Relative importance of host environment, transmission potential and host phylogeny to the structure of parasite metacommunities

Identification of mechanisms that shape parasite community and metacommunity structures have important implications to host health, disease transmission, and the understanding of community assembly in general. Using a long-term dataset on parasites from desert rodents, we examined the relative contributions of host traits that represent important aspects of parasite environment, transmission probability between host species, and host phylogeny to the structure of a parasite metacommunity as well as for taxonomically restricted parasite metacommunities (coccidians, ectoparasites and helminths). This was done using a combination of metacommunity analysis and variance partitioning based on canonical correspondence analysis. Coccidian and ectoparasite metacommunities did not exhibit coherent structure. In contrast, helminths and the full parasite metacommunity had Clementsian and quasi-Clementsian structure, respectively, indicating that parasite species distributions for these metacommunities were compartmentalized along a dominant gradient. Variance decomposition indicated that characteristics associated with the host environment consistently explained more variation than did host traits associated with transmission opportunities or host phylogeny, indicating that the host environment is primary in shaping parasite species distributions among host species. Moreover, the importance of different types of host traits in structuring parasite metacommunities was consistent among taxonomic groups (i.e. full metacommunity, coccidians, and helminths) despite manifest differences in emergent structures (i.e. Clementsian, quasi-Clementsian, and random) that arose in response to variation in host environment. © 2014 The Authors

Experimental decoupling of canopy opening and debris addition on tropical gastropod populations and communities

a b s t r a c t Climate-induced disturbances such as hurricanes affect the structure and functioning of many ecosystems, especially those in the Caribbean Basin, where effects are well documented with regard to biodiversity and biogeochemical dynamics. Because climate change will likely alter the frequency or intensity of such storms, it is increasingly important to understand the mechanistic bases for ecosystem responses. However, this is particularly difficult to do in the absence of manipulative experiments that decouple confounded factors such as canopy opening and debris deposition. To address this issue, we exploited a replicated factorial design to experimentally distinguish the effects of canopy opening and debris deposition on population-and community-level characteristics of gastropods in the Luquillo Experimental Forest of Puerto Rico. Despite considerable spatial variation, abundances of all gastropods (combined) as well as abundances of each of 3 species (i.e., Alcadia striata, Platysuccinea portoricensis, and Polydontes acutangula) responded significantly to canopy opening while abundances of each of 2 species (i.e., Pl. portoricensis, and Po. acutangula) responded significantly to debris deposition within two years of experimental manipulation. In contrast, two species (i.e., Gaeotis nigrolineata and Nenia tridens) did not respond to any experimental manipulations in the short term. Moreover, species composition did not differ between pre-and post-manipulation periods, in part because of considerable variation among replicated blocks. In contrast, canopy removal consistently affected species richness, Shannon diversity, and rarity, while debris deposition consistently affected species richness and Shannon diversity. Neither treatment affected species dominance or evenness. Longer-term responses of the gastropod fauna were more complex. Although considerable interspecific heterogeneity characterized responses of the gastropod fauna, temporal variation in mean abundance for each of the three manipulative treatments was similar to that of the non-manipulated treatment when abundances were combined for all species. In contrast, temporal variation in each of the manipulative treatments was unrelated to temporal variation in the non-manipulated treatment for species richness, evenness, dominance, and rarity. Moreover, temporal variation in abundance generally differed between at least two of the manipulative treatments for most species and temporal variation in components of taxonomic biodiversity generally differed between manipulative treatments as well. Temporal variation in species composition was considerable and comparable for each of the four treatment combinations. Species composition within each treatment combination varied over time in ways unrelated to temporal variation in the other treatment combinations, including the reference treatment (i.e., no canopy trimming and no debris addition). Manipulated treatments were surrounded by large areas of intact forest, and tabonuco forest generally exhibits appreciable spatial and temporal variation. Natural spatiotemporal variation in the study system likely overwhelmed many of the effects of experimental manipulations on gastropod populations or communities via edge effects and recruitment of individuals from nearby less disturbed portions of the landscape

Reconciling biodiversity and carbon stock conservation in an Afrotropical forest landscape

Protecting aboveground carbon stocks in tropical forests is essential for mitigating global climate change and is assumed to simultaneously conserve biodiversity. Although the relationship between tree diversity and carbon stocks is generally positive, the relationship remains unclear for consumers or decomposers. We assessed this relationship for multiple trophic levels across the tree of life (10 organismal groups, 3 kingdoms) in lowland rainforests of the Congo Basin. Comparisons across regrowth and old-growth forests evinced the expected positive relationship for trees, but not for other organismal groups. Moreover, differences in species composition between forests increased with difference in carbon stock. These variable associations across the tree of life contradict the implicit assumption that maximum co-benefits to biodiversity are associated with conservation of forests with the highest carbon storage. Initiatives targeting climate change mitigation and biodiversity conservation should include both old-growth and regenerating forests to optimally benefit biodiversity and carbon storage

Tropical metacommunities along elevational gradients: effects of forest type and other environmental factors.

