Foraging environment determines the genetic architecture and evolutionary potential of trophic morphology in cichlid fishes

Phenotypic plasticity allows organisms to change their phenotype in response to shifts in the environment. While a central topic in current discussions of evolutionary potential, a comprehensive understanding of the genetic underpinnings of plasticity is lacking in systems undergoing adaptive diversification. Here, we investigate the genetic basis of phenotypic plasticity in a textbook adaptive radiation, Lake Malawi cichlid fishes. Specifically, we crossed two divergent species to generate an F3 hybrid mapping population. At early juvenile stages, hybrid families were split and reared in alternate foraging environments that mimicked benthic/scraping or limnetic/sucking modes of feeding. These alternate treatments produced a variation in morphology that was broadly similar to the major axis of divergence among Malawi cichlids, providing support for the flexible stem theory of adaptive radiation. Next, we found that the genetic architecture of several morphological traits was highly sensitive to the environment. In particular, of 22 significant quantitative trait loci (QTL), only one was shared between the environments. In addition, we identified QTL acting across environments with alternate alleles being differentially sensitive to the environment. Thus, our data suggest that while plasticity is largely determined by loci specific to a given environment, it may also be influenced by loci operating across environments. Finally, our mapping data provide evidence for the evolution of plasticity via genetic assimilation at an important regulatory locus, ptch1. In all, our data address long-standing discussions about the genetic basis and evolution of plasticity. They also underscore the importance of the environment in affecting developmental outcomes, genetic architectures, morphological diversity and evolutionary potential

The effect of patients’ preference on outcome in the EVerT cryotherapy versus salicylic acid for the treatment of plantar warts (verruca) trial

Background Randomised controlled trials are widely accepted as the gold standard method to evaluate medical interventions, but they are still open to bias. One such bias is the effect of patient’s preference on outcome measures. The aims of this study were to examine whether patients’ treatment preference affected clearance of plantar warts and explore whether there were any associations between patients’ treatment preference and baseline variables in the EverT trial. Methods Two hundred and forty patients were recruited from University podiatry schools, NHS podiatry clinics and primary care. Patients were aged 12 years and over and had at least one plantar wart which was suitable for treatment with salicylic acid and cryotherapy. Patients were asked their treatment preference prior to randomisation. The Kruskal-Wallis test was performed to test the association between preference group and continuous baseline variables. The Fisher’s exact test was performed to test the association between preference group and categorical baseline variables. A logistic regression analysis was undertaken with verruca clearance (yes or no) as the dependent variable and treatment, age, type of verruca, previous treatment, treatment preference as independent variables. Two analyses were undertaken, one using the health professional reported outcome and one using the patient’s self reported outcomes. Data on whether the patient found it necessary to stop the treatment to which they had been allocated and whether they started another treatment were summarised by treatment group. Results Pre-randomisation preferences were: 10% for salicylic acid; 42% for cryotherapy and 48% no treatment preference. There was no evidence of an association between treatment preference group and either patient (p=0.95) or healthcare professional (p=0.46) reported verruca clearance rates. There was no evidence of an association between preference group and any of the baseline variables except gender, with more females expressing a preference for salicylic acid (p=0.004). There was no evidence that the number of times salicylic acid was applied was different between the preference groups at one week (p=0.89) or at three weeks (p=0.24). Similarly, for the number of clinic visits for cryotherapy (p=0.71) Conclusions This secondary analysis showed no evidence to suggest that patients’ baseline preferences affected verruca clearance rates or adherence with the treatment

Observations and numerical simulations of large-eddy circulation in the ocean surface mixed layer

Author Posting. © American Geophysical Union, 2014. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geophysical Research Letters 41 (2014): 7584–7590, doi:10.1002/2014GL061637.Two near-surface dye releases were mapped on scales of minutes to hours temporally, meters to order 1 km horizontally, and 1–20 m vertically using a scanning, depth-resolving airborne lidar. In both cases, dye evolved into a series of rolls with their major axes approximately aligned with the wind and/or near-surface current. In both cases, roll spacing was also of order 5–10 times the mixed layer depth, considerably larger than the 1–2 aspect ratio expected for Langmuir cells. Numerical large-eddy simulations under similar forcing showed similar features, even without Stokes drift forcing. In one case, inertial shear driven by light winds induced large aspect ratio large-eddy circulation. In the second, a preexisting lateral mixed layer density gradient provided the dominant forcing. In both cases, the growth of the large-eddy structures and the strength of the resulting dispersion were highly dependent on the type of forcing.Support for the 2004 field experiment was provided by the Cecil H. and Ida M. Green Technology Innovation Fund and Coastal Ocean Institute grant 27001545, both through Woods Hole Oceanographic Institution, and by Office of Naval Research grant N00014-01-1-0984. Support for the 2011 field experiments was provided by ONR grants N00014-09-1-0194, N00014-09-1-0175, N00014-11-WX-21010, N00014-12-WX-21031, and N00014-09-1-0460 and NSF grants OCE-0751734 and OCE-0751653. Simulations were supported under grant N00014-09-1-0268.2015-05-0

Facilitating the analysis of a UK national blood service supply chain using distributed simulation

