Comparison of Precision of Biomass Estimates in Regional Field Sample Surveys and Airborne LiDAR-Assisted Surveys in Hedmark County, Norway

Airborne scanning LiDAR (Light Detection and Ranging) has emerged as a promising tool to provide auxiliary data for sample surveys aiming at estimation of above-ground tree biomass (AGB), with potential applications in REDD forest monitoring. For larger geographical regions such as counties, states or nations, it is not feasible to collect airborne LiDAR data continuously ("wall-to-wall") over the entire area of interest. Two-stage cluster survey designs have therefore been demonstrated by which LiDAR data are collected along selected individual flight-lines treated as clusters and with ground plots sampled along these LiDAR swaths. Recently, analytical AGB estimators and associated variance estimators that quantify the sampling variability have been proposed. Empirical studies employing these estimators have shown a seemingly equal or even larger uncertainty of the AGB estimates obtained with extensive use of LiDAR data to support the estimation as compared to pure field-based estimates employing estimators appropriate under simple random sampling (SRS). However, comparison of uncertainty estimates under SRS and sophisticated two-stage designs is complicated by large differences in the designs and assumptions. In this study, probability-based principles to estimation and inference were followed. We assumed designs of a field sample and a LiDAR-assisted survey of Hedmark County (HC) (27,390 km2), Norway, considered to be more comparable than those assumed in previous studies. The field sample consisted of 659 systematically distributed National Forest Inventory (NFI) plots and the airborne scanning LiDAR data were collected along 53 parallel flight-lines flown over the NFI plots. We compared AGB estimates based on the field survey only assuming SRS against corresponding estimates assuming two-phase (double) sampling with LiDAR and employing model-assisted estimators. We also compared AGB estimates based on the field survey only assuming two-stage sampling (the NFI plots being grouped in clusters) against corresponding estimates assuming two-stage sampling with the LiDAR and employing model-assisted estimators. For each of the two comparisons, the standard errors of the AGB estimates were consistently lower for the LiDAR-assisted designs. The overall reduction of the standard errors in the LiDAR-assisted estimation was around 40-60% compared to the pure field survey. We conclude that the previously proposed two-stage model-assisted estimators are inappropriate for surveys with unequal lengths of the LiDAR flight-lines and new estimators are needed. Some options for design of LiDAR-assisted sample surveys under REDD are also discussed, which capitalize on the flexibility offered when the field survey is designed as an integrated part of the overall survey design as opposed to previous LiDAR-assisted sample surveys in the boreal and temperate zones which have been restricted by the current design of an existing NFI

Localized retroprocessing as a model of intron loss in the plant mitochondrial genome

Loss of introns in plant mitochondrial genes is commonly explained by retroprocessing. Under this model, an mRNA is reverse transcribed and integrated back into the genome, simultaneously affecting the contents of introns and edited sites. To evaluate the extent to which retroprocessing explains intron loss, we analyzed patterns of intron content and predicted RNA editing for whole mitochondrial genomes of 30 species in the monocot order Alismatales. In this group, we found an unusually high degree of variation in the intron content, even expanding the hitherto known variation among angiosperms. Some species have lost some two-third of the cis-spliced introns. We found a strong correlation between intron content and editing frequency, and detected 27 events in which intron loss is consistent with the presence of nucleotides in an edited state, supporting retroprocessing. However, we also detected seven cases of intron loss not readily being explained by retroprocession. Our analyses are also not consistent with the entire length of a fully processed cDNA copy being integrated into the genome, but instead indicate that retroprocessing usually occurs for only part of the gene. In some cases, several rounds of retroprocessing may explain intron loss in genes completely devoid of introns. A number of taxa retroprocessing seem to be very common and a possibly ongoing process. It affects the entire mitochondrial genome

Mitochondrial genome evolution in Alismatales: Size reduction and extensive loss of ribosomal protein genes

