Genome characterization and population genetic structure of the zoonotic pathogen, streptococcus canis

Background - Streptococcus canis is an important opportunistic pathogen of dogs and cats that can also infect a wide range of additional mammals including cows where it can cause mastitis. It is also an emerging human pathogen. Results - Here we provide characterization of the first genome sequence for this species, strain FSL S3-227 (milk isolate from a cow with an intra-mammary infection). A diverse array of putative virulence factors was encoded by the S. canis FSL S3-227 genome. Approximately 75% of these gene sequences were homologous to known Streptococcal virulence factors involved in invasion, evasion, and colonization. Present in the genome are multiple potentially mobile genetic elements (MGEs) [plasmid, phage, integrative conjugative element (ICE)] and comparison to other species provided convincing evidence for lateral gene transfer (LGT) between S. canis and two additional bovine mastitis causing pathogens (Streptococcus agalactiae, and Streptococcus dysgalactiae subsp. dysgalactiae), with this transfer possibly contributing to host adaptation. Population structure among isolates obtained from Europe and USA [bovine = 56, canine = 26, and feline = 1] was explored. Ribotyping of all isolates and multi locus sequence typing (MLST) of a subset of the isolates (n = 45) detected significant differentiation between bovine and canine isolates (Fisher exact test: P = 0.0000 [ribotypes], P = 0.0030 [sequence types]), suggesting possible host adaptation of some genotypes. Concurrently, the ancestral clonal complex (54% of isolates) occurred in many tissue types, all hosts, and all geographic locations suggesting the possibility of a wide and diverse niche. Conclusion - This study provides evidence highlighting the importance of LGT in the evolution of the bacteria S. canis, specifically, its possible role in host adaptation and acquisition of virulence factors. Furthermore, recent LGT detected between S. canis and human bacteria (Streptococcus urinalis) is cause for concern, as it highlights the possibility for continued acquisition of human virulence factors for this emerging zoonotic pathogen

A capacitance spectroscopy-based platform for realizing gate-defined electronic lattices

Electrostatic confinement in semiconductors provides a flexible platform for the emulation of interacting electrons in a two-dimensional lattice, including in the presence of gauge fields. This combination offers the potential to realize a wide host of quantum phases. Here we present a measurement and fabrication scheme that builds on capacitance spectroscopy and allows for the independent control of density and periodic potential strength imposed on a two-dimensional electron gas. We characterize disorder levels and (in)homogeneity and develop and optimize different gating strategies at length scales where interactions are expected to be strong. A continuation of these ideas might see to fruition the emulation of interaction-driven Mott transitions or Hofstadter butterfly physics

Flavor Ratios of Astrophysical Neutrinos: Implications for Precision Measurements

We discuss flavor-mixing probabilities and flavor ratios of high energy astrophysical neutrinos. In the first part of this paper, we expand the neutrino flavor-fluxes in terms of the small parameters U_{e3} and pi/4 - theta_{23}, and show that there are universal first and second order corrections. The second order term can exceed the first order term, and so should be included in any analytic study. We also investigate the probabilities and ratios after a further expansion around the tribimaximal value of sin^2 theta_{12} = 1/3. In the second part of the paper, we discuss implications of deviations of initial flavor ratios from the usually assumed, idealized flavor compositions for pion, muon-damped, and neutron beam sources, viz., (1 : 2 : 0), (0 : 1 : 0), and (1 : 0 : 0), respectively. We show that even small deviations have significant consequences for the observed flavor ratios at Earth. If initial flavor deviations are not taken into account in analyses, then false inferences for the values in the PMNS matrix elements (angles and phase) may result.Comment: 32 pages, 15 figures. Minor changes, matches version in JHE

Simulated-tempering approach to spin-glass simulations

After developing an appropriate iteration procedure for the determination of the parameters, the method of simulated tempering has been successfully applied to the 2D Ising spin glass. The reduction of the slowing down is comparable to that of the multicanonical algorithm. Simulated tempering has, however, the advantages to allow full vectorization of the programs and to provide the canonical ensemble directly.Comment: 12 pages (LaTeX), 4 postscript figures, uufiles encoded, submitted to Physical Review

Large and Almost Maximal Neutrino Mixing within the Type II See-Saw Mechanism

Within the type II see-saw mechanism the light neutrino mass matrix is given by a sum of a direct (or triplet) mass term and the conventional (type I) see-saw term. Both versions of the see-saw mechanism explain naturally small neutrino masses, but the type II scenario offers interesting additional possibilities to explain large or almost maximal or vanishing mixings which are discussed in this paper. We first introduce ``type II enhancement'' of neutrino mixing, where moderate cancellations between the two terms can lead to large neutrino mixing even if all individual mass matrices and terms generate small mixing. However, nearly maximal or vanishing mixings are not naturally explained in this way, unless there is a certain initial structure (symmetry) which enforces certain elements of the matrices to be identical or related in a special way. We therefore assume that the leading structure of the neutrino mass matrix is the triplet term and corresponds to zero U_{e3} and maximal theta_{23}. Small but necessary corrections are generated by the conventional see-saw term. Then we assume that one of the two terms corresponds to an extreme mixing scenario, such as bimaximal or tri-bimaximal mixing. Deviations from this scheme are introduced by the second term. One can mimic Quark-Lepton Complementarity in this way. Finally, we note that the neutrino mass matrix for tri-bimaximal mixing can be -- depending on the mass hierarchy -- written as a sum of two terms with simple structure. Their origin could be the two terms of type II see-saw.Comment: 25 pages. Comments and references added, to appear in JHE