In an attempt to investigate blood unit ordering policies, researchers have created a discrete-event model of the UK National Blood Service (NBS) supply chain in the Southampton area of the UK. The model has been created using Simul8, a commercial-off-the-shelf discrete-event simulation package (CSP). However, as more hospitals were added to the model, it was discovered that the length of time needed to perform a single simulation severely increased. It has been claimed that distributed simulation, a technique that uses the resources of many computers to execute a simulation model, can reduce simulation runtime. Further, an emerging standardized approach exists that supports distributed simulation with CSPs. These CSP Interoperability (CSPI) standards are compatible with the IEEE 1516 standard The High Level Architecture, the defacto interoperability standard for distributed simulation. To investigate if distributed simulation can reduce the execution time of NBS supply chain simulation, this paper presents experiences of creating a distributed version of the CSP Simul8 according to the CSPI/HLA standards. It shows that the distributed version of the simulation does indeed run faster when the model reaches a certain size. Further, we argue that understanding the relationship of model features is key to performance. This is illustrated by experimentation with two different protocols implementations (using Time Advance Request (TAR) and Next Event Request (NER)). Our contribution is therefore the demonstration that distributed simulation is a useful technique in the timely execution of supply chains of this type and that careful analysis of model features can further increase performance

Polarization instabilities in a two-photon laser

We describe the operating characteristics of a new type of quantum oscillator that is based on a two-photon stimulated emission process. This two-photon laser consists of spin-polarized and laser-driven $^{39}$K atoms placed in a high-finesse transverse-mode-degenerate optical resonator, and produces a beam with a power of $\sim$0.2 $\mu$W at a wavelength of 770 nm. We observe complex dynamical instabilities of the state of polarization of the two-photon laser, which are made possible by the atomic Zeeman degeneracy. We conjecture that the laser could emit polarization-entangled twin beams if this degeneracy is lifted.Comment: Accepted by Physical Review Letters. REVTeX 4 pages, 4 EPS figure

UBVRI Light Curves of 44 Type Ia Supernovae

We present UBVRI photometry of 44 type-Ia supernovae (SN Ia) observed from 1997 to 2001 as part of a continuing monitoring campaign at the Fred Lawrence Whipple Observatory of the Harvard-Smithsonian Center for Astrophysics. The data set comprises 2190 observations and is the largest homogeneously observed and reduced sample of SN Ia to date, nearly doubling the number of well-observed, nearby SN Ia with published multicolor CCD light curves. The large sample of U-band photometry is a unique addition, with important connections to SN Ia observed at high redshift. The decline rate of SN Ia U-band light curves correlates well with the decline rate in other bands, as does the U-B color at maximum light. However, the U-band peak magnitudes show an increased dispersion relative to other bands even after accounting for extinction and decline rate, amounting to an additional ~40% intrinsic scatter compared to B-band.Comment: 84 authors, 71 pages, 51 tables, 10 figures. Accepted for publication in the Astronomical Journal. Version with high-res figures and electronic data at http://astron.berkeley.edu/~saurabh/cfa2snIa

Optical Spectroscopy of Type Ia Supernovae

We present 432 low-dispersion optical spectra of 32 Type Ia supernovae (SNe Ia) that also have well-calibrated light curves. The coverage ranges from 6 epochs to 36 epochs of spectroscopy. Most of the data were obtained with the 1.5m Tillinghast telescope at the F. L. Whipple Observatory with typical wavelength coverage of 3700-7400A and a resolution of ~7A. The earliest spectra are thirteen days before B-band maximum; two-thirds of the SNe were observed before maximum brightness. Coverage for some SNe continues almost to the nebular phase. The consistency of the method of observation and the technique of reduction makes this an ideal data set for studying the spectroscopic diversity of SNe Ia.Comment: Accepted for publication in the Astronomical Journal, 109 pages (including data table), 44 figures, full resolution figures at http://www.noao.edu/noao/staff/matheson/Iaspec.ps.g

Search for the lepton-family-number nonconserving decay \mu -> e + \gamma

The MEGA experiment, which searched for the muon- and electron-number violating decay \mu -> e + \gamma, is described. The spectrometer system, the calibrations, the data taking procedures, the data analysis, and the sensitivity of the experiment are discussed. The most stringent upper limit on the branching ratio of \mu -> e + \gamma) < 1.2 x 10^{-11} was obtained

Nature vs. nurture in the low-density environment: structure and evolution of early-type dwarf galaxies in poor groups

We present the stellar population properties of 13 dwarf galaxies residing in poor groups (low-density environment, LDE) observed with VIMOS@VLT. Ages, metallicities, and [alpha/Fe] ratios were derived from the Lick indices Hbeta, Mgb, Fe5270 and Fe5335 through comparison with our simple stellar population (SSP) models accounting for variable [alpha/Fe] ratios. For a fiducial subsample of 10 early-type dwarfs we derive median values and scatters around the medians of 5.7 \pm 4.4 Gyr, -0.26 \pm 0.28, and -0.04 \pm 0.33 for age, log Z/Zsun, and [alpha/Fe], respectively. For a selection of bright early-type galaxies (ETGs) from the Annibali et al.2007 sample residing in comparable environment we derive median values of 9.8 \pm 4.1 Gyr, 0.06 \pm 0.16, and 0.18 \pm 0.13 for the same stellar population parameters. It follows that dwarfs are on average younger, less metal rich, and less enhanced in the alpha-elements than giants, in agreement with the extrapolation to the low mass regime of the scaling relations derived for giant ETGs. From the total (dwarf + giant) sample we derive that age \propto sigma^{0.39 \pm 0.22}, Z \propto sigma^{0.80 \pm 0.16}, and alpha/Fe \propto sigma^{0.42 \pm 0.22}. We also find correlations with morphology, in the sense that the metallicity and the [alpha/Fe] ratio increase with the Sersic index n or with the bulge-to-total light fraction B/T. The presence of a strong morphology-[alpha/Fe] relation appears to be in contradiction to the possible evolution along the Hubble sequence from low B/T (low n) to high B/T (high n) galaxies. We also investigate the role played by environment comparing the properties of our LDE dwarfs with those of Coma red passive dwarfs from the literature. We find possible evidence that LDE dwarfs experienced more prolonged star formations than Coma dwarfs, however larger data samples are needed to draw more firm conclusions.Comment: Accepted for publication on A&