Modelling cell movement and chemotaxis pseudopod based feedback

A computational framework is presented for the simulation of eukaryotic cell migration and chemotaxis. An empirical pattern formation model, based on a system of non-linear reaction-diffusion equations, is approximated on an evolving cell boundary using an Arbitrary Lagrangian Eulerian surface finite element method (ALE-SFEM). The solution state is used to drive a mechanical model of the protrusive and retractive forces exerted on the cell boundary. Movement of the cell is achieved using a level set method. Results are presented for cell migration with and without chemotaxis. The simulated behaviour is compared with experimental results of migrating Dictyostelium discoideum cells

Damming Grand Canyon: The 1923 USGS Colorado River Expedition

In 1923, America paid close attention, via special radio broadcasts, newspaper headlines, and cover stories in popular magazines, as a government party descended the Colorado to survey Grand Canyon. Fifty years after John Wesley Powell\u27s journey, the canyon still had an aura of mystery and extreme danger. At one point, the party was thought lost in a flood. Something important besides adventure was going on. Led by Claude Birdseye and including colorful characters such as early river-runner Emery Kolb, popular writer Lewis Freeman, and hydraulic engineer Eugene La Rue, the expedition not only made the first accurate survey of the river gorge but sought to decide the canyon\u27s fate. The primary goal was to determine the best places to dam the Grand. With Boulder Dam not yet built, the USGS, especially La Rue, contested with the Bureau of Reclamation over how best to develop the Colorado River. The survey party played a major role in what was known and thought about Grand Canyon. The authors weave a narrative from the party\u27s firsthand accounts and frame it with a thorough history of water politics and development and the Colorado River. The recommended dams were not built, but the survey both provided base data that stood the test of time and helped define Grand Canyon in the popular imagination.https://digitalcommons.usu.edu/usupress_pubs/1160/thumbnail.jp

Book Reviews

Reviews of the following books: A History of Maine Built Automobiles, 1834-1934 edited by Richard and Nancy Fraser; Crossing Lines: Histories of Jews and Gentiles in Three Communities by Judith Goldstein; Revolution Downeast: The War for American Independence by James R. Leamon; Night Boat to New England by Edwin L. Dunbaugh

The importance of incorporating functional habitats into conservation planning for highly mobile species in dynamic systems

The distribution of mobile species in dynamic systems can vary greatly over time and space. Estimating their population size and geographic range can be problematic and affect the accuracy of conservation assessments. Scarce data on mobile species and the resources they need can also limit the type of analytical approaches available to derive such estimates. We quantified change in availability and use of key ecological resources required for breeding for a critically endangered nomadic habitat specialist, the Swift Parrot (Lathamus discolor). We compared estimates of occupied habitat derived from dynamic presence-background (i.e., presence-only data) climatic models with estimates derived from dynamic occupancy models that included a direct measure of food availability. We then compared estimates that incorporate fine-resolution spatial data on the availability of key ecological resources (i.e., functional habitats) with more common approaches that focus on broader climatic suitability or vegetation cover (due to the absence of fine-resolution data). The occupancy models produced significantly (P < 0.001) smaller (up to an order of magnitude) and more spatially discrete estimates of the total occupied area than climate-based models. The spatial location and extent of the total area occupied with the occupancy models was highly variable between years (131 and 1498 km2 ). Estimates accounting for the area of functional habitats were significantly smaller (2-58% [SD 16]) than estimates based only on the total area occupied. An increase or decrease in the area of one functional habitat (foraging or nesting) did not necessarily correspond to an increase or decrease in the other. Thus, an increase in the extent of occupied area may not equate to improved habitat quality or function. We argue these patterns are typical for mobile resource specialists but often go unnoticed because of limited data over relevant spatial and temporal scales and lack of spatial data on the availability of key resources. Understanding changes in the relative availability of functional habitats is crucial to informing conservation planning and accurately assessing extinction risk for mobile resource specialists

Changes in frost frequency and desert vegetation assemblages in Grand Canyon, Arizona

The effect of decreasing frost frequency on desert vegetation was documented in Grand Canyon by replication of historical photographs. Although views by numerous photographers of Grand Canyon have been examined, 400 Robert Brewster Stanton and Franklin A. Nims views taken in the winter of 1889-1890 provide the best information on recent plant distribution. In Grand Canyon, where grazing is limited by the rugged topography, vegetation dynamics are controlled by climate and by demographic processes such as seed productivity, recruitment, longevity and mortality. The replicated photographs show distribution and abundance of several species were limited by severe frost before 1889. Two of these, brittlebush (Encelia farinosa) and barrel cactus (Ferocactus cylindraceus), have clearly expanded their ranges up-canyon and have increased their densities at sites where they were present in 1890. In 1890, brittlebush was present in warm microhabitats that provided refugia from frost damage. Views showing desert vegetation in 1923 indicate that Encelia expanded rapidly to near its current distribution between 1890 and 1923, whereas the expansion of Ferocactus occurred more slowly. The higher frequency of frost was probably related to an anomalous increase in winter storms between 1878 (and possibly 1862) and 1891 in the southwestern United States

Psychological Benefits 2 and 4 weeks After a Single Treatment with Near Infrared Light to the Forehead: A Pilot Study of 10 Patients with Major Depression and Anxiety

