Puzzles for Matrix Models of Chiral Field Theories

We summarize the field-theory/matrix model correspondence for a chiral N=1 model with matter in the adjoint, antisymmetric and conjugate symmetric representations as well as eight fundamentals to cancel the chiral anomaly. The associated holomorphic matrix model is consistent only for two fundamental fields, which requires a modification of the original Dijkgraaf-Vafa conjecture. The modified correspondence holds in spite of this mismatch.Comment: Contribution to the proceedings of the 36th International Symposium Ahrenshoop, Berlin, August 26-30, 2003; 6 Page

Chiral field theories, Konishi anomalies and matrix models

We study a chiral N=1, U(N) field theory in the context of the Dijkgraaf-Vafa correspondence. Our model contains one adjoint, one conjugate symmetric and one antisymmetric chiral multiplet, as well as eight fundamentals. We compute the generalized Konishi anomalies and compare the chiral ring relations they induce with the loop equations of the (intrinsically holomorphic) matrix model defined by the tree-level superpotential of the field theory. Surprisingly, we find that the matrix model is well-defined only if the number of flavors equals two! Despite this mismatch, we show that the 1/N expansion of the loop equations agrees with the generalized Konishi constraints. This indicates that the matrix model - gauge theory correspondence should generally be modified when applied to theories with net chirality. We also show that this chiral theory produces the same gaugino superpotential as a nonchiral SO(N) model with a single symmetric multiplet and a polynomial superpotential.Comment: 43 page

Chiral field theories from conifolds

We discuss the geometric engineering and large n transition for an N=1 U(n) chiral gauge theory with one adjoint, one conjugate symmetric, one antisymmetric and eight fundamental chiral multiplets. Our IIB realization involves an orientifold of a non-compact Calabi-Yau A_2 fibration, together with D5-branes wrapping the exceptional curves of its resolution as well as the orientifold fixed locus. We give a detailed discussion of this background and of its relation to the Hanany-Witten realization of the same theory. In particular, we argue that the T-duality relating the two constructions maps the Z_2 orientifold of the Hanany-Witten realization into a Z_4 orientifold in type IIB. We also discuss the related engineering of theories with SO/Sp gauge groups and symmetric or antisymmetric matter.Comment: 34 pages, 8 figures, v2: References added, minor correction

(Anti)symmetric matter and superpotentials from IIB orientifolds

We study the IIB engineering of N=1 gauge theories with unitary gauge group and matter in the adjoint and (anti)symmetric representations. We show that such theories can be obtained as Z2 orientifolds of Calabi-Yau A2 fibrations, and discuss the explicit T-duality transformation to an orientifolded Hanany-Witten construction. The low energy dynamics is described by a geometric transition of the orientifolded background. Unlike previously studied cases, we show that the orientifold 5-`plane' survives the transition, thus bringing a nontrivial contribution to the effective superpotential. We extract this contribution by using matrix model results and compare with geometric data. A Higgs branch of our models recovers the engineering of SO/Sp theories with adjoint matter through an O5-`plane' T-dual to an O6-plane. We show that the superpotential agrees with that produced by engineering through an O5-`plane' dual to an O4-plane, even though the orientifold of this second construction is replaced by fluxes after the transition.Comment: 40 page

Hydrodynamics in 1+1 dimensions with gravitational anomalies

The constraints imposed on hydrodynamics by the structure of gauge and gravitational anomalies are studied in two dimensions. By explicit integration of the consistent gravitational anomaly, we derive the equilibrium partition function at second derivative order. This partition function is then used to compute the parity-violating part of the covariant energy-momentum tensor and the transport coefficients.Comment: 9 pages, JHEP format.v2; added comments and references, matching published versio

Current Comparative Table (CCT) automates customized searches of dynamic biological databases

The Current Comparative Table (CCT) software program enables working biologists to automate customized bioinformatics searches, typically of remote sequence or HMM (hidden Markov model) databases. CCT currently supports BLAST, hmmpfam and other programs useful for gene and ortholog identification. The software is web based, has a BioPerl core and can be used remotely via a browser or locally on Mac OS X or Linux machines. CCT is particularly useful to scientists who study large sets of molecules in today's evolving information landscape because it color-codes all result files by age and highlights even tiny changes in sequence or annotation. By empowering non-bioinformaticians to automate custom searches and examine current results in context at a glance, CCT allows a remote database submission in the evening to influence the next morning's bench experiment. A demonstration of CCT is available at and the open source software is freely available from

More on Meta-Stable Brane Configuration

We describe the intersecting brane configuration of type IIA string theory corresponding to the meta-stable nonsupersymmetric vacua in four dimensional N=1 supersymmetric SU(N_c) gauge theory with an antisymmetric flavor, a conjugate symmetric flavor, eight fundamental flavors, m_f fundamental flavors and m_f antifundamental flavors. This is done by analyzing the N=1 supersymmetric SU(2m_f-N_c+4) magnetic gauge theory with dual matters and the corresponding dual superpotential.Comment: 20 pp, 3 figures; Pages 11,12, and 14 improved; to appear in CQ

Constructing Gauge Theory Geometries from Matrix Models

We use the matrix model -- gauge theory correspondence of Dijkgraaf and Vafa in order to construct the geometry encoding the exact gaugino condensate superpotential for the N=1 U(N) gauge theory with adjoint and symmetric or anti-symmetric matter, broken by a tree level superpotential to a product subgroup involving U(N_i) and SO(N_i) or Sp(N_i/2) factors. The relevant geometry is encoded by a non-hyperelliptic Riemann surface, which we extract from the exact loop equations. We also show that O(1/N) corrections can be extracted from a logarithmic deformation of this surface. The loop equations contain explicitly subleading terms of order 1/N, which encode information of string theory on an orientifolded local quiver geometry.Comment: 52 page

Meta-Stable Brane Configuration with Orientifold 6 Plane

We present the intersecting brane configuration of type IIA string theory corresponding to the meta-stable nonsupersymmetric vacua in four dimensional N=1 supersymmetric SU(N_c) gauge theory with a symmetric flavor, a conjugate symmetric flavor and fundamental flavors. By studying the previously known supersymmetric M5-brane curve, the M-theory lift for this type IIA brane configuration, which consists of NS5-branes, D4-branes, D6-branes and an orientifold 6-plane, is analyzed.Comment: 21 pp, 3 colored figures; stability arguments added in page 11 and 12, a typo in figure 3 corrected, and to appear in JHE