Elevational gradients provide a natural experiment for assessing the extent to which the structure of animal metacommunities is molded by biotic and abiotic characteristics that change gradually, or is molded by aspects of plant community composition and physiognomy that change in a more discrete fashion. We used a metacommunity framework to integrate species-specific responses to environmental gradients as an approach to detect emergent patterns at the mesoscale in the Luquillo Mountains of Puerto Rico. Elements of metacommunity structure (coherence, species turnover and range boundary clumping) formed the basis for distinguishing among random, checkerboard, Gleasonian, Clementsian, evenly spaced and nested patterns. Paired elevational transects (300-1000 m a.s.l.) were sampled at 50 m intervals to decouple underlying environmental mechanisms: a mixed forest transect reflected changes in abiotic and biotic conditions, including forest type (i.e. tabonuco, palo colorado and elfin forests), whereas another transect reflected changes in environmental conditions but not forest type, as its constituent plots were located within palm forest. Based on distributional data (presence versus absence of species), the mixed forest transect exhibited Clementsian structure, whereas the palm forest transect exhibited quasi-Gleasonian structure. In contrast, the distribution of modes in species abundance was random with respect to the latent environmental gradient in the mixed forest transect and clumped with respect to the latent environmental gradient in the palm forest transect. Such contrasts suggest that the environmental factors affecting abundance differed in form or type from those affecting distributional boundaries. Variation among elevational strata with respect to the first axis of correspondence from reciprocal averaging was highly correlated with elevation along each transect, even though axis scores were not correlated between mixed forest and palm forest transects. This suggests that the identity of the environmental characteristics, or the form of response by the fauna to those characteristics, differed between the two elevational transects. Despite the proximity of the transects, the patchy configuration of palm forest, and the pervasive distribution of the dominant palm species, the relative importance of abiotic variables and habitat in structuring gastropod metacommunities differed between transects, which is remarkable and attests to the sensitivity of metacommunity structure to environmental variation

Tropical metacommunities along elevational gradients: effects of forest type and other environmental factors.

Elevational gradients provide a natural experiment for assessing the extent to which the structure of animal metacommunities is molded by biotic and abiotic characteristics that change gradually, or is molded by aspects of plant community composition and physiognomy that change in a more discrete fashion. We used a metacommunity framework to integrate species-specifi c responses to environmental gradients as an approach to detect emergent patterns at the mesoscale in the Luquillo Mountains of Puerto Rico. Elements of metacommunity structure (coherence, species turnover and range boundary clumping) formed the basis for distinguishing among random, checkerboard, Gleasonian, Clementsian, evenly spaced and nested patterns. Paired elevational transects (300 -1000 m a.s.l.) were sampled at 50 m intervals to decouple underlying environmental mechanisms: a mixed forest transect refl ected changes in abiotic and biotic conditions, including forest type (i.e. tabonuco, palo colorado and elfi n forests), whereas another transect refl ected changes in environmental conditions but not forest type, as its constituent plots were located within palm forest. Based on distributional data (presence versus absence of species), the mixed forest transect exhibited Clementsian structure, whereas the palm forest transect exhibited quasi-Gleasonian structure. In contrast, the distribution of modes in species abundance was random with respect to the latent environmental gradient in the mixed forest transect and clumped with respect to the latent environmental gradient in the palm forest transect. Such contrasts suggest that the environmental factors aff ecting abundance diff ered in form or type from those aff ecting distributional boundaries. Variation among elevational strata with respect to the fi rst axis of correspondence from reciprocal averaging was highly correlated with elevation along each transect, even though axis scores were not correlated between mixed forest and palm forest transects. Th is suggests that the identity of the environmental characteristics, or the form of response by the fauna to those characteristics, diff ered between the two elevational transects. Despite the proximity of the transects, the patchy confi guration of palm forest, and the pervasive distribution of the dominant palm species, the relative importance of abiotic variables and habitat in structuring gastropod metacommunities diff ered between transects, which is remarkable and attests to the sensitivity of metacommunity structure to environmental variation

