The Coffea arabica Fungal Pathosystem in New Caledonia: Interactions at Two Different Spatial Scales

International audienceThe simultaneous analysis of epidemioiogical and environmental vari- ables could contribute lo the determination of the main factors which govern the epidemic dynamics of diseases (i.e. rust, anthracnose and Cercospora leaf spot) in Coffea arahica. With this in mind, the condition of previously marked leaves in 29 plots, which were grou[)ed in 11 different sites in New Caledonia, were surveyed monthly, in the same period, the environmental characteristics of the plots (soil type, climate, etc.) were determined. Statistical analysis of these data revealed significant correlations between pathology and the environment, at the sites" level (analysis of the mean site values) as well as at the plots' level (analysis of the deviations with the mean site value). The site effects predominated; at those sites in which rust was the major disease, leaf and branch mortality were more pronounced than at sites in which anthracnose or Cercospora leaf spot predominated. Rust was generally associated with soil pH values that were favourable for coffee tree development, with poor soil structure and with large temperature ranges. Within a site, plotexposure to sun and wind could enhance anthracnose and Cercospora leaf spot. Finally, in New Caledonia the three variables soil pH, soil structure and temperature range allow a simple and satisfactory' estimation of the epidemiologicai risks iti a given plo

Continuous-Flow Microelectroextraction for Enrichment of Low Abundant Compounds

We present a continuous-flow microelectroextraction flow cell that allows for electric field enhanced extraction of analytes from a large volume (1 mL) of continuously flowing donor phase into a micro volume of stagnant acceptor phase (13.4 μL). We demonstrate for the first time that the interface between the stagnant acceptor phase and fast-flowing donor phase can be stabilized by a phaseguide. Chip performance was assessed by visual experiments using crystal violet. Then, extraction of a mixture of acylcarnitines was assessed by off-line coupling to reversed phase liquid chromatography coupled to time-of-flight mass spectrometry, resulting in concentration factors of 80.0 ± 9.2 times for hexanoylcarnitine, 73.8 ± 9.1 for octanoylcarnitine, and 34.1 ± 4.7 times for lauroylcarnitine, corresponding to recoveries of 107.8 ± 12.3%, 98.9 ± 12.3%, and 45.7 ± 6.3%, respectively, in a sample of 500 μL delivered at a flow of 50 μL min(-1) under an extraction voltage of 300 V. Finally, the method was applied to the analysis of acylcarnitines spiked to urine, resulting in detection limits as low as 0.3-2 nM. Several putative endogenous acylcarnitines were found. The current flowing-to-stagnant phase microelectroextraction setup allows for the extraction of milliliter range volumes and is, as a consequence, very suited for analysis of low-abundant metabolites.Analytical BioScience

Differences in testosterone and its precursors by sex of the offspring in meconium

Prenatal metabolism exerts profound effects on development. The first stool of the newborn, meconium, provides a window into the prenatal metabolic environment. The objective of this study was to examine the feasibility of meconium as a novel matrix to quantify prenatal steroid levels. We quantified parameters of analytical interest regarding the use of meconium, including sample stability. We hypothesized that meconium steroid content would differ by sex, prompting analysis of meconium to test effects of prenatal steroid metabolism. Meconium from 193 newborns enrolled in the Early Autism Risk Longitudinal Investigation (EARLI) study, including 107 males, and 86 females, were analyzed by isotope dilution-liquid chromatography-high resolution mass spectrometry (ID-LC-HRMS) while blinded to identity for testosterone (T), androstenedione (AD), and dehydroepiandrosterone (DHEA). Steroids levels were compared by sex, and investigations of potential trends resulting from sample storage or processing was conducted. The unconjugated steroid content of meconium in ng/g (mean, standard deviation) was for males: T (2.67, 8.99), AD (20.01, 28.12), DHEA (13.96, 23.57) and for females: T (0.82, 1.63), AD (22.32, 24.38), DHEA (21.06, 43.49). T was higher in meconium from males (p = 0.0333), and DHEA was higher in meconium from females (p = 0.0202). 6 female and 3 male T values were below the limit of detection. No extreme variability in hydration or trend in steroid levels by storage time was detected. Sexually dimorphic levels of hormones may reflect gestational differentiation, and future studies should consider meconium analysis

Castor Bean Metabolomics: Current Knowledge and Perspectives Toward Understanding of Plant Plasticity Under Stress Condition

Metabolomics provides vital information for the understanding of biological processes and has been vastly applied in plant studies. Several metabolite-profiling studies have correlated physiological events, such as germination or seedling establishment, with metabolic and molecular changes under different environmental conditions. Castor bean displays high plasticity during initial vegetative growth, which is reflected in the metabolome of the seeds and seedlings. In general, several metabolite-profiling techniques are required to obtain a complete response in terms of metabolism plasticity of the studied biological system. Carbohydrates, amino acids, and organic acids have been measured in castor bean seeds and seedlings by nuclear magnetic resonance, gas chromatography coupled to a quadrupole time of flight mass spectrometry (GC-TOF-MS), as well as by high-performance liquid chromatography (HPLC). Fatty acids and some secondary metabolites have been quantified in castor bean seeds and seedlings by gas chromatography coupled to a triple-axis detector (GC-MS). In this chapter, we initially discuss how metabolomics studies suggested a possible role of gamma-aminobutyric acid (GABA) accumulation during early imbibitions and seedling establishment. Later, we consider a specific metabolic signature of castor bean: a shift in carbon–nitrogen metabolism as its main biochemical response to high temperatures. This metabolic shift is usually associated with adjusted growth, and it is likely involved in maintaining cellular homeostasis under heat stress. The castor bean metabolome has been vastly investigated, especially with regard to its ability to respond to external stimuli. These results might help us understand the molecular requirements for vigorous castor bean seed germination and seedling growth under different environmental conditions