Spatial regression modeling of bus ridership using smart card data and various built environmental features

Bus boarding ridership is a key indicator for public transportation efficiency. Increased ridership can help reduce traffic congestion and positively affect the environment. This study aims to examine the spatial relationship between bus boarding ridership and the built environment, uti- lizing smart card and point of interest (POI) data. The research employs methods including ordinary least squares (OLS), spatial lag model (SLM), and geographically weighted regression (GWR) for comprehensive spatial analysis. A stepwise OLS model was employed to identify variables as inputs in the other models. The findings suggest that the GWR model provides a better understanding of the factors that affect bus boarding ridership

Study on the general dynamic model of biomass drying processes

[EN] Nowadays most studies of drying processes dynamics are established on empirical models without clear physical meanings, which could not predict the drying characteristic on different dryers. In order to describe the change of temperature and water content in the cut tobacco in different dryers, a mathematical model based on heat and mass transfer phenomena was developed, and the model employed the relationship of equilibrium moisture content and air humidity as basis, the difference of moisture between biomass and wet air as mass transfer driver, and the difference of temperature between biomass and wet air as heat transfer driver. The drying experiments under different air temperature and humidity are carried out on the batch rotary dryer, and the variance of temperature and moisture content in the biomass is obtained by using infrared thermometer and oven. The model is validated by two parameters with experiment data under each condition of air temperature and humidity. The results show that the drying dynamic model is well on accuracy and universality, and it could be applied on different drying device to predict the characteristic of kinds of drying processes.Wang, L.; Li, X.; Li, Q.; Lu, D.; Li, B.; Zhu, W.; Zhang, M.... (2018). Study on the general dynamic model of biomass drying processes. En IDS 2018. 21st International Drying Symposium Proceedings. Editorial Universitat Politècnica de València. 1671-1678. https://doi.org/10.4995/IDS2018.2018.7641OCS1671167

Identification of floR Variants Associated With a Novel Tn4371-Like Integrative and Conjugative Element in Clinical Pseudomonas aeruginosa Isolates

Florfenicol is widely used to control respiratory diseases and intestinal infections in food animals. However, there are increasing reports about florfenicol resistance of various clinical pathogens. floR is a key resistance gene that mediates resistance to florfenicol and could spread among different bacteria. Here, we investigated the prevalence of floR in 430 Pseudomonas aeruginosa isolates from human clinical samples and identified three types of floR genes (designated floR, floR-T1 and floR-T2) in these isolates, with floR-T1 the most prevalent (5.3%, 23/430). FloR-T2 was a novel floR variant identified in this study, and exhibited less identity with other FloR proteins than FloRv. Moreover, floR-T1 and floR-T2 identified in P. aeruginosa strain TL1285 were functionally active and located on multi-drug resistance region of a novel incomplete Tn4371-like integrative and conjugative elements (ICE) in the chromosome. The expression of the two floR variants could be induced by florfenicol or chloramphenicol. These results indicated that the two floR variants played an essential role in the host’s resistance to amphenicol and the spreading of these floR variants might be related with the Tn4371 family ICE

Identification and characterization of a novel β-lactamase gene, blaAMZ–1, from Achromobacter mucicolens

BackgroundAchromobacter is a genus of gram-negative bacteria that can act as opportunistic pathogens. Recent studies have revealed that some species of Achromobacter show inherent resistance to β-lactams, but the resistance mechanisms of Achromobacter mucicolens have rarely been reported.MethodThe bacterium was isolated using standard laboratory procedures. The agar dilution method was used to determine the minimum inhibitory concentrations (MICs). Genome sequencing was performed using the PacBio RS II and Illumina HiSeq 2500 platforms, and the Comprehensive Antibiotic Resistance Database (CARD) was used to annotate the drug resistance genes. The localization of the novel β-lactamase AMZ-1 was determined, and its characteristics were determined via molecular cloning and enzyme kinetic analysis. The phylogenetic relationship and comparative genomic analysis of the resistance gene-related sequences were also analyzed.ResultAchromobacter mucicolens Y3, isolated from a goose on a farm in Wenzhou, showed resistance to multiple antibiotics, including penicillins and cephalosporins. BlaAMZ–1 showed resistance to amoxicillin, penicillin G, ampicillin, cephalothin and cefoxitin, and the resistance activity could be inhibited by β-lactamase inhibitors. Enzyme kinetic analysis results showed that AMZ-1 has hydrolytic activity against a wide range of substrates, including cephalothin, amoxicillin, penicillin G, and cefoxitin but not ampicillin. The hydrolytic activity of AMZ-1 was greatly inhibited by avibactam but much more weakly inhibited by tazobactam. Mobile genetic elements could not be found around the blaAMZ–1-like genes, which are conserved on the chromosomes of bacteria of the genus Achromobacter.ConclusionIn this study, a novel AmpC gene, blaAMZ–1, from the animal-origin bacterium A. mucicolens Y3 was identified and characterized. It conferred resistance to some penicillins and first- and second-generation cephalosporins. The identification of this novel resistance gene will be beneficial for the selection of effective antimicrobials to treat associated infections

Identification and characterization of a novel chromosomal aminoglycoside 3’-O-phosphotransferase, APH(3′)-Id, from Kluyvera intermedia DW18 isolated from the sewage of an animal farm

