Conservation genetics of the annual hemiparasitic plant Melampyrum sylvaticum (Orobanchaceae) in the UK and Scandinavia

Melampyrum sylvaticum is an endangered annual hemiparasitic plant that is found in only 19 small and isolated populations in the United Kingdom (UK). To evaluate the genetic consequences of this patchy distribution we compared levels of diversity, inbreeding and differentiation from ten populations from the UK with eight relatively large populations from Sweden and Norway where the species is more continuously distributed. We demonstrate that in both the UK and Scandinavia, the species is highly inbreeding (global F IS = 0.899). Levels of population differentiation were high (F’ST = 0.892) and significantly higher amongst UK populations (F’ST = 0.949) than Scandinavian populations (F’ST = 0.762; P < 0.01). The isolated populations in the UK have, on average, lower genetic diversity (allelic richness, proportion of loci that are polymorphic, gene diversity) than Scandinavian populations, and this diversity difference is associated with the smaller census size and population area of UK populations. From a conservation perspective, the naturally inbreeding nature of the species may buffer the species against immediate effects of inbreeding depression, but the markedly lower levels of genetic diversity in UK populations may represent a genetic constraint to evolutionary change. In addition, the high levels of population differentiation suggest that gene flow among populations will not be effective at replenishing lost variation. We thus recommend supporting in situ conservation management with ex situ populations and human-mediated seed dispersal among selected populations in the UK

A low watering treatment alters biomass allocation and growth rate but not heteroblastic development in an Acacia species

Key message: TheAcaciaphyllode leaf form is hypothesised to be an adaptation to drought. However, in this experiment, the timing of phyllode development was not related to a low water treatment. Abstract: Acacia species have markedly different leaf forms known as compound leaves, transitional leaves, and phyllodes, also known as heteroblastic development. The different leaf types are thought to confer an advantage under varying moisture regimes, with phyllodes favoured in drier conditions. The hypothesis that phyllodes develop earlier under low water treatment was tested in this experiment. Three watering level treatments (100, 50, and 25\ua0%) were imposed on seedlings of A. implexa to assess developmental traits (leaf emergence, initial onset of transitional leaves, and phyllodes), biomass allocation patterns (root, stem, compound leaf area/mass, transitional leaf area/mass, and phyllode area/mass), and leaf anatomy traits (epidermis, palisade and spongy mesophyll, and stomatal density). Across watering treatments, there was no difference in the developmental onset of transitional leaves or phyllodes (produced at the 6th and 9th nodes, respectively). Under low watering treatment, there was a decrease in stem height per unit stem diameter, shorter internodes, and greater allocation of biomass to roots. There was no significant difference in leaf anatomy traits. Under the low watering treatment, there was less compound leaf area and mass due to leaf shedding. In this experiment, the low watering treatment did not favour phyllode development at the expense of compound leaf development. Rather, it was found that A. implexa responds to a low water treatment similarly to many other plant species: increased allocation to roots, increased stem area per unit stem height, decrease in leaf area through senescence of older leaves, and lower relative growth rates

The perceptual similarity of orb-spider prey lures and flower colours

Receiver biases offer opportunities for the evolution of deception in signalling systems. Many spiders use conspicuous body colouration to lure prey, yet the perceptual basis of such deception remains largely unknown. Here we use knowledge of visual perception in key pollinator groups (bees and flies) to test whether colour-based lures resemble floral signals. We addressed this question at two levels: first according to the spectral reflectance of Australian orb-web spiders and flowers across a broad continental range, and second in reference to polymorphic variation in the species Gasteracantha fornicata. Analysis at the community level supported the hypotheses for broad-scale convergence among spider and flower signals. Moreover, data for G. fornicata indicate that each lure morph presents a signal biased towards the colouration of sympatric flowers. This analysis identified fly- and/or bee-pollinated plants whose flowers are likely to be indistinguishable from each G. fornicata colour morph. Our findings support the hypothesis that deceptive colour-based lures exploit prey preferences for floral resources. Further, the evidence implies a greater role for specific model/mimic relationships over generalised resemblance to flower-like stimuli as a driver of lure colouration and diversity.20 page(s

Data from: Roses are red, violets are blue - so how much replication should you do? An assessment of variation in the colour of flowers and birds

