A genetic algorithm for the minimum weight triangulation

In this paper, a new method for the minimum weight triangulation of points on a plane, called genetic minimum weight triangulation (GMWT), is presented based on the rationale of genetic algorithms. Polygon crossover and its algorithm for triangulations are proposed. New adaptive genetic operators, or adaptive crossover and mutation operators, are introduced. It is shown that the new method for the minimum weight triangulation can obtain more optimal results of triangulations than the greedy algorithm.published_or_final_versio

Large eddy simulation of spray and combustion characteristics with realistic chemistry and high-order numerical scheme under diesel engine-like conditions

The accuracy of large eddy simulation (LES) for turbulent combustion depends on suitably implemented numerical schemes and chemical mechanisms. In the original KIVA3V code, finite difference schemes such as QSOU (Quasi-second-order upwind) and PDC (Partial Donor Cell Differencing) cannot achieve good results or even computational stability when using coarse grids due to large numerical diffusion. In this paper, the MUSCL (Monotone Upstream-centered Schemes for Conservation Laws) differencing scheme is implemented into KIVA3V-LES code to calculate the convective term. In the meantime, Lu’s n-heptane reduced 58-species mechanisms (Lu, 2011) is used to calculate chemistry with a parallel algorithm. Finally, improved models for spray injection are also employed. With these improvements, the KIVA3V-LES code is renamed as KIVALES-CP (Chemistry with Parallel algorithm) in this study. The resulting code was used to study the gas–liquid two phase jet and combustion under various diesel engine-like conditions in a constant volume vessel. The results show that using the MUSCL scheme can accurately capture the spray shape and fuel vapor penetration using even a coarse grid, in comparison with the Sandia experimental data. Similarly good results are obtained for three single-component fuels, i-Octane (C8H18), n-Dodecanese (C12H26), and n-Hexadecane (C16H34) with very different physical properties. Meanwhile the improved methodology is able to accurately predict ignition delay and flame lift-off length (LOL) under different oxygen concentrations from 10% to 21% with ambient density increasing from 14.8 kg/m3 to 30.0 kg/m3 and ambient temperatures from 850 K to 1300 K in a constant volume combustion chamber. With increasing oxygen concentration, the ignition delay time and consequently the flame LOL decrease, as the flame moves upstream as expected. On the other hand, reduction in the ambient temperature from 1000 K to 900 K retards the auto-ignition time and moves the burning location downstream under different oxygen concentrations

Proteomic analyses reveal distinct chromatin-associated and soluble transcription factor complexes.

The current knowledge on how transcription factors (TFs), the ultimate targets and executors of cellular signalling pathways, are regulated by protein-protein interactions remains limited. Here, we performed proteomics analyses of soluble and chromatin-associated complexes of 56 TFs, including the targets of many signalling pathways involved in development and cancer, and 37 members of the Forkhead box (FOX) TF family. Using tandem affinity purification followed by mass spectrometry (TAP/MS), we performed 214 purifications and identified 2,156 high-confident protein-protein interactions. We found that most TFs form very distinct protein complexes on and off chromatin. Using this data set, we categorized the transcription-related or unrelated regulators for general or specific TFs. Our study offers a valuable resource of protein-protein interaction networks for a large number of TFs and underscores the general principle that TFs form distinct location-specific protein complexes that are associated with the different regulation and diverse functions of these TFs

Spatial, Temporal, and Human-Induced Variations in Suspended Sediment Concentration in the Surface Waters of the Yangtze Estuary and Adjacent Coastal Areas

To delineate temporal and spatial variations in suspended sediment concentration (SSC) in the Yangtze (Changjiang) Estuary and adjacent coastal waters, surface-water samples were taken twice daily from 10 stations over periods ranging from 2 to 12 years (total number of samples \u3e 28,000). Synoptic measurements in 2009 showed an increase in surface SSC from 0.058 g/l in the upper sections of the estuary to similar to 0.6 g/l at the Yangtze River turbidity maximum at the river mouth, decreasing seaward to 0.057 g/l. Annual periodicities reflect variations in the Yangtze discharge, which affect the horizontal distribution and transport of SSC, and seasonal winds, which result in vertical resuspension and mixing. Over the past 10-20 years, annual surface SSC in the lower Yangtze River and the upper estuary has decreased by 55%, due mainly to dam construction in the upper and middle reaches of the river. The 20-30% decrease in mean surface SSC in the lower estuary and adjacent coastal waters over the same period presumably reflects sediment resuspension, in part due to erosion of the subaqueous Yangtze Delta. SSCs in the estuary and adjacent coastal waters are expected to continue to decline as new dams are constructed in the Yangtze basin and as erosion of the subaqueous delta slows in coming decades

XMM-Newton and NuSTAR Observations of the Compact Millisecond Pulsar Binary PSR J1653–0158

We have presented the first joint XMM-Newton and NuSTAR analysis of the millisecond pulsar (MSP) binary PSR J1653−0158. The 75 minute orbital period inferred from optical and gamma-ray observations together with the 1.97 ms pulsation in the gamma-rays indicate that this system is the most compact Black Widow MSP system known to date. The orbital period was not detected in the XMM-Newton and NuSTAR data, probably due to insufficient photon counts obtained in the observations. Fitting the joint X-ray spectrum of PSR J1653−0158 with a power law gives a photon index Γ = 1.71 ± 0.09. The X-ray luminosity of the source in the (0.2–40) keV band is deduced to be 1.18 × 1031 erg s−1, for an adopted distance of 0.84 kpc. We have shown that the broadband X-ray spectrum can be explained by synchrotron radiation from electrons accelerated in the intrabinary shock, and the gamma-rays detected in the Fermi data are curvature radiations from electrons and positrons in the pulsar magnetosphere. Our kinematic analysis of the Tidarren systems PSR J1653–0158 and PSR J1311–3430 indicates that the two Tidarren systems are likely to have originated in the Galactic disk

