0.0005), OM (+58%; p = 0.0001), ASH (+44%; p = 0.0123), HDNN (+39%; p = 0.001), NDF (+59%; p = 0.001), ADF (+64%; p = 0.0003), lignin (+82%; p = 0.0036) and cellulose (+58%; p = 0.0002). Finally, we observed that females had better nutrient optimisation than males. This works supports the idea that feeding ecology and nutrition are particularly relevant to reproductive success and fitness in wild animals.Universidad Cardenal Herrera-CEU, Grant/Award Number: PUENTE22/03; Regional Ministry of Innovation, Universities, Science and Digital Society of the Generalitat Valenciana, Grant/Award Numbers: GV/2021/115, CIBEST/2021/157Marín-García, PJ.; Llobat, L.; Aguayo-Adán, JA.; Larsen, T.; Cambra López, M.; Blas Ferrer, E.; Pascual Amorós, JJ.... (2023). The nutritional strategy of European rabbits is affected by age and sex: Females eat more and have better nutrient optimisation. Journal of Animal Physiology and Animal Nutrition. 107(5):1294-1301. https://doi.org/10.1111/jpn.1382612941301107

Evolution of Antimicrobial Consumption During the First Wave of COVID-19 Pandemic

Background: The first wave of COVID-19 pandemic may have significantly impacted antimicrobial consumption in hospitals. The objective of this study was to assess the evolution of antimicrobial consumption during this period. Methods : A retrospective quasi-experimental before-after study was conducted in a Spanish tertiary care hospital. The study compared two periods: pre-pandemic, from January 2018 to February 2020, and during the COVID-19 pandemic from March to June 2020. Antimicrobial consumption was analyzed monthly as defined daily doses (DDD)/100 bed-days and overall hospital and ICU consumption were evaluated. Results: An increase in the hospital consumption was noticed. Although only ceftaroline achieved statistical significance (p = 0.014), a rise was observed in most of the studied antimicrobials. A clear temporal pattern was detected. While an increase in ceftriaxone and azithromycin was observed during March, an increment in the consumption of daptomycin, carbapenems, linezolid, ceftaroline, novel cephalosporin/β-lactamase inhibitors or triazoles during April-May was noticed. In the ICU, these findings were more evident, namely ceftriaxone (p = 0.029), carbapenems (p = 0.002), daptomycin (p = 0.002), azithromycin (p = 0.030), and linezolid (p = 0.011) but followed a similar temporal pattern. Conclusion : An increase in the antimicrobial consumption during the first wave of COVID-19 pandemic was noticed, especially in the ICU. Availability of updated protocols and antimicrobial stewardship programs are essential to optimize these outcomes

Biometrical analysis reveals major differences between the two subspecies of the European rabbit

The climatic oscillations that have occurred in the last few million years have strongly affected species distribution ranges. Highly divergent genetic lineages arose, some of which correspond to recognized subspecies that currently occupy small geographical areas. Understanding the implications of the genetic differences between these subspecies is crucial for proper conservation of Evolutionarily Significant Units. We use the two European rabbit subspecies, Oryctolagus cuniculus cuniculus and O. c. algirus, in the Iberian Peninsula as a model to investigate the repercussions at the biometric level of their largely recognized genetic differentiation. To accomplish this we analysed the ear and hind foot length, and the body mass of 999 adult rabbits from 27 locations across the distribution range of both subspecies in their native range, the Iberian Peninsula. Our results show biometric differences between the two subspecies, also explained by geographical location and sex, O. c. algirus being lighter and having shorter ear and hind foot lengths. We examine these findings under an evolutionary framework, and discuss their implications for current conservation efforts. Future research should focus on the ecological implications of these biometric differences, namely potential different habitat use and anti-predatory strategies in the species' native range.This study was partially funded by Projects PAI06-170, VP-0119-07,POII09-0099-2557, CGL2009-11665, 2012-30E060, CGL2013-43197, CGL2013-43197-R, FCT research project (PTDC/BIA-EVF/111368/2009), and ‘Genomics Applied to Genetic Resources’ co-funded by North Portugal Regional Operational Programme 2007/2013 (ON.2 – O Novo Norte), under the National Strategic Reference Framework (NSRF), through the European Regional Development Fund (ERDF). C.F. was supported by a PhD grant (Ref. SFRH/BD/22084/2005) and a postdoctoral grant (Ref. SFRH/BPD/88643/2012), and J.B.-A. by a postdoctoral grant (Ref. SFRH/BPD/65464/2009) all from the Fundaçao para a Ciência e Tecnologia of the Ministêrio da Ciência, Tecnologia e Ensino Superior, Portuguese government. C.F. is currently supported by a Marie Curie Out going International Fellowship for Career Development (PIOF-GA-2013-621571) within the 7th Framework Programme of the European Union. M.D.-M. is currently funded by Consejería de Economía, Innovación, Ciencia y Empleo of Junta de Andalucía, and the European Union’s SeventhFramework Programme for research, technological development and demonstration under grant agreement 267226. C.A.R.-S. was supported by a doctoral grant from the National Council of Science and Technology of Mexico (CONACyT). P.C.A. was supportedby an FCT sabbatical grant (SFRH/BSAB/1278/2012) and by FLAD (Luso-American Foundation).Peer Reviewe