<div><p>The order Alismatales is a hotspot for evolution of plant mitochondrial genomes characterized by remarkable differences in genome size, substitution rates, RNA editing, retrotranscription, gene loss and intron loss. Here we have sequenced the complete mitogenomes of <i>Zostera marina</i> and <i>Stratiotes aloides</i>, which together with previously sequenced mitogenomes from <i>Butomus</i> and <i>Spirodela</i>, provide new evolutionary evidence of genome size reduction, gene loss and transfer to the nucleus. The <i>Zostera</i> mitogenome includes a large portion of DNA transferred from the plastome, yet it is the smallest known mitogenome from a non-parasitic plant. Using a broad sample of the Alismatales, the evolutionary history of ribosomal protein gene loss is analyzed. In <i>Zostera</i> almost all ribosomal protein genes are lost from the mitogenome, but only some can be found in the nucleus.</p></div

Lidar sampling for large-area forest characterization: A review

The ability to use digital remotely sensed data for forest inventory is often limited by the nature of the measures, which, with the exception of multi-angular or stereo observations, are largely insensitive to vertically distributed attributes. As a result, empirical estimates are typically made to characterize attributes such as height, volume, or biomass, with known asymptotic relationships as signal saturation occurs. Lidar (light detection and ranging) has emerged as a robust means to collect and subsequently characterize vertically distributed attributes. Lidar has been established as an appropriate data source for forest inventory purposes; however, large area monitoring and mapping activities with lidar remain challenging due to the logistics, costs, and data volumes involved.The use of lidar as a sampling tool for large-area estimation may mitigate some or all of these problems. A number of factors drive, and are common to, the use of airborne profiling, airborne scanning, and spaceborne lidar systems as sampling tools for measuring and monitoring forest resources across areas that range in size from tens of thousands to millions of square kilometers. In this communication, we present the case for lidar sampling as a means to enable timely and robust large-area characterizations. We briefly outline the nature of different lidar systems and data, followed by the theoretical and statistical underpinnings for lidar sampling. Current applications are presented and the future potential of using lidar in an integrated sampling framework for large area ecosystem characterization and monitoring is presented. We also include recommendations regarding statistics, lidar sampling schemes, applications (including data integration and stratification), and subsequent information generation. © 2012

A multi-technology analysis of the 2017 North Korean nuclear test

On 3 September 2017 official channels of the Democratic People's Republic of Korea announced the successful test of a thermonuclear device. Only seconds to minutes after the alleged nuclear explosion at the Punggye-ri nuclear test site in the mountainous region in the country's northeast at 03:30:02 (UTC), hundreds of seismic stations distributed all around the globe picked up strong and distinct signals associated with an explosion. Different seismological agencies reported body wave magnitudes of well above 6.0, consequently estimating the explosive yield of the device on the order of hundreds of kT TNT equivalent. The 2017 event can therefore be assessed as being multiple times larger in energy than the two preceding North Korean events in January and September 2016. This study provides a multi-technology analysis of the 2017 North Korean event and its aftermath using a wide array of geophysical methods. Seismological investigations locate the event within the test site at a depth of approximately 0.6&thinsp;km below the surface. The radiation and generation of P- and S-wave energy in the source region are significantly influenced by the topography of the Mt. Mantap massif. Inversions for the full moment tensor of the main event reveal a dominant isotropic component accompanied by significant amounts of double couple and compensated linear vector dipole terms, confirming the explosive character of the event. The analysis of the source mechanism of an aftershock that occurred around 8&thinsp;min after the test in the direct vicinity suggest a cavity collapse. Measurements at seismic stations of the International Monitoring System result in a body wave magnitude of 6.2, which translates to an yield estimate of around 400&thinsp;kT TNT equivalent. The explosive yield is possibly overestimated, since topography and depth phases both tend to enhance the peak amplitudes of teleseismic P waves. Interferometric synthetic aperture radar analysis using data from the ALOS-2 satellite reveal strong surface deformations in the epicenter region. Additional multispectral optical data from the Pleiades satellite show clear landslide activity at the test site. The strong surface deformations generated large acoustic pressure peaks, which were observed as infrasound signals with distinctive waveforms even at distances of 401&thinsp;km. In the aftermath of the 2017 event, atmospheric traces of the fission product 133Xe were detected at various locations in the wider region. While for 133Xe measurements in September 2017, the Punggye-ri test site is disfavored as a source by means of atmospheric transport modeling, detections in October 2017 at the International Monitoring System station RN58 in Russia indicate a potential delayed leakage of 133Xe at the test site from the 2017 North Korean nuclear test.</p

