6,488 research outputs found

    The role of season and salinity in influencing barnacle distributions in two adjacent coastal mangrove lagoons

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    Author Posting. © University of Miami - Rosenstiel School of Marine and Atmospheric Science, 2011. This article is posted here by permission of University of Miami - Rosenstiel School of Marine and Atmospheric Science for personal use, not for redistribution. The definitive version was published in Bulletin of Marine Science 87 (2011): 275-299, doi:10.5343/bms.2010.1022.Barnacles are often abundant on roots and branches of mangrove trees in tidal channels and coastal lagoons of the Pacific coast of Panama. Yet, in some coastal lagoons, barnacles are absent. We investigated pre- and post-settlement factors that affect barnacle distributions in two adjacent coastal lagoons in Bahía Honda, Panama, one with moderate to large barnacle populations, and the other with nearly non-existent populations. Although mean barnacle recruitment was higher on mangrove root segments during the dry season (December-April) than in the wet season (May-November), it was not significantly different between the two coastal lagoons. The coastal lagoon with fewer barnacles is considered an estuary, with high freshwater flow and low salinities (0.1) during the wet season that were lethal to barnacle nauplii and cyprids. Furthermore, coastal water was not observed to enter the lagoon, even during flood tides. In contrast, more barnacles were found in the lagoon with higher salinities (8.5). During the dry season, freshwater flow was greatly reduced in both lagoons, resulting in a similar salinity range (22-33). We conclude that the lack of barnacles in the estuarine coastal lagoon is largely due to high flushing rates and low salinities that reduce larval concentrations during the wet season. Moreover, low adult abundance in the lagoon's interior may further reduce larval supply and settlement.Finally, we would like to thank the Ocean Life Institute of the Woods Hole Oceanographic Institution for funding to JP to complete research in the Liquid Jungle Lab.2014-07-0

    Human colonic in vitro fermentation of water-soluble arabinoxylans from hard and soft wheat alters Bifidobacterium abundance and short-chain fatty acids concentration

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    The human intestinal microbiome plays an important role in health due to the large number of beneficial effects related to the bacterial profile and the metabolites generated in the intestine. Arabinoxylans are compounds present in different cereals such as wheat and they can modulate the profile and functioning of some beneficial bacteria from human intestinal microbiota. In the present work, a colonic in vitro fermentation with human faecal inoculum was done using arabinoxylans extracted from Argentinian hard and soft wheat as substrates. Molecular size alteration of arabinoxylans were studied during fermentation and Lactobacillus and Bifidobacterium abundance as well as short chain fatty acids concentrations were determined. The arabinoxylans fermentation was proved to induce the growth of Bifidobacterium and the release of short-chain fatty acids. The speed and efficiency of fermentation were different for each of the arabinoxylan extracted from both wheat genotypes, perhaps because of differences in their chemical and physical structures. The consumption of water-extractable arabinoxylans (WE-AX) (either supplemented or enriched) to maintain the balance or modulate in a favorable way the profile of Bifidobacterium can be an important contribution to the human health.Fil: Paesani, Candela. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Ciencia y Tecnología de Alimentos Córdoba. Universidad Nacional de Córdoba. Facultad de Ciencias Químicas. Instituto de Ciencia y Tecnología de Alimentos Córdoba; ArgentinaFil: Sciarini, Lorena Susana. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Ciencia y Tecnología de Alimentos Córdoba. Universidad Nacional de Córdoba. Facultad de Ciencias Químicas. Instituto de Ciencia y Tecnología de Alimentos Córdoba; ArgentinaFil: Moiraghi, Malena. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Ciencia y Tecnología de Alimentos Córdoba. Universidad Nacional de Córdoba. Facultad de Ciencias Químicas. Instituto de Ciencia y Tecnología de Alimentos Córdoba; Argentina. Universidad Católica de Córdoba. Facultad de Ciencias Agropecuarias; ArgentinaFil: Salvucci, Emiliano Jesus. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Ciencia y Tecnología de Alimentos Córdoba. Universidad Nacional de Córdoba. Facultad de Ciencias Químicas. Instituto de Ciencia y Tecnología de Alimentos Córdoba; ArgentinaFil: Prado, Samira B. R.. Universidade de Sao Paulo; BrasilFil: Perez, Gabriela Teresa. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Ciencia y Tecnología de Alimentos Córdoba. Universidad Nacional de Córdoba. Facultad de Ciencias Químicas. Instituto de Ciencia y Tecnología de Alimentos Córdoba; Argentina. Universidad Católica de Córdoba. Facultad de Ciencias Agropecuarias; ArgentinaFil: Fabi, João Paulo. Universidade de Sao Paulo; Brasi

