182 research outputs found
Closing the Gap Between Nano- and Macroscale: Atomic Interactions vs. Macroscopic Materials Behavior
Correlations of Composition, Structure, and Hardness in the High-Entropy Alloy System Nb–Mo–Ta–W
High-fidelity simulations of CdTe vapor deposition from a new bond-order potential-based molecular dynamics method
CdTe has been a special semiconductor for constructing the lowest-cost solar
cells and the CdTe-based Cd1-xZnxTe alloy has been the leading semiconductor
for radiation detection applications. The performance currently achieved for
the materials, however, is still far below the theoretical expectations. This
is because the property-limiting nanoscale defects that are easily formed
during the growth of CdTe crystals are difficult to explore in experiments.
Here we demonstrate the capability of a bond order potential-based molecular
dynamics method for predicting the crystalline growth of CdTe films during
vapor deposition simulations. Such a method may begin to enable defects
generated during vapor deposition of CdTe crystals to be accurately explored
Ab initio study of the modification of elastic properties of alpha-iron by hydrostatic strain and by hydrogen interstitials
The effect of hydrostatic strain and of interstitial hydrogen on the elastic
properties of -iron is investigated using \textit{ab initio}
density-functional theory calculations. We find that the cubic elastic
constants and the polycrystalline elastic moduli to a good approximation
decrease linearly with increasing hydrogen concentration. This net strength
reduction can be partitioned into a strengthening electronic effect which is
overcome by a softening volumetric effect. The calculated hydrogen-dependent
elastic constants are used to determine the polycrystalline elastic moduli and
anisotropic elastic shear moduli. For the key slip planes in -iron,
and , we find a shear modulus reduction of
approximately 1.6% per at.% H.Comment: Updated first part of 1009.378
Machine-learning of atomic-scale properties based on physical principles
We briefly summarize the kernel regression approach, as used recently in
materials modelling, to fitting functions, particularly potential energy
surfaces, and highlight how the linear algebra framework can be used to both
predict and train from linear functionals of the potential energy, such as the
total energy and atomic forces. We then give a detailed account of the Smooth
Overlap of Atomic Positions (SOAP) representation and kernel, showing how it
arises from an abstract representation of smooth atomic densities, and how it
is related to several popular density-based representations of atomic
structure. We also discuss recent generalisations that allow fine control of
correlations between different atomic species, prediction and fitting of
tensorial properties, and also how to construct structural kernels---applicable
to comparing entire molecules or periodic systems---that go beyond an additive
combination of local environments
Vertical stratification of the air microbiome in the lower troposphere
The troposphere constitutes the final frontier of global ecosystem research due to technical challenges arising from its size, low biomass, and gaseous state. Using a vertical testing array comprising a meteorological tower and a research aircraft, we conducted synchronized measurements of meteorological parameters and airborne biomass (n = 480) in the vertical air column up to 3,500 m. The taxonomic analysis of metagenomic data revealed differing patterns of airborne microbial community composition with respect to time of day and height above ground. The temporal and spatial resolution of our study demonstrated that the diel cycle of airborne microorganisms is a ground-based phenomenon that is entirely absent at heights >1,000 m. In an integrated analysis combining meteorological and biological data, we demonstrate that atmospheric turbulence, identified by potential temperature and high-frequency three-component wind measurements, is the key driver of bioaerosol dynamics in the lower troposphere. Multivariate regression analysis shows that at least 50% of identified airborne microbial taxa (n = ∼10,000) are associated with either ground or height, allowing for an understanding of dispersal patterns of microbial taxa in the vertical air column. Due to the interconnectedness of atmospheric turbulence and temperature, the dynamics of microbial dispersal are likely to be impacted by rising global temperatures, thereby also affecting ecosystems on the planetary surface
<i>Neisseria</i> species as pathobionts in bronchiectasis
Neisseria species are frequently identified in the bronchiectasis microbiome, but they are regarded as respiratory commensals. Using a combination of human cohorts, next-generation sequencing, systems biology, and animal models, we show that bronchiectasis bacteriomes defined by the presence of Neisseria spp. associate with poor clinical outcomes, including exacerbations. Neisseria subflava cultivated from bronchiectasis patients promotes the loss of epithelial integrity and inflammation in primary epithelial cells. In vivo animal models of Neisseria subflava infection and metabolipidome analysis highlight immunoinflammatory functional gene clusters and provide evidence for pulmonary inflammation. The murine metabolipidomic data were validated with human Neisseria-dominant bronchiectasis samples and compared with disease in which Pseudomonas-, an established bronchiectasis pathogen, is dominant. Metagenomic surveillance of Neisseria across various respiratory disorders reveals broader importance, and the assessment of the home environment in bronchiectasis implies potential environmental sources of exposure. Thus, we identify Neisseria species as pathobionts in bronchiectasis, allowing for improved risk stratification in this high-risk group.Published versio
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