Multi-core job submission and grid resource scheduling for ATLAS AthenaMP

AthenaMP is the multi-core implementation of the ATLAS software framework and allows the efficient sharing of memory pages between multiple threads of execution. This has now been validated for production and delivers a significant reduction on the overall application memory footprint with negligible CPU overhead. Before AthenaMP can be routinely run on the LHC Computing Grid it must be determined how the computing resources available to ATLAS can best exploit the notable improvements delivered by switching to this multi-process model. A study into the effectiveness and scalability of AthenaMP in a production environment will be presented. Best practices for configuring the main LRMS implementations currently used by grid sites will be identified in the context of multi-core scheduling optimisation

Increasing chromosome 1 copy number parallels histological progression in breast carcinogenesis

Chromosome 1 copy number in the benign breast lesions hyperplasia and atypical duct hyperplasia (ADH) was investigated using fluorescence in situ hybridization on paraffin sections. Progression of chromosome 1 changes occurring in parallel with histological progression from normal through hyperplasia and ADH to ductal carcinoma in situ (DCIS) and invasive carcinoma was also assessed, both overall and within individual patients. The mean signal number for normal cells was 1.14, while that for hyperplasia was 1.56 and ADH was 1.5, while values for DCIS of 1.95 and invasive duct carcinoma of 1.79, were higher (P< 0.001). Six of the seven cases also showed a significant trend towards an increasing proportion of cells with greater than 2 signals per nucleus occurring with histological progression (P< 0.001). These results support the concept that benign proliferative breast disease is a biological precursor of in-situ and invasive ductal carcinoma, the early histological changes possibly indicating a field effect with further genetic changes required for the development of a malignant phenotype. © 2000 Cancer Research Campaig

Tourism at the Glaciers

This presentation is the result of collaboration between researchers from the University of Canterbury and Lincoln University, bringing together our respective interests in the physical changes occurring at the Westland Glaciers and the consequential social effects - especially those related to the perceptions of visitors to the region. The recent changes at Fox and Franz Josef are evident to those who live and work here, and to those who have monitored these features over time. One of the aspects we wanted to explore is how aware visitors might be of changes, how their expectations about the glaciers matched their experiences, and how critical the glaciers themselves were to the ‘value’ of the Westland National Park experience. In addressing these sorts of questions, alongside improving our understanding of the physical conditions, the intention is to add to a database of information that can be used by those who live and work here, to make informed decisions about future delivery of the tourism experience.This on-going work is aligned to international studies of tourism in glacier environments – such as that in Athabasca Glacier, Jasper National Park – also experiencing environmental change

Remote Sensing of Chiral Signatures on Mars

We describe circular polarization as a remote sensing diagnostic of chiral signatures which may be applied to Mars. The remarkable phenomenon of homochirality provides a unique biosignature which can be amenable to remote sensing through circular polarization spectroscopy. The natural tendency of microbes to congregate in close knit communities would be beneficial for such a survey. Observations of selected areas of the Mars surface could reveal chiral signatures and hence explore the possibility of extant or preserved biological material. We describe a new instrumental technique that may enable observations of this form.Comment: 14 pages, 3 figures; to be published in Planetary and Space Scienc

Interpretation of Photoemission Spectra of (TaSe4)2I as Evidence of Charge Density Wave Fluctuations

The competition between different and unusual effects in quasi-one-dimensional conductors makes the direct interpretation of experimental measurements of these materials both difficult and interesting. We consider evidence for the existence of large charge-density-wave fluctuations in the conducting phase of the Peierls insulator (TaSe4)2I, by comparing the predictions of a simple Lee, Rice and Anderson theory for such a system with recent angle-resolved photoemission spectra. The agreement obtained suggests that many of the unusual features of these spectra may be explained in this way. This view of the system is contrasted with the behaviour expected of a Luttinger liquid.Comment: Archive copy of published paper. 19 pages, 12 figures, uses IOP macro

Differential p53 protein expression in breast cancer fine needle aspirates: the potential for in vivo monitoring

Fine needle aspiration (FNA) biopsy is the least invasive method of sampling breast cancer in vivo and provides material for breast cancer diagnosis. FNA has also been used to examine cellular markers to predict and monitor the effects of therapy. The aim of this study was to assess the accuracy of using FNA material compared with resected cancer for Western blotting studies of the p53 pathway, a key to tumour response to radiotherapy and chemotherapy. Paired samples of breast cancer FNAs collected pre-operatively and post-operatively were compared with tissue samples obtained at the time of surgical resection. Western blots were probed for p53 using the antibodies DO12 and DO1, and for levels of downstream proteins p21/WAF1 and p27. The protein extracted by FNA was sufficient for up to 5 Western blot studies. p53 expression and phosphorylation did not differ significantly pre- and post-operatively, indicating that intra-operative manipulation does not affect p53 expression or downstream activation in breast cancer. However, expression of p53, p21 and p27 varied between individual patients suggesting a range of p53 pathway activation in breast cancer. Immunohistochemistry confirmed that the cancer cells accounted for the protein expression detected on Western blots. FNA yields adequate protein for Western blotting studies and could be used as a method to monitor p53 activity in vivo before and during anti-cancer treatment possibly providing early evidence of tumour response to therapy. © 2001 Cancer Research Campaign  http://www.bjcancer.co