After years of qualitative and subjective study, quantitative colour science is now enabling rapid measurement, analysis and comparison of colour traits. However, it has not been determined how many replicates one needs to accurately quantify a species' colours for studies aimed at broad cross-species trait comparison. We address this major methodological knowledge gap. We first quantified and assessed the variance in colour within and between species. Reflectance spectra of flowers from ten plant species and plumage of 20 bird species were measured using a spectrometer, and reflectance (i.e. brightness) and tetrahedral colour-space coordinates were calculated. analysis of variance (ANOVA) analyses indicate that there is far more variation in the colours of birds and flowers between species (> 77%) than within species. A Mean Absolute Deviation from the Mean test was applied to indicate the sampling replication required for each species. Tetrahedral coordinates were sampled precisely with only one individual per species. Greater replication was needed to sample reflectance with the desired precision, particularly for darker coloured species. Our findings will allow researchers to allocate their sampling effort in a way that maximises the precision of their colour data collection. The fact that only a few replicates per species are necessary will greatly facilitate broad cross-species comparisons of colour in the future

Roses are red, violets are blue - so how much replication should you do? an assessment of variation in the colour of flowers and birds

After years of qualitative and subjective study, quantitative colour science is now enabling rapid measurement, analysis and comparison of colour traits. However, it has not been determined how many replicates one needs to accurately quantify a species' colours for studies aimed at broad cross-species trait comparison. We address this major methodological knowledge gap. We first quantified and assessed the variance in colour within and between species. Reflectance spectra of flowers from ten plant species and plumage of 20 bird species were measured using a spectrometer, and reflectance (i.e. brightness) and tetrahedral colour-space coordinates were calculated. analysis of variance (ANOVA) analyses indicate that there is far more variation in the colours of birds and flowers between species (> 77%) than within species. A Mean Absolute Deviation from the Mean test was applied to indicate the sampling replication required for each species. Tetrahedral coordinates were sampled precisely with only one individual per species. Greater replication was needed to sample reflectance with the desired precision, particularly for darker coloured species. Our findings will allow researchers to allocate their sampling effort in a way that maximises the precision of their colour data collection. The fact that only a few replicates per species are necessary will greatly facilitate broad cross-species comparisons of colour in the future.13 page(s

A global growth-form database for 143,616 vascular plant species

For the majority of plant species in the world, we know little about their functional ecology, and not even one of the most basic traits—the species’ growth habit. To fill the gap in availability of compiled plant growth-form data, we have assembled what is, to our knowledge, the largest global database on growth-form as a plant trait. We have, with extensive error checking and data synthesis, assembled a growth-form database from 163 data sources for 143,616 vascular plant species from 445 different plant families. This is 38.6% of the currently accepted vascular plant diversity. For our database, we have chosen seven categories to cover the majority of the diversity in plant growth forms: aquatic plants, epiphytes, hemiepiphytes, climbing plants, parasitic plants, holo-mycoheterotrophs, and freestanding plants. These categories were used because we were able to reconcile the wealth of existing definitions and types of growth-form information available globally to them clearly and unequivocally, and because they are complementary with existing databases. Plants in the database were designated into a category if their adult growth form fit the criterion. We make available two databases: first, the complete data set, including species for which there is currently conflicting information, and second, a consensus data set, where all available information supports one categorization. Of the plant species for which we found information, 103,138 (72%) are freestanding, 21,110 (15%) are epiphytes, and 4,046 (3%) are parasites. Our growth-form data can be used to produce useful summary statistics by clade. For example, current data suggests that half of pteridophytes are epiphytic, that all hemiepiphytes are eudicots, and that there are no parasitic monocots, gymnosperms, or pteridophytes. Growth form is a crucial piece of fundamental plant-trait data with implications for each species’ ecology, evolution, and conservation, and thus this data set will be useful for a range of basic and applied questions across these areas of research. No copyright or proprietary restrictions are associated with the use of this data set, other than citation of the present Data Paper. A static version of this dataset is provided as Supporting Information, and a living and updating version of the dataset is available in a GitHub repository

Reproducible research in the study of biological coloration

The study of colour in nature has generated insights into fundamental evolutionary and ecological processes, and research into colour traits is a rapidly growing field (Kelber &amp; Osorio, 2010). The ongoing interest in biological coloration has in part been driven by the increased availability of key technologies, including spectrometry and photography, and concurrent advances in methods for analysing colour data, such as visual models (e.g. Endler &amp; Mielke, 2005; Kelber, Vorobyev, &amp; Osorio, 2003; Stevens, Parraga, Cuthill, Partridge, &amp; Troscianko, 2007). While these developments are positive for the field, the increasingly complex analyses being run on ever greater amounts of data heighten the need for comprehensive methods reporting and diligent data management (Alsheikh-Ali, Qureshi, Al-Mallah, &amp; Ioannidis, 2011; Nekrutenko &amp; Taylor, 2012)