Leptogenesis and low energy observables in left-right symmetric models

In the context of left-right symmetric models we study the connection of leptogenesis and low energy parameters such as neutrinoless double beta decay and leptonic CP violation. Upon imposition of a unitarity constraint, the neutrino parameters are significantly restricted and the Majorana phases are determined within a narrow range, depending on the kind of solar solution. One of the Majorana phases gets determined to a good accuracy and thereby the second phase can be probed from the results of neutrinoless double beta decay experiments. We examine the contributions of the solar and atmospheric mass squared differences to the asymmetry and find that in general the solar scale dominates. In order to let the atmospheric scale dominate, some finetuning between one of the Majorana phases and the Dirac CP phase is required. In this case, one of the Majorana phases is determined by the amount of CP violation in oscillation experiments.Comment: 18 pages, 6 figures. Matches version to appear in PR

The Free Quon Gas Suffers Gibbs' Paradox

We consider the Statistical Mechanics of systems of particles satisfying the $q$-commutation relations recently proposed by Greenberg and others. We show that although the commutation relations approach Bose (resp.\ Fermi) relations for $q\to1$ (resp.\ $q\to-1$), the partition functions of free gases are independent of $q$ in the range $-1<q<1$. The partition functions exhibit Gibbs' Paradox in the same way as a classical gas without a correction factor $1/N!$ for the statistical weight of the $N$-particle phase space, i.e.\ the Statistical Mechanics does not describe a material for which entropy, free energy, and particle number are extensive thermodynamical quantities.Comment: number-of-pages, LaTeX with REVTE

Minimal Mass Matrices for Dirac Neutrinos

We consider the possibility of neutrinos being Dirac particles and study minimal mass matrices with as much zero entries as possible. We find that up to 5 zero entries are allowed. Those matrices predict one vanishing mass state, CP conservation and U_{e3} either zero or proportional to R, where R is the ratio of the solar and atmospheric \Delta m^2. Matrices containing 4 zeros can be classified in categories predicting U_{e3} = 0, U_{e3} \neq 0 but no CP violation or |U_{e3}| \neq 0 and possible CP violation. Some cases allow to set constraints on the neutrino masses. The characteristic value of U_{e3} capable of distinguishing some of the cases with non-trivial phenomenological consequences is about R/2 \sin 2 \theta_{12}. Matrices containing 3 and less zero entries imply (with a few exceptions) no correlation for the observables. We outline models leading to the textures based on the Froggatt-Nielsen mechanism or the non-Abelian discrete symmetry D_4 \times Z_2.Comment: 32 pages, 3 figures. Comments and references added. To appear in JHE

Linear Collider Test of a Neutrinoless Double Beta Decay Mechanism in left-right Symmetric Theories

There are various diagrams leading to neutrinoless double beta decay in left-right symmetric theories based on the gauge group SU(2)_L x SU(2)_R. All can in principle be tested at a linear collider running in electron-electron mode. We argue that the so-called lambda-diagram is the most promising one. Taking the current limit on this diagram from double beta decay experiments, we evaluate the relevant cross section e e to W_L W_R, where W_L is the Standard Model W-boson and W_R the one from SU(2)_R. It is observable if the life-time of double beta decay and the mass of the W_R are close to current limits. Beam polarization effects and the high-energy behaviour of the cross section are also analyzed.Comment: 17 pages, 6 figures. v2: minor changes, references added, to be published in EPJ

Search for Doubly-Charged Higgs Boson Production at HERA

A search for the single production of doubly-charged Higgs bosons H^{\pm \pm} in ep collisions is presented. The signal is searched for via the Higgs decays into a high mass pair of same charge leptons, one of them being an electron. The analysis uses up to 118 pb^{-1} of ep data collected by the H1 experiment at HERA. No evidence for doubly-charged Higgs production is observed and mass dependent upper limits are derived on the Yukawa couplings h_{el} of the Higgs boson to an electron-lepton pair. Assuming that the doubly-charged Higgs only decays into an electron and a muon via a coupling of electromagnetic strength h_{e \mu} = \sqrt{4 \pi \alpha_{em}} = 0.3, a lower limit of 141 GeV on the H^{\pm\pm} mass is obtained at the 95% confidence level. For a doubly-charged Higgs decaying only into an electron and a tau and a coupling h_{e\tau} = 0.3, masses below 112 GeV are ruled out.Comment: 15 pages, 3 figures, 1 tabl