Background: Many studies have reported beneficial effects from the application of near-infrared (NIR) light photobiomodulation (PBM) to the body, and one group has reported beneficial effects applying it to the brain in stroke patients. We have reported that the measurement of a patient's left and right hemispheric emotional valence (HEV) may clarify data and guide lateralized treatments. We sought to test whether a NIR treatment could 1. improve the psychological status of patients, 2. show a relationship between immediate psychological improvements when HEV was taken into account, and 3. show an increase in frontal pole regional cerebral blood flow (rCBF), and 4. be applied without side effects. Methods: We gave 10 patients, (5 M/5 F) with major depression, including 9 with anxiety, 7 with a past history of substance abuse (6 with an opiate abuse and 1 with an alcohol abuse history), and 3 with post traumatic stress disorder, a baseline standard diagnostic interview, a Hamilton Depression Rating Scale (HAM-D), a Hamilton Anxiety Rating Scale (HAM-A), and a Positive and Negative Affect Scale (PANAS). We then gave four 4-minute treatments in a random order: NIR to left forehead at F3, to right forehead at F4, and placebo treatments (light off) at the same sites. Immediately following each treatment we repeated the PANAS, and at 2-weeks and at 4-weeks post treatment we repeated all 3 rating scales. During all treatments we recorded total hemoglobin (cHb), as a measure of rCBF with a commercial NIR spectroscopy device over the left and the right frontal poles of the brain. Results: At 2-weeks post treatment 6 of 10 patients had a remission (a score ≤ 10) on the HAM-D and 7 of 10 achieved this on the HAM-A. Patients experienced highly significant reductions in both HAM-D and HAM-A scores following treatment, with the greatest reductions occurring at 2 weeks. Mean rCBF across hemispheres increased from 0.011 units in the off condition to 0.043 units in the on condition, for a difference of 0.032 (95% CI: -0.016, 0.080) units, though this result did not reach statistical significance. Immediately after treatment the PANAS improved to a significantly greater extent with NIR "on" relative to NIR "off" when a hemisphere with more positive HEV was treated than when one with more negative HEV was treated. We observed no side effects. Conclusion: This small feasibility study suggests that NIR-PBM may have utility for the treatment of depression and other psychiatric disorders and that double blind randomized placebo-controlled trials are indicated. Trial registration: ClinicalTrials.gov Identifier: NCT0096145

Fast-growing growth hormone transgenic coho salmon (Oncorhynchus kisutch) show a lower incidence of vaterite deposition and malformations in sagittal otoliths

DGS is a Serra Húnter Tenure-Track lecturer, and this work has been partially funded by the Ministerio de Ciencia y Tecnología grant number RTI2018-100757-B-100. RHD acknowledges support from the Canadian Regulatory System for Biotechnology (grant number 61740).In fish otoliths, CaCO3 normally precipitates as aragonite, and more rarely as vaterite or calcite. A higher incidence of vaterite deposition in otoliths from aquaculture-reared fish has been reported and it is thought that high growth rates under farming conditions might promote its deposition. To test this hypothesis, otoliths from growth hormone (GH) transgenic coho salmon (TF) and non-transgenic (NT) fish of matching size were compared. Once morphometric parameters were normalized by animal length, we found that TF fish otoliths were smaller (-24%, -19%, -20% and -30%; P<0.001 for length, width, perimeter and area, respectively) and rounder (-12%, +13.5%, +15% and -15.5% in circularity, form factor, roundness and ellipticity; P<0.001) than otoliths from non-transgenic fish of matching size. Interestingly, transgenic fish had smaller eyes (-30% eye diameter) and showed a strong correlation between eye and otolith size. We also found that the percentage of otoliths showing vaterite deposition was significantly smaller in transgenic fish (21-28%) compared to non-transgenic (69%; P&lt;0.001). Likewise, the area affected with vaterite deposition within individual otoliths was reduced in transgenic fish (21-26%) compared to non-transgenic (42.5%; P<0.001). Our results suggest that high growth rates per se are not sufficient to cause vaterite deposition in all cases, and that GH overexpression might have a protective role against vaterite deposition, an hypothesis that needs further investigation.Publisher PDFPeer reviewe

Seismological imaging of ridge–arc interaction beneath the Eastern Lau Spreading Center from OBS ambient noise tomography

The Lau Basin displays large along-strike variations in ridge characters with the changing proximity of the adjacent subduction zone. The mechanism governing these changes is not well understood but one hypotheses relates them to interaction between the arc and back-arc magmatic systems. We present a 3D seismic velocity model of the shallow mantle beneath the Eastern Lau back-arc Spreading Center (ELSC) and the adjacent Tofua volcanic arc obtained from ambient noise tomography of ocean bottom seismograph data. Our seismic images reveal an asymmetric upper mantle low velocity zone (LVZ) beneath the ELSC. Two major trends are present as the ridge-to-arc distance increases: (1) the LVZ becomes increasingly offset from the ridge to the north, where crust is thinner and the ridge less magmatically active; (2) the LVZ becomes increasingly connected to a sub-arc low velocity zone to the south. The separation of the ridge and arc low velocity zones is spatially coincident with the abrupt transition in crustal composition and ridge morphology. Our results present the first mantle imaging confirmation of a direct connection between crustal properties and uppermost mantle processes at ELSC, and support the prediction that as ELSC migrates away from the arc, a changing mantle wedge flow pattern leads to the separation of the arc and ridge melting regions. Slab-derived water is cutoff from the ridge, resulting in abrupt changes in crustal lava composition and crustal porosity. The larger offset between mantle melt supply and the ridge along the northern ELSC may reduce melt extraction efficiency along the ridge, further decreasing the melt budget and leading to the observed flat and faulted ridge morphology, thinner crust and the lack of an axial melt lens