    Regulation of death receptor signaling by the autophagy protein TP53INP2

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    TP53INP2 positively regulates autophagy by binding to Atg8 proteins. Here, we uncover a novel role of TP53INP2 in death-receptor signaling. TP53INP2 sensitizes cells to apoptosis induced by death receptor ligands. In keeping with this, TP53INP2 deficiency in cultured cells or mouse livers protects against death receptor-induced apoptosis. TP53INP2 binds caspase-8 and the ubiquitin ligase TRAF6, thereby promoting the ubiquitination and activation of caspase-8 by TRAF6. We have defined a TRAF6-interacting motif (TIM) and a ubiquitin-interacting motif in TP53INP2, enabling it to function as a scaffold bridging already ubiquitinated caspase-8 to TRAF6 for further polyubiquitination of caspase-8. Mutations of key TIM residues in TP53INP2 abrogate its interaction with TRAF6 and caspase-8, and subsequently reduce levels of death receptor-induced apoptosis. A screen of cancer cell lines showed that those with higher protein levels of TP53INP2 are more prone to TRAIL-induced apoptosis, making TP53INP2 a potential predictive marker of cancer cell responsiveness to TRAIL treatment. These findings uncover a novel mechanism for the regulation of caspase-8 ubiquitination and reveal TP53INP2 as an important regulator of the death receptor pathway

    Shift toward prior knowledge confers a perceptual advantage in early psychosis and psychosis-prone healthy individuals

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    Many neuropsychiatric illnesses are associated with psychosis, i.e., hallucinations (perceptions in the absence of causative stimuli) and delusions (irrational, often bizarre beliefs). Current models of brain function view perception as a combination of two distinct sources of information: bottom-up sensory input and top-down influences from prior knowledge. This framework may explain hallucinations and delusions. Here, we characterized the balance between visual bottom-up and top-down processing in people with early psychosis (study 1) and in psychosis-prone, healthy individuals (study 2) to elucidate the mechanisms that might contribute to the emergence of psychotic experiences. Through a specialized mental-health service, we identified unmedicated individuals who experience early psychotic symptoms but fall below the threshold for a categorical diagnosis. We observed that, in early psychosis, there was a shift in information processing favoring prior knowledge over incoming sensory evidence. In the complementary study, we capitalized on subtle variations in perception and belief in the general population that exhibit graded similarity with psychotic experiences (schizotypy). We observed that the degree of psychosis proneness in healthy individuals, and, specifically, the presence of subtle perceptual alterations, is also associated with stronger reliance on prior knowledge. Although, in the current experimental studies, this shift conferred a performance benefit, under most natural viewing situations, it may provoke anomalous perceptual experiences. Overall, we show that early psychosis and psychosis proneness both entail a basic shift in visual information processing, favoring prior knowledge over incoming sensory evidence. The studies provide complementary insights to a mechanism by which psychotic symptoms may emerge

    Proposta metodológica de um sistema de avaliação do uso e expansão da cana-de-açúcar utilizando a abordagem de Landscape design.

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    Resumo: Com a crescente demanda e consequente expansão da produção de etanol, é inquestionável a necessidade de avaliar os impactos da produção de cana-de-açúcar sobre a sociedade e o meio ambiente. O conceito de Landscape Design visa a análise sustentável da paisagem levando em consideração aspectos ambientais e socioeconômicos envolvidos na paisagem e sua influência nesta; são planos para alocação de recursos que podem sugerir um caminho para a gestão mais sustentável da produção do etanol. Foram analisados vários artigos derivados deste conceito para verificar quais metodologias já haviam sido aplicadas com sucesso e, avaliado os prós e contras. Sendo assim, este trabalho propõe o uso de sistema de informação geográfica (SIG) e o método estatístico de análise de componentes principais (ACP), que faz uma correlação automática dos índices pré-selecionados e indica quais destes devem ser alocados em conjunto, gerando assim diversas componentes. A vantagem deste método é o fato de gerar mais de um mapa final, ou seja, são gerados componentes onde dentro delas só há dados correlacionados. Os mapas finais baseados na ACP devem ser considerados como um ponto de partida para políticas públicas. No entanto, há desafios, como a escolha inicial dos indicadores e na escala espacial desses dados

    Spatial analysis of the Halpha emission in the local star-forming UCM galaxies

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    We present a photometric study of the Halpha emission in the Universidad Complutense de Madrid (UCM) Survey galaxies. This work complements our previously-published spectroscopic data. We study the location of the star-forming knots, their intensity, concentration, and the relationship of these properties with those of the host galaxy. We also estimate that the amount of Halpha emission that arises from the diffuse ionized gas is about 15-30% of the total Halpha flux for a typical UCM galaxy. This percentage seems to be independent of the Hubble type. Conversely, we found that an `average' UCM galaxy harbours a star formation event with 30% of its Halpha luminosity arising from a nuclear component. The implications of these results for higher-redshift studies are discussed, including the effects of galaxy size and the depth of the observations. A correlation between the SFR and the Balmer decrement is observed, but such correlation breaks down for large values of the extinction. Finally, we recalculate the Halpha luminosity function and star formation rate density of the local Universe using the new imaging data. Our results point out that, on average, spectroscopic observations detected about one third of the total emission-line flux of a typical UCM galaxy. The new values obtained for the Halpha luminosity density and the star formation rate density of the local Universe are 10^(39.3+/-0.2) erg s-1 Mpc-3, and rho_SFR=0.016^(+0.007)_(-0.004) Mass_sun yr-1 Mpc-3 (H_0=50 km s-1 Mpc-1, Omega_M=1.0, Lambda=0). The corresponding values for the `concordance cosmology' (H_0=70 km s-1 Mpc-1, Omega_M=0.3, Lambda=0.7) are 10^(39.5+/-0.2) erg s-1 Mpc-3 rho_SFR=0.029^(+0.008)_(-0.005) Mass_sun yr-1 Mpc-3.Comment: 48 pages, 11 PostScript figures, 2 tables, accepted for publication in ApJ. Halpha images available at http://www.ucm.es/info/Astrof/UCM_Survey/UCM/ha_images.htm

