Analyse de classes de formes pour la transcription de textes imprimés anciens

International audienceCe travail se situe dans le contexte de la numérisation et de l'indexation de documents imprimés anciens. Il décrit un logiciel intitulé Retro, permettant de transcrire semi automatiquement les zones de texte préalablement localisées et extraites à l'aide d'un autre logiciel nommé Agora. Agora réalise simultanément l'analyse de structure des pages et une extraction de toutes les composantes connexes présentes dans chaque page. Une classification non-supervisée de ces composantes connexes est effectuée et conduit à la création de classes regroupant des composantes semblables. Nous proposons dans cet article une étude, puis une exploitation des classes issues d'Agora pour obtenir une transcription du texte (OCR). Nous présentons une analyse statistique et qualitative des classes produites, avant de proposer une méthode de fusion des classes basées sur l'étude de leur relation de voisinage qui nous permet d'étiqueter rapidement 60% des caractères d'un ouvrage sans utiliser de méthode couteuse en temps de calcul

A robust braille recognition system

Braille is the most effective means of written communication between visually-impaired and sighted people. This paper describes a new system that recognizes Braille characters in scanned Braille document pages. Unlike most other approaches, an inexpensive flatbed scanner is used and the system requires minimal interaction with the user. A unique feature of this system is the use of context at different levels (from the pre-processing of the image through to the post-processing of the recognition results) to enhance robustness and, consequently, recognition results. Braille dots composing characters are identified on both single and double-sided documents of average quality with over 99% accuracy, while Braille characters are also correctly recognised in over 99% of documents of average quality (in both single and double-sided documents)

Characterisation of mixed virus infections in Ribes species in Switzerland

Various virus disease-like symptoms are frequently observed in Ribes sp. in Switzerland but the aetiology remains poorly documented, although a number of viruses infecting Ribes sp. were described elsewhere. Therefore, symptomatic and apparently healthy plants from diverse origins were analysed by electron microscopy (EM), immunoprecipitation electron microscopy (IPEM), Western blot and (RT-)PCR. By EM, at least four different particle types, often in combination, were observed. (1) Bacilliform particles were typical for the Badnavirus genus with dimensions of 145 x 28 nm. This virus was identified by PCR as the Gooseberry vein banding associated virus (GVBaV). (2) Filamentous particles were mainly observed on black currants with downward rolling of leaves with interveinal reddening during summer and fall. We tentatively named this unknown virus Blackcurrant leafroll-associated virus 1 (BCLRaV-1). In phylogenetic analysis of HSP70h nucleotide sequences, BCLRaV-1 felt in the Closterovirus genus. In Western blot analysis, one dominant protein with an estimated molecular weight of about 28 kDa was detectable. The virus was shown to be different from the Raspberry mottle closterovirus (RMoV) by IPEM and RT-PCR. (3) RTPCR and sequencing of products also clearly demonstrated the presence in our Ribes samples of Rubus chlorotic mottle virus (RuCMV), a Sobemovirus recently described in Scotland. This finding correlates with the presence of the 30 nm diameter particles observed by EM. (4) A further structure with isometrical particles of 60 nm could not yet be attributed to a particular genus. Altogether, our data suggest the presence of multiple virus infections i

Interactive segmentation and analysis of historical printed documents

In this paper, we first precise the main error sources from classical methods of structural page layout analysis based on a study of the specificity of old printed books. We show that each type of methods (bottom-up and top-down) provides different kinds of information that should not be ignored to obtain both a generic method and good segmentation results. Then, we propose to use a hybrid segmentation algorithm. We build two maps : a shape map that focuses on connected components and a background map that provides information on white areas corresponding to block separation in the page. Then, using this first segmentation, a classification of the extracted blocks can be achieved according to scenarios built by the user. These scenarios are defined very simply during an interactive stage allowing the users to produce processing sequences adapted to the different kinds of images they can meet and to their needs. The method gives very good results while the setting of parameters is easy and not sensitive to low variations.Après avoir caractérisé les spécificités de mise en page dans les ouvrages imprimés anciens, nous montrons par une campagne d’expérimentations que les méthodes ascendantes et descendantes d’extraction de la structure physique apportent des informations différentes qu’il ne faut pas ignorer lorsque l’on désire segmenter de manière optimale des documents anciens. Les tests réalisés mettent également en évidence les sources d’erreurs des méthodes traditionnelles. Partant de ces constatations, notre proposition consiste à utiliser un algorithme de segmentation hybride basé sur la construction de deux représentations de l’image : une carte des formes qui se focalise sur les composantes connexes présentes dans l’image et une carte du fond qui fournit de l’information sur les espaces blancs séparant les blocs constituant la page. Ensuite, sur la base de la segmentation obtenue à l’aide de cette méthode, une classification des blocs extraits peut être réalisée selon des scénarios que l’utilisateur met en place en fonction de ses besoins. Ces scénarios sont définis simplement grâce à une phase d’interaction entre l’utilisateur et le système et permettent de concevoir des chaînes de traitements adaptées aux différents types d’images que l’on peut rencontrer

