An association rule mining method for estimating the impact of project management policies on software quality, development time and effort

Accurate and early estimations are essential for effective decision making in software project management. Nowadays, classical estimation models are being replaced by data mining models due to their application simplicity and the rapid production of profitable results. In this work, a method for mining association rules that relate project attributes is proposed. It deals with the problem of discretizing continuous data in order to generate a manageable number of high confident association rules. The method was validated by applying it to data from a Software Project Simulator. The association model obtained allows us to estimate the influence of certain management policy factors on various software project attributes simultaneously

Portuguese wild grapevine genome re-sequencing (Vitis vinifera sylvestris)

Supplementary information is available for this paper at https://doi.org/10.1038/s41598-020-76012-6.The first genome of Vitis vinifera vinifera (PN40024), published in 2007, boosted grapevine related studies. While this reference genome is a suitable tool for the overall studies in the field, it lacks the ability to unveil changes accumulated during V. v. vinifera domestication. The subspecies V. v. sylvestris preserves wild characteristics, making it a good material to provide insights into V. v. vinifera domestication. The difference in the reproductive strategy between both subspecies is one of the characteristics that set them apart. While V. v. vinifera flowers are hermaphrodite, V. v. sylvestris is mostly dioecious. In this paper, we compare the re-sequencing of the genomes from a male and a female individual of the wild sylvestris, against the reference vinifera genome (PN40024). Variant analysis reveals a low number but with high impact modifications in coding regions, essentially non-synonymous single nucleotide polymorphisms and frame shifts caused by insertions and deletions. The sex-locus was manually inspected, and the results obtained are in line with the most recent works related with wild grapevine sex. In this paper we also describe for the first time RNA editing in transcripts of 14 genes in the sex-determining region, including VviYABBY and VviPLATZ.Tis work was supported by Fundação para a Ciência e Tecnologia (FCT) through the Research Center LEAF (UIDP/04129/2020). Authors JLCoito, MJNRamos, MRocheta, were funded by FCT fellowships SFRH/ BD/85824/2012 and CEECIND2017, SFRH/BD/110274/2015, SFRH/BPD/64905/2009, respectively

RNA editing in inflorescences of wild grapevine unveils association to sex and development

RNA editing challenges the central dogma of molecular biology, by modifying the genetic information at the transcription level. Recent reports, suggesting increased levels of RNA editing in plants, raised questions on the nature and dynamics of such events during development. We here report the occurrence of distinct RNA editing patterns in wild Vitis flowers during development, with twelve possible RNA editing modifications observed for the first time in plants. RNA editing events are gender and developmental stage specific, identical in subsequent years of this perennial species and with distinct nucleotide frequencies neighboring editing sites on the 5' and 3' flanks. The transcriptome dynamics unveils a new regulatory layer responsible for gender plasticity enhancement or underling dioecy evolution in Vitis

A deep look at the nuclear region of UGC 5101 through high angular resolution mid-IR data with GTC/CanariCam

et al.We present an analysis of the nuclear infrared (IR, 1.6-18 μm) emission of the ultraluminous IR galaxy UGC5101 to derive the properties of its active galactic nucleus (AGN) and its obscuring material. We use new mid-IR high angular resolution (0.3-0.5 arcsec) imaging using the Si-2 filter (λ = 8.7 μm) and 7.5-13 μm spectroscopy taken with CanariCam (CC) on the 10.4 m Gran Telescopio CANARIAS. We also use archival Hubble Space Telescope/NICMOS and Subaru/COMICS imaging and Spitzer/IRS spectroscopy. We estimate the near- and mid-IR unresolved nuclear emission by modelling the imaging data with GALFIT. We decompose the Spitzer/IRS and CC spectra using a power-law component, which represents the emission due to dust heated by the AGN, and a starburst component, both affected by foreground extinction. We model the resulting unresolved near- and mid-IR, and the starburst subtracted CC spectrum with the CLUMPY torus models of Nenkova et al. The derived geometrical properties of the torus, including the large covering factor and the high foreground extinction needed to reproduce the deep 9.7 μm silicate feature, are consistent with the lack of strong AGN signatures in the optical.We derive an AGN bolometric luminosity L ~ 1.9 × 10 erg s that is in good agreement with other estimates in the literature.This work has been partly supported by Mexican CONACyT under research grant CB-2011-01-167291. MMP acknowledges support by the CONACyT PhD fellowship programme. AA-H and AH-C acknowledge financial support from the Spanish Plan Nacional de Astronomía y Astrofísica under grant AYA2012-31447, which is partly funded by the FEDER programme, and the Universidad de Cantabria through the Augusto G. Linares programme. CRA is supported by a Marie Curie Intra European Fellowship within the 7th European Community Framework Programme (PIEF-GA-2012-327934). IG-B ackowledges financial support from the Instituto de Astrofísica de Canarias through Fundacion La Caixa and from the Spanish Ministry of Science and Innovation (MICINN) through project PN AYA2013-47742-c4-2-P (Estallidos).Peer Reviewe

