14 research outputs found

    Role of the BAHD1 Chromatin-Repressive Complex in Placental Development and Regulation of Steroid Metabolism.

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    BAHD1 is a vertebrate protein that promotes heterochromatin formation and gene repression in association with several epigenetic regulators. However, its physiological roles remain unknown. Here, we demonstrate that ablation of the Bahd1 gene results in hypocholesterolemia, hypoglycemia and decreased body fat in mice. It also causes placental growth restriction with a drop of trophoblast glycogen cells, a reduction of fetal weight and a high neonatal mortality rate. By intersecting transcriptome data from murine Bahd1 knockout (KO) placentas at stages E16.5 and E18.5 of gestation, Bahd1-KO embryonic fibroblasts, and human cells stably expressing BAHD1, we also show that changes in BAHD1 levels alter expression of steroid/lipid metabolism genes. Biochemical analysis of the BAHD1-associated multiprotein complex identifies MIER proteins as novel partners of BAHD1 and suggests that BAHD1-MIER interaction forms a hub for histone deacetylases and methyltransferases, chromatin readers and transcription factors. We further show that overexpression of BAHD1 leads to an increase of MIER1 enrichment on the inactive X chromosome (Xi). In addition, BAHD1 and MIER1/3 repress expression of the steroid hormone receptor genes ESR1 and PGR, both playing important roles in placental development and energy metabolism. Moreover, modulation of BAHD1 expression in HEK293 cells triggers epigenetic changes at the ESR1 locus. Together, these results identify BAHD1 as a core component of a chromatin-repressive complex regulating placental morphogenesis and body fat storage and suggest that its dysfunction may contribute to several human diseases

    Caractérisation de protéines nucléaires ciblées par la bactérie pathogÚne Listeria monocytogenes

