Herd immunity under individual variation and reinfection

We study a SEIR model considered by Gomes et al. \cite{Gomes2020} and Aguas et al. \cite{Aguas2020} where different individuals are assumed to have different levels of susceptibility or exposure to infection. Under this heterogeneity assumption, epidemic growth is effectively suppressed when the percentage of population having acquired immunity surpasses a critical level - the herd immunity threshold - that is lower than in homogeneous populations. We find explicit formulas to calculate herd immunity thresholds and stable configuration, and explore extensions of the model

Modelling the epidemiology of residual Plasmodium vivax malaria in a heterogeneous host population : a case study in the Amazon Basin

The overall malaria burden in the Americas has decreased dramatically over the past two decades, but residual transmission pockets persist across the Amazon Basin, where Plasmodium vivax is the predominant infecting species. Current elimination efforts require a better quantitative understanding of malaria transmission dynamics for planning, monitoring, and evaluating interventions at the community level. This can be achieved with mathematical models that properly account for risk heterogeneity in communities approaching elimination, where few individuals disproportionately contribute to overall malaria prevalence, morbidity, and onwards transmission. Here we analyse demographic information combined with routinely collected malaria morbidity data from the town of Mâncio Lima, the main urban transmission hotspot of Brazil. We estimate the proportion of high-risk subjects in the host population by fitting compartmental susceptible-infected-susceptible (SIS) transmission models simultaneously to age-stratified vivax malaria incidence densities and the frequency distribution of P. vivax malaria attacks experienced by each individual over 12 months. Simulations with the best-fitting SIS model indicate that 20% of the hosts contribute 86% of the overall vivax malaria burden. Despite the low overall force of infection typically found in the Amazon, about one order of magnitude lower than that in rural Africa, high-risk individuals gradually develop clinical immunity following repeated infections and eventually constitute a substantial infectious reservoir comprised of asymptomatic parasite carriers that is overlooked by routine surveillance but likely fuels onwards malaria transmission. High-risk individuals therefore represent a priority target for more intensive and effective interventions that may not be readily delivered to the entire community

Topological Superconductor from the Quantum Hall Phase: Effective Field Theory Description

We derive low-energy effective field theories for the quantum anomalous Hall and topological superconducting phases. The quantum Hall phase is realized in terms of free fermions with nonrelativistic dispersion relation, possessing a global $U(1)$ symmetry. We couple this symmetry with a background gauge field and compute the effective action by integrating out the gapped fermions. In spite of the fact that the corresponding Dirac operator governing the dynamics of the original fermions is nonrelativistic, the leading contribution in the effective action is a usual Abelian $U(1)$ Chern-Simons term. The proximity to a conventional superconductor induces a pairing potential in the quantum Hall state, favoring the formation of Cooper pairs. When the pairing is strong enough, it drives the system to a topological superconducting phase, hosting Majorana fermions. Even though the continuum $U(1)$ symmetry is broken down to a $\mathbb{Z}_2$ one, we can forge fictitious $U(1)$ symmetries that enable us to derive the effective action for the topological superconducting phase, also given by a Chern-Simons theory. To eliminate spurious states coming from the artificial symmetry enlargement, we demand that the fields in the effective action are $O(2)$ instead of $U(1)$ gauge fields. In the $O(2)$ case we have to sum over the $\mathbb{Z}_2$ bundles in the partition function, which projects out the states that are not $\mathbb{Z}_2$ invariants. The corresponding edge theory is the $U(1)/\mathbb{Z}_2$ orbifold, which contains Majorana fermions in its operator content.Comment: 40 pages, 5 figures, journal versio

AVOCADO: A Virtual Observatory Census to Address Dwarfs Origins

Dwarf galaxies are by far the most abundant of all galaxy types, yet their properties are still poorly understood -especially due to the observational challenge that their intrinsic faintness represents. AVOCADO aims at establishing firm conclusions on their formation and evolution by constructing a homogeneous, multiwavelength dataset for a statistically significant sample of several thousand nearby dwarfs (-18 < Mi < -14). Using public data and Virtual Observatory tools, we have built GALEX+SDSS+2MASS spectral energy distributions that are fitted by a library of single stellar population models. Star formation rates, stellar masses, ages and metallicities are further complemented with structural parameters that can be used to classify them morphologically. This unique dataset, coupled with a detailed characterization of each dwar's environment, allows for a fully comprehensive investigation of their origins and to track the (potential) evolutionary paths between the different dwarf types.Comment: 4 pages, 1 figure. To appear in the proceedings of IAU Symposium 277, "Tracing the Ancestry of Galaxies on the Land of our Ancestors", Carignan, Freeman, and Combes, ed