Uncovering the deeply embedded active galactic nucleus activity in the nuclear regions of the interacting galaxy Arp 299

Alonso-Herrero, A. et al.We present mid-infrared (MIR) 8-13 μm spectroscopy of the nuclear regions of the interacting galaxy Arp 299 (IC 694+NGC 3690) obtained with CanariCam (CC) on the 10.4 m Gran Telescopio Canarias (GTC). The high angular resolution (∼0.″3-0.″6) of the data allows us to probe nuclear physical scales between 60 and 120 pc, which is a factor of 10 improvement over previous MIR spectroscopic observations of this system. The GTC/CC spectroscopy displays evidence of deeply embedded active galactic nucleus (AGN) activity in both nuclei. The GTC/CC nuclear spectrum of NGC 3690/Arp 299-B1 can be explained as emission from AGN-heated dust in a clumpy torus with both a high covering factor and high extinction along the line of sight. The estimated bolometric luminosity of the AGN in NGC 3690 is 3.2 ± 0.6 × 1044 erg s-1. The nuclear GTC/CC spectrum of IC 694/Arp 299-A shows 11.3 μm polycyclic aromatic hydrocarbon emission stemming from a deeply embedded (AV ∼ 24 mag) region of less than 120 pc in size. There is also a continuum-emitting dust component. If associated with the putative AGN in IC 694, we estimate that it would be approximately five times less luminous than the AGN in NGC 3690. The presence of dual AGN activity makes Arp 299 a good example to study such phenomena in the early coalescence phase of interacting galaxies. © 2013. The American Astronomical Society. All rights reserved.The following Spanish Plan Nacional de Astronomía y Astrofísica grants are acknowledged: AYA2009-05705-E (A.A.H., P.E., C.R.A., and M.P.S.), AYA2010-21887-C04 (C.R.A. and J.M.R.E.), AYA2010-18029 (A.A.R.), AYA2010-21161-C02-01 (L.C.), and AYA2012-39168-C03-01 (J.M.R.E. and O.G.M.). A.A.R. also acknowledges financial support through the Ramón y Cajal fellowships and Consolider-Ingenio 2010 CSD2009-00038. C.P. and C.M.T. acknowledge support from NSF grants 0904421 and AST-903672, respectively.Peer Reviewe

Early-onset Alzheimer's disease shows a distinct neuropsychological profile and more aggressive trajectories of cognitive decline than late-onset

Early- and late-onset Alzheimer's disease (EOAD and LOAD) share the same neuropathological traits but show distinct cognitive features. We aimed to explore baseline and longitudinal outcomes of global and domain-specific cognitive function in a well characterized cohort of patients with a biomarker-based diagnosis.In this retrospective cohort study, 195 participants were included and classified according to their age, clinical status, and CSF AD biomarker profile: 89 EOAD, 37 LOAD, 46 young healthy controls (age???65?years), and 23 old healthy controls (>65?years). All subjects underwent clinical and neuropsychological assessment, neuroimaging, APOE genotyping and lumbar puncture.We found distinct neuropsychological profiles between EOAD and LOAD at the time of diagnosis. Both groups showed similar performances on memory and language domains, but the EOAD patients displayed worsened deficits in visual perception, praxis, and executive tasks (p?<?0.05). Longitudinally, cognitive decline in EOAD was more pronounced than LOAD in the global outcomes at the expense of these non-amnestic domains. We found that years of education significantly influenced the decline in most of the neuropsychological tests. Besides, the APOE ?4 status showed a significant effect on the decline of memory-related tasks within the EOAD cohort (p?<?0.05).Age of onset is a main factor shaping the cognitive trajectories in AD patients, with younger age driving to a steeper decline of the non-memory domains. Years of education are related to a transversal decline in all cognitive domains and APOE ?4 status to a specific decline in memory performance in EOAD.© 2022 The Authors. Annals of Clinical and Translational Neurology published by Wiley Periodicals LLC on behalf of American Neurological Association

A Standard Protocol for Liana Censuses 1

A recent increase in published studies of lianas has been paralleled by a proliferation of protocols for censusing lianas. This article seeks to increase uniformity in liana inventories by providing specific recommendations for the determination of which taxa to include, the location of diameter measurement points on individual stems, the setting of minimum stem diameter cutoffs, the treatment of multiple-stemmed and rooted clonal groups, and the measurement of noncylindrical stems. Use of more uniform liana censusing protocols may facilitate comparison of independently collected data sets and further our understanding of global patterns in liana abundance, diversity, biomass, and dynamics.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/75009/1/j.1744-7429.2006.00134.x.pd