    Sex-differences in oral anticoagulation therapy in patients hospitalized with atrial fibrillation:a nationwide cohort study

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    Background Important disparities in the treatment and outcomes of women and men with atrial fibrillation (AF) are well recognized. Whether introduction of direct oral anticoagulants has reduced disparities in treatment is uncertain. Methods and Results All patients who had an incident hospitalization from 2010 to 2019 with nonvalvular AF in Scotland were included in the present cohort study. Community drug dispensing data were used to determine prescribed oral anticoagulation therapy and comorbidity status. Logistic regression modeling was used to evaluate patient factors associated with treatment with vitamin K antagonists and direct oral anticoagulants. A total of 172 989 patients (48% women [82 833 of 172 989]) had an incident hospitalization with nonvalvular AF in Scotland between 2010 and 2019. By 2019, factor Xa inhibitors accounted for 83.6% of all oral anticoagulants prescribed, while treatment with vitamin K antagonists and direct thrombin inhibitors declined to 15.9% and 0.6%, respectively. Women were less likely to be prescribed any oral anticoagulation therapy compared with men (adjusted odds ratio [aOR], 0.68 [95% CI, 0.67–0.70]). This disparity was mainly attributed to vitamin K antagonists (aOR, 0.68 [95% CI, 0.66–0.70]), while there was less disparity in the use of factor Xa inhibitors between women and men (aOR, 0.92 [95% CI, 0.90–0.95]). Conclusions Women with nonvalvular AF were significantly less likely to be prescribed vitamin K antagonists compared with men. Most patients admitted to the hospital in Scotland with incident nonvalvular AF are now treated with factor Xa inhibitors and this is associated with fewer treatment disparities between women and men

    Ucma/GRP inhibits phosphate-induced vascular smooth muscle cell calcification via SMAD-dependent BMP signalling

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    Vascular calcification (VC) is the process of deposition of calcium phosphate crystals in the blood vessel wall, with a central role for vascular smooth muscle cells (VSMCs). VC is highly prevalent in chronic kidney disease (CKD) patients and thought, in part, to be induced by phosphate imbalance. The molecular mechanisms that regulate VC are not fully known. Here we propose a novel role for the mineralisation regulator Ucma/GRP (Upper zone of growth plate and Cartilage Matrix Associated protein/Gla Rich Protein) in phosphate-induced VSMC calcification. We show that Ucma/GRP is present in calcified atherosclerotic plaques and highly expressed in calcifying VSMCs in vitro. VSMCs from Ucma/GRP(-/-) mice showed increased mineralisation and expression of osteo/chondrogenic markers (BMP-2, Runx2, beta-catenin, p-SMAD1/5/8, ALP, OCN), and decreased expression of mineralisation inhibitor MGP, suggesting that Ucma/GRP is an inhibitor of mineralisation. Using BMP signalling inhibitor noggin and SMAD1/5/8 signalling inhibitor dorsomorphin we showed that Ucma/GRP is involved in inhibiting the BMP-2-SMAD1/5/8 osteo/chondrogenic signalling pathway in VSMCs treated with elevated phosphate concentrations. Additionally, we showed for the first time evidence of a direct interaction between Ucma/GRP and BMP-2. These results demonstrate an important role of Ucma/GRP in regulating osteo/chondrogenic differentiation and phosphate-induced mineralisation of VSMCs.NWO ZonMw [MKMD 40-42600-98-13007]; FCT [SFRH/BPD/70277/2010]info:eu-repo/semantics/publishedVersio

    Method for Independent Estimation of the False Localization Rate for Phosphoproteomics

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    Phosphoproteomic methods are commonly employed to identify and quantify phosphorylation sites on proteins. In recent years, various tools have been developed, incorporating scores or statistics related to whether a given phosphosite has been correctly identified or to estimate the global false localization rate (FLR) within a given data set for all sites reported. These scores have generally been calibrated using synthetic datasets, and their statistical reliability on real datasets is largely unknown, potentially leading to studies reporting incorrectly localized phosphosites, due to inadequate statistical control. In this work, we develop the concept of scoring modifications on a decoy amino acid, that is, one that cannot be modified, to allow for independent estimation of global FLR. We test a variety of amino acids, on both synthetic and real data sets, demonstrating that the selection can make a substantial difference to the estimated global FLR. We conclude that while several different amino acids might be appropriate, the most reliable FLR results were achieved using alanine and leucine as decoys. We propose the use of a decoy amino acid to control false reporting in the literature and in public databases that re-distribute the data. Data are available via ProteomeXchange with identifier PXD028840
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