The gorgonian coral Eunicella labiata hosts a distinct prokaryotic consortium amenable to cultivation

Microbial communities inhabiting gorgonian corals are believed to benefit their hosts through nutrient provision and chemical defence; yet much remains to be learned about their phylogenetic uniqueness and cultivability. Here, we determined the prokaryotic community structure and distinctiveness in the gorgonian Eunicella labiata by Illumina sequencing of 16S rRNA genes from gorgonian and seawater metagenomic DNA. Furthermore, we used a 'plate-wash' methodology to compare the phylogenetic diversity of the 'total' gorgonian bacteriome and its 'cultivatable' fraction. With 1016 operational taxonomic units (OTUs), prokaryotic richness was higher in seawater than in E. labiata where 603 OTUs were detected, 68 of which were host-specific. Oceanospirillales and Rhodobacterales predominated in the E. labiata communities. One Oceanospirillales OTU, classified as Endozoicomonas, was particularly dominant, and closest relatives comprised exclusively uncultured clones from other gorgonians. We cultivated a remarkable 62% of the bacterial symbionts inhabiting E. labiata: Ruegeria, Sphingorhabdus, Labrenzia, other unclassified Rhodobacteraceae, Vibrio and Shewanella ranked among the 10 most abundant genera in both the cultivation-independent and dependent samples. In conclusion, the E. labiata microbiome is diverse, distinct from seawater and enriched in (gorgonian)-specific bacterial phylotypes. In contrast to current understanding, many dominant E. labiata symbionts can, indeed, be cultivated.Portuguese Foundation for Science and Technology [EXPL/MAR-EST/1664/2013, SFRH/BPD/34282/2006]German Volkswagen (VW) foundation [Az. 81 040-2]info:eu-repo/semantics/publishedVersio

Effects of effortful swallowing on cardiac autonomic control in individuals with neurogenic dysphagia: A prospective observational analytical study

Considering that neurogenic oropharyngeal dysphagia is a prevalent condition with or without cardiac disease we should contemplate issues surrounding cardiovascular difficulties during rehabilitation. This study aims to evaluate the effects of effortful swallowing maneuver (ESM) on heart rate variability (HRV) in subjects with neurogenic oropharyngeal dysphagia. We studied 22 individuals [8 Stroke and 14 Parkinson Disease (PD) subjects aged between 41 and 75 years old] with neurogenic oropharyngeal dysphagia regardless of gender. HRV was assessed under two circumstances: spontaneous swallowing versus ESM. Surface electromyography of the suprahyoid muscles was undertaken to measure the swallowing muscle excitation, which then confirmed higher muscle activity during ESM. We attained no changes in HRV between the two swallowing events [HR: spontaneous swallowing 78.68 ± 13.91 bpm vs. ESM 102.57 ± 107.81 bpm, p = 0.201; RMSSD (root-mean square of differences between adjacent normal RR intervals in a time interval): spontaneous swallowing 16.99 ± 15.65 ms vs. ESM 44.74 ± 138.85 ms, p = 0.312; HF (high frequency): spontaneous swallowing 119.35 ± 273 ms2 vs. ESM 99.83 ± 194.58 ms2, p = 0.301; SD1 (standard deviation of the instantaneous variability of the beat-to-beat heart rate): spontaneous swallowing 12.02 ± 1.07 ms vs. ESM 31.66 ± 98.25 ms, p = 0.301]. The effortful swallowing maneuver did not cause clinically significant changes in autonomic control of HR in this group of subjects with oropharyngeal dysphagia

ENERGY COST DURING WALKING AND RUNNING A SAME DISTANCE IS ASSOCIATED WITH VERTICAL OSCILLATION ON GRAVITY CENTER.

The purpose of this study was to evaluate which factors are involved in energetic cost of running and walking a same distance (2,000 meters). Eight healthy men were submitted to walking (5.5km/h) and running (11Km/h) tests, when oxygen consumption, for energy expenditure of exercise, was monitored, and images of volunteers were recorded for vertical oscillation of gravity center. Both, total oxygen consumption and estimated energetic cost were significantly higher during the running test (

Clinical profile and treatment discontinuation in a tuberculosis control state programme in Brazil: preliminary results from SINAN database

Poster presented at the 45th ESCP Symposium on Clinical Pharmacy. 4-6 October 2016, Oslo, NorwayN/