Lifetime of d-holes at Cu surfaces: Theory and experiment

We have investigated the hole dynamics at copper surfaces by high-resolution angle-resolved photoemission experiments and many-body quasiparticle GW calculations. Large deviations from a free-electron-like picture are observed both in the magnitude and the energy dependence of the lifetimes, with a clear indication that holes exhibit longer lifetimes than electrons with the same excitation energy. Our calculations show that the small overlap of d- and sp-states below the Fermi level is responsible for the observed enhancement. Although there is qualitative good agreement of our theoretical predictions and the measured lifetimes, there still exist some discrepancies pointing to the need of a better description of the actual band structure of the solid.Comment: 15 pages, 7 figures, 1 table, to appear in Phys. Rev.

Hole dynamics in noble metals

We present a detailed analysis of hole dynamics in noble metals (Cu and Au), by means of first-principles many-body calculations. While holes in a free-electron gas are known to live shorter than electrons with the same excitation energy, our results indicate that d-holes in noble metals exhibit longer inelastic lifetimes than excited sp-electrons, in agreement with experiment. The density of states available for d-hole decay is larger than that for the decay of excited electrons; however, the small overlap between d- and sp-states below the Fermi level increases the d-hole lifetime. The impact of d-hole dynamics on electron-hole correlation effects, which are of relevance in the analysis of time-resolved two-photon photoemission experiments, is also addressed.Comment: 4 pages, 2 figures, to appear in Phys. Rev. Let

High-resolution Ce 3d-edge resonant photoemission study of CeNi_2

Resonant photoemission (RPES) at the Ce 3d -> 4f threshold has been performed for alpha-like compound CeNi_2 with extremely high energy resolution (full width at half maximum < 0.2 eV) to obtain bulk-sensitive 4f spectral weight. The on-resonance spectrum shows a sharp resolution-limited peak near the Fermi energy which can be assigned to the tail of the Kondo resonance. However, the spin-orbit side band around 0.3 eV binding energy corresponding to the f_{7/2} peak is washed out, in contrast to the RPES spectrum at the Ce 3d -> 4f RPES threshold. This is interpreted as due to the different surface sensitivity, and the bulk-sensitive Ce 3d -> 4f RPES spectra are found to be consistent with other electron spectroscopy and low energy properties for alpha-like Ce-transition metal compounds, thus resolves controversy on the interpretation of Ce compound photoemission. The 4f spectral weight over the whole valence band can also be fitted fairly well with the Gunnarsson-Schoenhammer calculation of the single impurity Anderson model, although the detailed features show some dependence on the hybridization band shape and (possibly) Ce 5d emissions.Comment: 4 pages, 3 figur

Coincident evolution of glaciers and ice-marginal proglacial lakes across the Southern Alps, New Zealand: Past, present and future

Global glacier mass loss is causing expansion of proglacial landscapes and producing meltwater that can become impounded as lakes within natural topographic depressions or ‘overdeepenings’. It is important to understand the evolution of these proglacial landscapes for water resources, natural hazards and ecosystem services. In this study we (i) overview contemporary loss of glacier ice across the Southern Alps of New Zealand, (ii) analyse ice-marginal lake development since the 1980s, (iii) utilise modelled glacier ice thickness to suggest the position and size of future lakes, and (iv) employ a large-scale glacier evolution model to suggest the timing of future lake formation and future lake expansion rate. In recent decades, hundreds of Southern Alps glaciers have been lost and those remaining have fragmented both by separation of tributaries and by detachment of ablation zones. Glaciers with ice-contact margins in proglacial lakes (n > 0.1 km2 = 20 in 2020) have experienced the greatest terminus retreat and typically twice as negative mass balance compared to similar-sized land-terminating glaciers. Our analysis indicates a positive relationship between mean glacier mass balance and rate of lake growth (R2 = 0.34) and also with length of an ice-contact lake boundary (R2 = 0.44). We project sustained and relatively homogenous glacier volume loss for east-draining basins but in contrast a heterogeneous pattern of volume loss for west-draining basins. Our model results show that ice-marginal lakes will increase in combined size by ~150% towards 2050 and then decrease to 2100 as glaciers disconnect from them. Overall, our findings should inform (i) glacier evolution models into which ice-marginal lake effects need incorporating, (ii) studies of rapid landscape evolution and especially of meltwater and sediment delivery, and (iii) considerations of future meltwater supply and water quality