A global growth‐form database for 143,616 vascular plant species

For the majority of plant species in the world, we know little about their functional ecology, and not even one of the most basic traits—the species’ growth habit. To fill the gap in availability of compiled plant growth-form data, we have assembled what is, to our knowledge, the largest global database on growth-form as a plant trait. We have, with extensive error checking and data synthesis, assembled a growth-form database from 163 data sources for 143,616 vascular plant species from 445 different plant families. This is 38.6% of the currently accepted vascular plant diversity. For our database, we have chosen seven categories to cover the majority of the diversity in plant growth forms: aquatic plants, epiphytes, hemiepiphytes, climbing plants, parasitic plants, holo-mycoheterotrophs, and freestanding plants. These categories were used because we were able to reconcile the wealth of existing definitions and types of growth-form information available globally to them clearly and unequivocally, and because they are complementary with existing databases. Plants in the database were designated into a category if their adult growth form fit the criterion. We make available two databases: first, the complete data set, including species for which there is currently conflicting information, and second, a consensus data set, where all available information supports one categorization. Of the plant species for which we found information, 103,138 (72%) are freestanding, 21,110 (15%) are epiphytes, and 4,046 (3%) are parasites. Our growth-form data can be used to produce useful summary statistics by clade. For example, current data suggests that half of pteridophytes are epiphytic, that all hemiepiphytes are eudicots, and that there are no parasitic monocots, gymnosperms, or pteridophytes. Growth form is a crucial piece of fundamental plant-trait data with implications for each species’ ecology, evolution, and conservation, and thus this data set will be useful for a range of basic and applied questions across these areas of research. No copyright or proprietary restrictions are associated with the use of this data set, other than citation of the present Data Paper. A static version of this dataset is provided as Supporting Information, and a living and updating version of the dataset is available in a GitHub repository

Reproducible research in the study of biological coloration

The study of colour in nature has generated insights into fundamental evolutionary and ecological processes, and research into colour traits is a rapidly growing field (Kelber & Osorio, 2010). The ongoing interest in biological coloration has in part been driven by the increased availability of key technologies, including spectrometry and photography, and concurrent advances in methods for analysing colour data, such as visual models (e.g. Endler and Mielke, 2005, Kelber et al., 2003 and Stevens et al., 2007). While these developments are positive for the field, the increasingly complex analyses being run on ever greater amounts of data heighten the need for comprehensive methods reporting and diligent data management (Alsheikh-Ali et al., 2011 and Nekrutenko and Taylor, 2012). Our aim was to explore the state of reproducibility in the study of biological coloration, and to suggest simple ways in which it may be improved. We first outline common methods for studying biological coloration and present guidelines for comprehensive methods reporting. We then explore how well some of these important criteria have been reported in the literature. We also quantify the availability of publicly archived data and code and suggest some useful tools for increasing the reproducibility of colour trait research more broadly

Birds, butterflies and flowers in the tropics are not more colourful than those at higher latitudes

Aim: The idea that species are generally more colourful at tropical latitudes has held great appeal among biologists since the days of exploration by early naturalists. However, advances in colour quantification and analysis only now allow an objective test of this idea. We provide the first quantitative analysis of the latitudinal gradient in colour on a broad scale using data from both animals and plants, encompassing both human-visible and ultraviolet colours. Location: Australia. Methods: We collected spectral reflectance data from 570 species or subspecies of birds, adult forms of 424 species or subspecies of butterflies and the flowers of 339 species of plants, from latitudes ranging from tropical forests and savannas at 9.25°S, to temperate forests and heathlands at 43.75°S. Colour patch saturation, maximum contrast between patches, colour diversity and hue disparity between patches were calculated for all species. Latitudinal gradients in colour were analysed using both regression analyses and comparisons of categorically temperate and tropical regions. We also provide phylogenetically independent contrast analyses. Results: The analyses which compared the colour traits of communities and the phylogenetically independent contrasts both show that species in the tropics are not more colourful than those at higher latitudes. Rather, the cross-species analyses indicate that species further away from the equator possess a greater diversity of colours, and their colours are more contrasting and more saturated than those seen in tropical species. These results remain consistent regardless of whether the mean or the maximum of coloration indices are considered. Main conclusions: We demonstrate that birds, butterflies and flowers display similar gradients of colourfulness across latitudes, indicating strong ecological and evolutionary cohesion. However, our data do not support the idea that tropical latitudes contain the most colourful species or house the more colourful biological communities.9 page(s