Efficacy and safety of givosiran for acute hepatic porphyria: Final results of the randomized phase III ENVISION trial

Background &amp; Aims: Acute hepatic porphyria (AHP) is caused by defects in hepatic heme biosynthesis, leading to disabling acute neurovisceral attacks and chronic symptoms. In ENVISION (NCT03338816), givosiran treatment for 6 months reduced attacks and other disease manifestations, compared with placebo. Here we report data from the 36-month final analysis of ENVISION. Methods: Ninety-four patients with AHP (age ≥12 years) and recurrent attacks were randomized 1:1 to monthly double-blind subcutaneous givosiran 2.5 mg/kg (N=48) or placebo (N=46) for 6 months. In the open-label extension (OLE) period, 93 patients received givosiran 2.5 or 1.25 mg/kg for 6 months or more before transitioning to 2.5 mg/kg. Endpoints were exploratory unless otherwise noted. Results: During givosiran treatment, median annualized attack rate (AAR) was 0.4. Through Month 36, annualized days of hemin use remained low in the continuous givosiran group (median, 0.0 to 0.4) and decreased in the placebo crossover group (16.2 to 0.4). At end of OLE, in the continuous givosiran and placebo crossover groups, 86% and 92%, respectively, had 0 attacks. AAR was lower than historical AAR in 98% and 100%, respectively (post hoc analysis), and there were 0 days of hemin use in 88% and 90%, respectively. The 12-item Short Form Health Survey physical and mental component scores increased by 8.6 and 8.1, respectively (continuous givosiran) and 9.4 and 3.2, respectively (placebo crossover). EQ-5D health-related questionnaire scores increased by 18.9 (continuous givosiran) and 9.9 (placebo crossover). Lowering of urinary delta-aminolevulinic acid and porphobilinogen levels was sustained. Safety findings demonstrated a continued positive risk/benefit profile for givosiran

Development of a definition for Rapid Progression (RP) of renal function in HIV-positive persons: the D:A:D study

Background No consensus exists on how to define abnormally rapid deterioration in renal function (Rapid Progression, RP). We developed an operational definition of RP in HIV-positive persons with baseline estimated glomerular filtration rate (eGFR) >90 ml/min/1.73 m2 (using Cockcroft Gault) in the Data Collection on Adverse Events of Anti-HIV Drugs (D:A:D) study from 2004 to 2011. Methods Two definitions were evaluated; RP definition A: An average eGFR decline (slope) ≥5 ml/min/1.73 m2/year over four years of follow-up with ≥3 eGFR measurements/year, last eGFR <90 ml/min/1.73 m2 and an absolute decline ≥5 ml/min/1.73 m2/year in two consecutive years. RP definition B: An absolute annual decline ≥5 ml/min/1.73 m2/year in each year and last eGFR <90 ml/min/1.73 m2. Sensitivity analyses were performed considering two and three years' follow-up. The percentage with and without RP who went on to subsequently develop incident chronic kidney disease (CKD; 2 consecutive eGFRs <60 ml/min/1.73 m2 and 3 months apart) was calculated. Results 22,603 individuals had baseline eGFR ≥90 ml/min/1.73 m2. 108/3655 (3.0%) individuals with ≥4 years' follow-up and ≥3 measurements/year experienced RP under definition A; similar proportions were observed when considering follow-up periods of three (n=195/6375; 3.1%) and two years (n=355/10756; 3.3%). In contrast under RP definition B, greater proportions experienced RP when considering two years (n=476/10756; 4.4%) instead of three (n=48/6375; 0.8%) or four (n=15/3655; 0.4%) years' follow-up. For RP definition A, 13 (12%) individuals who experienced RP progressed to CKD, and only (21) 0.6% of those without RP progressed to CKD (sensitivity 38.2% and specificity 97.4%); whereas for RP definition B, fewer RP individuals progressed to CKD. Conclusions Our results suggest using three years' follow-up and at least two eGFR measurements per year is most appropriate for a RP definition, as it allows inclusion of a reasonable number of individuals and is associated with the known risk factors. The definition does not necessarily identify all those that progress to incident CKD, however, it can be used alongside other renal measurements to early identify and assess those at risk of developing CKD. Future analyses will use this definition to identify other risk factors for RP, including the role of antiretrovirals