Terahertz generation in Czochralski grown periodically poled Mg:Y:LiNbO3 via optical rectification

Using a canonical pump-probe experimental technique, we studied the terahertz (THz) waves generation and detection via optical rectification and mixing in Czochralski-grown periodically poled Mg:Y:LiNbO3 (PPLN) crystals. THz waves with frequencies at 1.37 THz and 0.68 THz as well as 1.8 THz were obtained for PPLN with nonlinear grating periods of 0.03 and 0.06 mm, respectively. A general theoretical model was developed by considering the dispersion and damping of low frequency phonon-polariton mode. Our results show that THz waves are generated in forward and backward directions via pumping pulse rectification. The generated THz waves depend on the spectral shape of the laser pulses, quasi-phase mismatches and dispersion characteristics of a crystal.Comment: 25 pages, 4 figure

Sex Differences in Intestinal P-glycoprotein Expression in Wistar versus Sprague Dawley Rats

Wistar and Sprague Dawley are the most common strains of rat used in pharmaceutical research and are used interchangeably in pre-clinical drug development. No studies have assessed whether Wistar and Sprague Dawley rats are equivalent in the gastrointestinal factors that influence oral drug absorption, specifically in relation to intestinal transporters. Enzyme-linked immunosorbent assay (ELISA) and liquid chromatography–tandem mass spectrometry (LC-MS/MS) are two reliable methods for quantifying intestinal protein levels with their own distinct advantages and limitations. In this study, P-glycoprotein (P-gp), a key efflux transporter, was quantified using ELISA and LC-MS/MS along the complete intestinal tract of male and female Wistar and Sprague Dawley rats. This work presents that Sprague Dawley rats have innately higher baseline P-gp expression than Wistar rats. Significant sex differences in P-gp expression were identified in the jejunum, ileum and colon between male and female Wistar rats using both techniques, with males exhibiting higher P-gp levels. Sprague Dawley rats showed no sex differences in P-gp expression through ELISA and LC-MS/MS. Both methods demonstrated similar trends for P-gp quantification, but ELISA could offer faster data acquisition. Our findings report significant sex differences between the strains and highlight that Wistar and Sprague Dawley rats are not equivalent in their P-gp expression. As humans exhibit distinct sex differences in intestinal P-gp levels, Wistar rats may therefore be a more suitable pre-clinical animal strain to model oral drug absorption of P-gp substrates in male and female subjects

A patient with asymptomatic severe acute respiratory syndrome (SARS) and antigenemia from the 2003-2004 community outbreak of SARS in Guangzhou, China.

An asymptomatic case of severe acute respiratory syndrome (SARS) occurred early in 2004, during a community outbreak of SARS in Guangzhou, China. This was the first time that a case of asymptomatic SARS was noted in an individual with antigenemia and seroconversion. The asymptomatic case patient and the second index case patient with SARS in the 2003-2004 outbreak both worked in the same restaurant, where they served palm civets, which were found to carry SARS-associated coronaviruses. Epidemiological information and laboratory findings suggested that the findings for the patient with asymptomatic infection, together with the findings from previously reported serological analyses of handlers of wild animals and the 4 index case patients from the 2004 community outbreak, reflected a likely intermediate phase of animal-to-human transmission of infection, rather than a case of human-to-human transmission. This intermediate phase may be a critical stage for virus evolution and disease prevention.published_or_final_versio

Complete chloroplast genome sequence of Holoparasite Cistanche Deserticola (Orobanchaceae) reveals gene loss and horizontal gene transfer from Its host Haloxylon Ammodendron (Chenopodiaceae)

The central function of chloroplasts is to carry out photosynthesis, and its gene content and structure are highly conserved across land plants. Parasitic plants, which have reduced photosynthetic ability, suffer gene losses from the chloroplast (cp) genome accompanied by the relaxation of selective constraints. Compared with the rapid rise in the number of cp genome sequences of photosynthetic organisms, there are limited data sets from parasitic plants. The authors report the complete sequence of the cp genome of Cistanche deserticola, a holoparasitic desert species belonging to the family Orobanchaceae

Mapping of periodically poled crystals via spontaneous parametric down-conversion

A new method for characterization of periodically poled crystals is developed based on spontaneous parametric down-conversion. The method is demonstrated on crystals of Y:LiNbO3, Mg:Y:LiNbO3 with non-uniform periodically poled structures, obtained directly under Czochralski growth procedure and designed for application of OPO in the mid infrared range. Infrared dispersion of refractive index, effective working periods and wavelengths of OPO were determined by special treatment of frequency-angular spectra of spontaneous parametric down-conversion in the visible range. Two-dimensional mapping via spontaneous parametric down-conversion is proposed for characterizing spatial distribution of bulk quasi-phase matching efficiency across the input window of a periodically poled sample.Comment: 19 pages, 6 figure