Visualising apoptosis in live zebrafish using fluorescence lifetime imaging with optical projection tomography to map FRET biosensor activity in space and time

Fluorescence lifetime imaging (FLIM) combined with optical projection tomography (OPT) has the potential to map Förster resonant energy transfer (FRET) readouts in space and time in intact transparent or near transparent live organisms such as zebrafish larvae, thereby providing a means to visualise cell signalling processes in their physiological context. Here the first application of FLIM OPT to read out biological function in live transgenic zebrafish larvae using a genetically expressed FRET biosensor is reported. Apoptosis, or programmed cell death, is mapped in 3-D by imaging the activity of a FRET biosensor that is cleaved by Caspase 3, which is a key effector of apoptosis. Although apoptosis is a naturally occurring process during development, it can also be triggered in a variety of ways, including through gamma irradiation. FLIM OPT is shown here to enable apoptosis to be monitored over time, in live zebrafish larvae via changes in Caspase 3 activation following gamma irradiation at 24 hours post fertilisation. Significant apoptosis was observed at 3.5 hours post irradiation, predominantly in the head region

The sarcopenia and physical frailty in older people : multi-component treatment strategies (SPRINTT) project: description and feasibility of a nutrition intervention in community-dwelling older Europeans

Background The "Sarcopenia and Physical Frailty in Older People: Multicomponent Treatment Strategies" (SPRINTT) project sponsored a multi-center randomized controlled trial (RCT) with the objective to determine the effect of physical activity and nutrition intervention for prevention of mobility disability in community-dwelling frail older Europeans. We describe here the design and feasibility of the SPRINTT nutrition intervention, including techniques used by nutrition interventionists to identify those at risk of malnutrition and to carry out the nutrition intervention. Methods SPRINTT RCT recruited older adults (>= 70 years) from 11 European countries. Eligible participants (n = 1517) had functional limitations measured with Short Physical Performance Battery (SPPB score 3-9) and low muscle mass as determined by DXA scans, but were able to walk 400 m without assistance within 15 min. Participants were followed up for up to 3 years. The nutrition intervention was carried out mainly by individual nutrition counseling. Nutrition goals included achieving a daily protein intake of 1.0-1.2 g/kg body weight, energy intake of 25-30 kcal/kg of body weight/day, and serum vitamin D concentration >= 75 mmol/L. Survey on the method strategies and feasibility of the nutrition intervention was sent to all nutrition interventionists of the 16 SPRINTT study sites. Results Nutrition interventionists from all study sites responded to the survey. All responders found that the SPRINTT nutrition intervention was feasible for the target population, and it was well received by the majority. The identification of participants at nutritional risk was accomplished by combining information from interviews, questionnaires, clinical and laboratory data. Although the nutrition intervention was mainly carried out using individual nutritional counselling, other assisting methods were used as appropriate. Conclusion The SPRINTT nutrition intervention was feasible and able to adapt flexibly to varying needs of this heterogeneous population. The procedures adopted to identify older adults at risk of malnutrition and to design the appropriate intervention may serve as a model to deliver nutrition intervention for community-dwelling older people with mobility limitations. Aim To describe the methods and feasibility of the nutritional intervention carried out within the SPRINTT Randomized cotrolled trial. We also illustrate how nutrition interventionists identified participants at risk of malnutrition and the lessons learnt from the nutrition intervention. Findings SPRINTT nutrition intervention was well-received by the majority of the participants. It was mainly carried out using tailored nutrition counselling, but also other means of delivering the intervention were successfully used. Compared with a standard nutrition prescription, an individualized protocol to diagnose malnutrition and follow-up by tailored nutrition counselling helped achieve nutritional targets more effectively in spite of diversity of population in nutritional habits and in some cases reluctance to accept changes. Message The SPRINTT nutrition intervention was feasible and allowed flexibility to the varying needs and cultural differences of this heterogeneous population of frail, older Europeans. It may serve as a model to educate and improve nutrition among community-dwelling older people at risk of mobility limitations.Peer reviewe