Is the tiger shark (Galeocerdo cuvier) a coastal species? Expanding its distribution range in the Atlantic Ocean using at-sea observer data

captura asociada a la pesquería de palangre de superficie dirigida a pez espadaThe occurrence of tiger shark (Galeocerdo cuvier) in the Atlantic Ocean was assessed using at-sea observer data from multiple pelagic longline fisheries (Japan, Portugal, Spain, United States and Uruguay). Geographic positions of 2,764 tiger sharks, recorded between 1993 and 2013 and covering a wide area of the Atlantic were compared with the currently accepted distribution ranges of the species. Most of our records fell outside the accepted distribution ranges in both the Southern and Northern hemispheres. These results strongly suggest that the distribution range of the tiger shark is considerably wider than previously described, particularly over the open oceanEn prensa1,834

Nuclear 11.3μm PAH emission in local active galactic nuclei

A. Alonso-Herrero et al.We present Gran Telescopio CANARIAS CanariCam 8.7 μm imaging and 7.5-13 μm spectroscopy of six local systems known to host an active galactic nucleus (AGN) and have nuclear star formation. Our main goal is to investigate whether the molecules responsible for the 11.3 μm polycyclic aromatic hydrocarbon (PAH) feature are destroyed in the close vicinity of an AGN. We detect 11.3 μm PAH feature emission in the nuclear regions of the galaxies as well as extended PAH emission over a few hundred parsecs. The equivalent width (EW) of the feature shows a minimum at the nucleus but increases with increasing radial distances, reaching typical star-forming values a few hundred parsecs away from the nucleus. The reduced nuclear EWs are interpreted as due to increased dilution from the AGN continuum rather than destruction of the PAH molecules. We conclude that at least those molecules responsible for the 11.3 μm PAH feature survive in the nuclear environments as close as 10 pc from the AGN and for Seyfert-like AGN luminosities. We propose that material in the dusty tori, nuclear gas discs, and/or host galaxies of AGN is likely to provide the column densities necessary to protect the PAH molecules from the AGN radiation field. © 2014 The Authors Published by Oxford University Press on behalf of the Royal Astronomical Society.AA-H and AH-C are partly funded by the Universidad de Cantabria through the Augusto G. Linares programme. AA-H and AH-C acknowledge financial support from the Spanish Plan Nacional grant AYA2012-31447, AA-H and PE from grant AYA2009-05705-E, CRA from grant AYA2010-21887-C04.4 (Estallidos), PE from grant AYA2012-31277, and LC from grant AYA2012-32295. CRA acknowledges financial support from the Marie Curie Intra European Fellowship within the 7th European Community Framework Programme (PIEF-GA-2012-327934) and SFH from the Marie Curie International Incoming Fellowship within the 7th European Community Framework Programme (PIIFGA-2013-623804).Peer Reviewe

Delta-24-RGD combined with radiotherapy exerts a potent antitumor effect in diffuse intrinsic pontine glioma and pediatric high grade glioma models

Pediatric high grade gliomas (pHGG), including diffuse intrinsic pontine gliomas (DIPGs), are aggressive tumors with a dismal outcome. Radiotherapy (RT) is part of the standard of care of these tumors; however, radiotherapy only leads to a transient clinical improvement. Delta-24-RGD is a genetically engineered tumor-selective adenovirus that has shown safety and clinical efficacy in adults with recurrent gliomas. In this work, we evaluated the feasibility, safety and therapeutic efficacy of Delta-24-RGD in combination with radiotherapy in pHGGs and DIPGs models. Our results showed that the combination of Delta-24-RGD with radiotherapy was feasible and resulted in a synergistic anti-glioma effect in vitro and in vivo in pHGG and DIPG models. Interestingly, Delta-24-RGD treatment led to the downregulation of relevant DNA damage repair proteins, further sensitizing tumors cells to the effect of radiotherapy. Additionally, Delta-24-RGD/radiotherapy treatment significantly increased the trafficking of immune cells (CD3, CD4+ and CD8+) to the tumor niche compared with single treatments. In summary, administration of the Delta-24-RGD/radiotherapy combination to pHGG and DIPG models is safe and significantly increases the overall survival of mice bearing these tumors. Our data offer a rationale for the combination Delta-24-RGD/radiotherapy as a therapeutic option for children with these tumors. SIGNIFICANCE: Delta-24-RGD/radiotherapy administration is safe and significantly increases the survival of treated mice. These positive data underscore the urge to translate this approach to the clinical treatment of children with pHGG and DIPGs