An OBSL1-Cul7Fbxw8 Ubiquitin Ligase Signaling Mechanism Regulates Golgi Morphology and Dendrite Patterning

The elaboration of dendrites in neurons requires secretory trafficking through the Golgi apparatus, but the mechanisms that govern Golgi function in neuronal morphogenesis in the brain have remained largely unexplored. Here, we report that the E3 ubiquitin ligase Cul7Fbxw8 localizes to the Golgi complex in mammalian brain neurons. Inhibition of Cul7Fbxw8 by independent approaches including Fbxw8 knockdown reveals that Cul7Fbxw8 is selectively required for the growth and elaboration of dendrites but not axons in primary neurons and in the developing rat cerebellum in vivo. Inhibition of Cul7Fbxw8 also dramatically impairs the morphology of the Golgi complex, leading to deficient secretory trafficking in neurons. Using an immunoprecipitation/mass spectrometry screening approach, we also uncover the cytoskeletal adaptor protein OBSL1 as a critical regulator of Cul7Fbxw8 in Golgi morphogenesis and dendrite elaboration. OBSL1 forms a physical complex with the scaffold protein Cul7 and thereby localizes Cul7 at the Golgi apparatus. Accordingly, OBSL1 is required for the morphogenesis of the Golgi apparatus and the elaboration of dendrites. Finally, we identify the Golgi protein Grasp65 as a novel and physiologically relevant substrate of Cul7Fbxw8 in the control of Golgi and dendrite morphogenesis in neurons. Collectively, these findings define a novel OBSL1-regulated Cul7Fbxw8 ubiquitin signaling mechanism that orchestrates the morphogenesis of the Golgi apparatus and patterning of dendrites, with fundamental implications for our understanding of brain development

The PREDICTS database: a global database of how local terrestrial biodiversity responds to human impacts

Biodiversity continues to decline in the face of increasing anthropogenic pressures such as habitat destruction, exploitation, pollution and introduction of alien species. Existing global databases of species’ threat status or population time series are dominated by charismatic species. The collation of datasets with broad taxonomic and biogeographic extents, and that support computation of a range of biodiversity indicators, is necessary to enable better understanding of historical declines and to project – and avert – future declines. We describe and assess a new database of more than 1.6 million samples from 78 countries representing over 28,000 species, collated from existing spatial comparisons of local-scale biodiversity exposed to different intensities and types of anthropogenic pressures, from terrestrial sites around the world. The database contains measurements taken in 208 (of 814) ecoregions, 13 (of 14) biomes, 25 (of 35) biodiversity hotspots and 16 (of 17) megadiverse countries. The database contains more than 1% of the total number of all species described, and more than 1% of the described species within many taxonomic groups – including flowering plants, gymnosperms, birds, mammals, reptiles, amphibians, beetles, lepidopterans and hymenopterans. The dataset, which is still being added to, is therefore already considerably larger and more representative than those used by previous quantitative models of biodiversity trends and responses. The database is being assembled as part of the PREDICTS project (Projecting Responses of Ecological Diversity In Changing Terrestrial Systems – www.predicts.org.uk). We make site-level summary data available alongside this article. The full database will be publicly available in 2015

Nycteribiidae

Number of male and female nycteribiid bat flies collected from Paraguayan bat

Data from: Sex-based population structure of ectoparasites from Neotropical bats

The structure and composition of populations may be molded by multiple evolutionary and ecological mechanisms, with natural selection affecting sex ratios, as well as the distributions of each sex throughout the environment. To address sex-based aspects of population structure, I evaluated sex ratios, co-occurrence of the sexes, correlations of abundance of the sexes, and dispersion of individuals of each sex for each of 34 host-ectoparasite associations from Paraguayan bats. Of the 34 host-ectoparasite associations, 23 exhibited positive co-occurrence, 27 exhibited positive correlation of abundances, 4 exhibited male sex bias, 1 exhibited female sex bias, 27 had clumped distributions of males, and 26 had clumped distributions of females. No associations exhibited negative co-occurrence, negative correlation of abundance, or hyper-dispersed males or females. There was no evidence for sexual segregation, sex-based niche partitioning, or intrasexual selection in any host-ectoparasite association. Previously proposed mechanisms (e.g. pre-partum sex bias, local mate competition, or mortality from host grooming) fail to explain observed patterns of sex bias. For ectoparasites of hosts that occupy permanent roost sites, sex-specific behaviour related to reproduction may make females more susceptible to off-host predation and less likely to be present in samples from bats captured away from the roost