Accelerated optical projection tomography applied to in vivo imaging of zebrafish

Optical projection tomography (OPT) provides a non-invasive 3-D imaging modality that can be applied to longitudinal studies of live disease models, including in zebrafish. Current limitations include the requirement of a minimum number of angular projections for reconstruction of reasonable OPT images using filtered back projection (FBP), which is typically several hundred, leading to acquisition times of several minutes. It is highly desirable to decrease the number of required angular projections to decrease both the total acquisition time and the light dose to the sample. This is particularly important to enable longitudinal studies, which involve measurements of the same fish at different time points. In this work, we demonstrate that the use of an iterative algorithm to reconstruct sparsely sampled OPT data sets can provide useful 3-D images with 50 or fewer projections, thereby significantly decreasing the minimum acquisition time and light dose while maintaining image quality. A transgenic zebrafish embryo with fluorescent labelling of the vasculature was imaged to acquire densely sampled (800 projections) and under-sampled data sets of transmitted and fluorescence projection images. The under-sampled OPT data sets were reconstructed using an iterative total variation-based image reconstruction algorithm and compared against FBP reconstructions of the densely sampled data sets. To illustrate the potential for quantitative analysis following rapid OPT data acquisition, a Hessian-based method was applied to automatically segment the reconstructed images to select the vasculature network. Results showed that 3-D images of the zebrafish embryo and its vasculature of sufficient visual quality for quantitative analysis can be reconstructed using the iterative algorithm from only 32 projections-achieving up to 28 times improvement in imaging speed and leading to total acquisition times of a few seconds

A Technological Framework for the Authoring and Presentation of T-learning Courses

Broadcasting interactive learning applications through the digital TV promises to open new pedagogical perspectives, also in a life-long learning perspective, given the wide penetration of the medium. This article proposes an open flexible and composable framework for the development, the delivery and the presentation of t-learning courses in interactive digital TV (iDTV). The framework is divided into two main parts: the production side, where the course is prepared and the client side, where it is presented on iDTV, and where the user can perform the educational interaction. The course production is supported by an ad-hoc designed authoring tool, while the runtime user interaction on iDTV is managed by a multimedia course player providing personalization services and a library of educational and entertainment elements and services. Seven experimental t-learning courses were created by pedagogical experts in several knowledge domains and served as an important test and evaluation bench for the framework, in view of the upcoming extensive end-user testing

A New Class of Small Molecule Inhibitor of BMP Signaling

Growth factor signaling pathways are tightly regulated by phosphorylation and include many important kinase targets of interest for drug discovery. Small molecule inhibitors of the bone morphogenetic protein (BMP) receptor kinase ALK2 (ACVR1) are needed urgently to treat the progressively debilitating musculoskeletal disease fibrodysplasia ossificans progressiva (FOP). Dorsomorphin analogues, first identified in zebrafish, remain the only BMP inhibitor chemotype reported to date. By screening an assay panel of 250 recombinant human kinases we identified a highly selective 2-aminopyridine-based inhibitor K02288 with in vitro activity against ALK2 at low nanomolar concentrations similar to the current lead compound LDN-193189. K02288 specifically inhibited the BMP-induced Smad pathway without affecting TGF-β signaling and induced dorsalization of zebrafish embryos. Comparison of the crystal structures of ALK2 with K02288 and LDN-193189 revealed additional contacts in the K02288 complex affording improved shape complementarity and identified the exposed phenol group for further optimization of pharmacokinetics. The discovery of a new chemical series provides an independent pharmacological tool to investigate BMP signaling and offers multiple opportunities for pre-clinical development