BackgroundAminoglycosides, as important clinical antimicrobials, are used as second-line drugs for treating multidrug-resistant tuberculosis or combined with β-lactam drugs for treating severe infections such as sepsis. Aminoglycoside-modifying enzyme (AME) is the most important mechanism of aminoglycoside resistance and deserves more attention.MethodsThe bacterium Kluyvera intermedia DW18 was isolated from the sewage of an animal farm using the conventional method. The agar dilution method was used to determine the minimum inhibitory concentrations (MICs) of antimicrobials. A novel resistance gene was cloned, and the enzyme was expressed. The kinetic parameters were measured by a SpectraMax M5 multifunctional microplate reader. Bioinformatic analysis was performed to reveal the genetic context of the aph(3′)-Id gene and its phylogenetic relationship with other AMEs.ResultsA novel aminoglycoside 3′-O-phosphotransferase gene designated aph(3′)-Id was identified in K. intermedia DW18 and shared the highest amino acid identity of 77.49% with the functionally characterized aminoglycoside 3′-O-phosphotransferase APH(3′)-Ia. The recombinant plasmid carrying the novel resistance gene (pMD19-aph(3′)-Id/E. coli DH5α) showed 1,024-, 512-, 128- and 16-fold increased MIC levels for kanamycin, ribostamycin, paromomycin and neomycin, respectively, compared with the reference strain DH5α. APH(3′)-Id showed the highest catalytic efficiency for ribostamycin [kcat/Km of (4.96 ± 1.63) × 105 M−1/s−1], followed by paromomycin [kcat/Km of (2.18 ± 0.21) × 105 M−1/s−1], neomycin [kcat/Km of (1.73 ± 0.20) × 105 M−1/s−1], and kanamycin [kcat/Km of (1.10 ± 0.18) × 105 M−1/s−1]. Three conserved functional domains of the aminoglycoside phosphotransferase family and ten amino acid residues responsible for the phosphorylation of kanamycin were found in the amino acid sequence of APH(3′)-Id. No mobile genetic element (MGE) was discovered surrounding the aph(3′)-Id gene.ConclusionIn this work, a novel aminoglycoside 3’-O-phosphotransferase gene designated aph(3′)-Id encoded in the chromosome of the environmental isolate Kluyvera intermedia DW18 was identified and characterized. These findings will help clinicians select effective antimicrobials to treat infections caused by pathogens with this kind of resistance gene

BlaPSZ-1, a novel AmpC gene identified from a Pantoea isolate

BackgroundPantoea species of the family Erwiniaceae are well-known plant pathogens and animal and human conditional pathogens. Due to the widespread and continuous use of antimicrobials, multidrug-resistant strains continue to emerge, making clinical treatment difficult; therefore, there is an increasing need to clarify the mechanisms of drug resistance.MethodsA rabbit anal fecal sample was collected by a swab and the streak plate method was used to isolate single colonies. The standard agar dilution method was used to determine the minimum inhibitory concentrations (MICs) against antimicrobials. The complete genome sequence of the bacterium was obtained using Next-Generation Sequencing platforms. The potential resistance gene was annotated based on the Comprehensive Antibiotic Resistance Database (CARD) and verified by molecular cloning. The β-lactamase PSZ-1 was expressed via the pCold I expression vector and its enzyme kinetic parameters were analyzed. The genetic environment and evolutionary process of the novel resistance gene-related sequences were analyzed by bioinformatic methods.ResultsThe isolate Pantoea endophytica X85 showed some degree of resistance to penicillins as well as cephalosporins. A novel AmpC resistance gene, designated blaPSZ-1 in this research, was identified to be encoded in the plasmid (pPEX85) of P. endophytica X85. BlaPSZ-1 showed resistance to penicillins and several first-, second-and third-generation cephalosporins as well as aztreonam, but it did not show resistance to the fourth-generation cephalosporins or carbapenems tested. Enzyme kinetic assays revealed that it could hydrolyze amoxicillin, penicillin G, cephalothin, and cefazolin, and its hydrolytic activity could be strongly inhibited by the inhibitor avibactam, which was generally consistent with antimicrobial susceptibility testing results. No hydrolytic activity was observed for third-generation cephalosporins or aztreonam.ConclusionIn this study, a novel AmpC β-lactamase gene, designated blaPSZ-1, was characterized and it was encoded in the plasmid of the bacterium P. endophytica X85. It shows resistance to penicillins and several cephalosporins. The discovery of novel drug resistance mechanisms can help guide the scientific use of drugs in animal husbandry and clinical practice, effectively avoiding the abuse of antimicrobials and thus preventing the further development and spread of bacterial resistance

Size-Dependent Patterns of Seed Rain in Gaps in Temperate Secondary Forests, Northeast China

Secondary forests have become the major forest type worldwide, and are experiencing various disturbances and exhibiting obvious vegetation degradation (e.g., reduced biodiversity and decreased productivity) compared with primary forests. Forest gap is a common small-scale disturbance in secondary forests. Promoting natural regeneration under gap disturbance is an important approach to recover biodiversity and ecosystem services for temperate secondary forests. The gap size is the crucial characteristic controlling natural regeneration of many tree species. However, little is known about the spatiotemporal pattern of seed rain for gravity-dispersed and wind-dispersed tree species in gaps of varying sizes. The objectives of this study were to determine how seed rain of dominant tree species depend on gap size, and consequently, to explore some gap-based silviculture solutions for restoring secondary forests from the view of seed dispersal. The spatial distribution of seed rain in gaps with three sizes (large gaps of 250⁻350 m2, medium gaps of 150⁻250 m2, and small gaps of <150 m2), the temporal dynamics of seed rain over three years, and the relationship between seed rain and soil seed banks were explored in temperate secondary forests. The results showed that more than 90% of the seeds in seed rain were wind-dispersed, and their seed rain density and the contribution of seed rain to soil seed bank in medium gaps reached the highest (p = 0.03). The results suggest that establishing medium-sized gaps (i.e., gap size with 150⁻250 m2) in the secondary forests is more favorable for improving the natural regeneration potential (arrival of seeds and forming soil seed bank) of gap-dependent and wind-dispersed species (e.g., Acer mono) in gaps