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    Listeria monocytogenes is an optional intracellular pathogen responsible for a severe foodborne infection called listeriosis. The study of the cellular infection process of this bacterium has shed light on various mechanisms involved in host-pathogen interactions and in the functioning of the eukaryotic cell. In particular, L. monocytogenes has emerged as one of the pioneering models in the discovery of microbial targeting of chromatin and nuclear regulators. The study of a virulence factor of L. monocytogenes, LntA, allowed the identification of one of these regulators : BAHD1. By recruiting proteins involved in the formation of heterochromatin, such as HDAC1/2 and HP1, BAHD1 stimulates the formation of a compact chromatin with a repressive effect. When epithelial cells are infected with L. monocytogenes, BAHD1 suppresses the immune response stimulated by interferons, a function inhibited by LntA. Since BAHD1 is still under-researched, the first objective for my thesis was to further characterize this epigenetic regulator. In addition, preliminary data suggested that a recently discovered virulence factor of Listeria, InlP, had the potential to be, like LntA, a nucleomodulin. My second objective was to explore this hypothesis.The results of my first axis show that BAHD1 interacts with MIER1 and that this interaction is crucial for the association of BAHD1 with HDAC1/2. We also report that BAHD1 modifies chromatin by changing histone methylation and acetylation, as well as DNA methylation, at a target gene, ESR1. These results allow us to propose that BAHD1 form, with MIER1, a scaffold assembling a new chromatin remodeling complex associated with HDAC1/2 : the BAHD1 complex. We then studied the role of BAHD1 in an organ targeted by Listeria, the brain. Our results indicate that a total deficiency in BAHD1 alters the overall transcriptome of this organ in mice. Most of the overexpressed genes are involved in nervous system functions, metabolism and neurological disorders. The predominantly downregulated genes are involved in innate immunity pathways, including interferon response genes. In addition, a haplodeficiency in Bahd1 causes behavioral problems. Compared to Bahd1+/+ mice, Bahd1+/- mice suffer from increased anxiety and changes in acoustic startle reflex. These results suggest that deregulation of BAHD1, through environmental or infectious stimuli, may have neuro-pathological effects.The second axis of my thesis focused on the study of InlP interactions with host nuclear proteins, identified by a double-hybrid screen. First, we show that InlP is an atypical internalin, with leucine-rich repeats characterized by an LPX2 motif. We then identify two nuclear proteins targeted by InlP: the splicing factor and tumor suppressor RBM5 and the corepressor RERE. When InlP is produced ectopically in human cells, it is localized in the nucleus, where it alters the formation of nuclear bodies enriched in RERE. In RBM5-overexpressing cells, InlP inhibits the pro-apoptotic effect of RBM5 and stimulates the formation of dense nuclear bodies associated with RBM5. These results suggest that InlP is a nucleomodulin acting on the assembly and disassembly of target protein storage compartments involved in the synthesis and splicing of host RNAs.This work opens perspectives in the understanding of host-pathogen interactions and in a better knowledge of patho-epigenetic mechanisms, as well as in cell biology and the understanding of membraneless nuclear organelles dynamics.Listeria monocytogenes est un pathogĂšne intracellulaire facultatif responsable d’une infection sĂ©vĂšre d’origine alimentaire, la listĂ©riose. L’étude du processus d’infection cellulaire de cette bactĂ©rie a permis d’élucider divers mĂ©canismes impliquĂ©s dans les interactions hĂŽte-pathogĂšne et dans le fonctionnement de la cellule eucaryote. En particulier, L. monocytogenes a Ă©tĂ© l’un des modĂšles pionniers dans la dĂ©couverte du ciblage de la chromatine et de rĂ©gulateurs nuclĂ©aires par des microbes. L’étude d’un facteur de virulence de L. monocytogenes, LntA, a permis l’identification d’un de ces rĂ©gulateurs : BAHD1. En recrutant des protĂ©ines impliquĂ©es dans la formation de l’hĂ©tĂ©rochromatine, telles HDAC1/2 et HP1, BAHD1 stimule la formation d’une chromatine compacte Ă  effet rĂ©pressif. Lors d’une infection de cellules Ă©pithĂ©liales par L. monocytogenes, BAHD1 rĂ©prime la rĂ©ponse immunitaire stimulĂ©e par les interfĂ©rons, une fonction inhibĂ©e par LntA. BAHD1 demeurant peu Ă©tudiĂ©e, mon doctorat a eu pour premier objectif de poursuivre la caractĂ©risation de ce rĂ©gulateur Ă©pigĂ©nĂ©tique. Par ailleurs, des donnĂ©es prĂ©liminaires suggĂ©raient qu’un facteur de virulence de Listeria rĂ©cemment dĂ©couvert, InlP, avait la potentialitĂ© d’ĂȘtre, comme LntA, une nuclĂ©omoduline. Mon deuxiĂšme objectif a Ă©tĂ© d’explorer cette hypothĂšse.Les rĂ©sultats de mon premier axe montrent que BAHD1 interagit avec MIER1 et que cette interaction est cruciale pour l’association de BAHD1 aux HDAC1/2. Nous reportons Ă©galement que BAHD1 modifie la chromatine en changement la mĂ©thylation et l’acĂ©tylation des histones, ainsi que la mĂ©thylation de l’ADN, au niveau d’un gĂšne cible, ESR1. Ces rĂ©sultats nous permettent de proposer que BAHD1 forme, avec MIER1, un Ă©chafaudage assemblant un nouveau complexe de remodelage de la chromatine associĂ© aux HDAC1/2 : le complexe BAHD1. Nous avons ensuite Ă©tudiĂ© un rĂŽle de BAHD1 dans un organe ciblĂ© par la Listeria, le cerveau. Nos rĂ©sultats indiquent qu’une dĂ©ficience totale en BAHD1 altĂšre le transcriptome global de cet organe chez la souris. Les gĂšnes majoritairement surexprimĂ©s sont impliquĂ©s dans des fonctions du systĂšme nerveux, le mĂ©tabolisme et des troubles neurologiques. Les gĂšnes majoritairement sous-exprimĂ©s sont impliquĂ©s dans des voies de l’immunitĂ© innĂ©e, dont des gĂšnes de rĂ©ponses aux interfĂ©rons. Par ailleurs, une haplo-dĂ©ficience en Bahd1 provoque des troubles comportementaux. En comparaison des souris Bahd1+/+, les souris Bahd1+/- souffrent d’une anxiĂ©tĂ© accrue et d’altĂ©rations du rĂ©flex de sursaut acoustique. Ces rĂ©sultats suggĂšrent qu’une dĂ©rĂ©gulation de BAHD1, par des stimuli de l’environnement ou par des stimuli infectieux, pourrait avoir des effets neuro-pathologiques.Le second axe de ma thĂšse concernait l’étude des interactions d’InlP avec des protĂ©ines nuclĂ©aires de l’hĂŽte, identifiĂ©es par un crible double-hybride. Nous montrons d’abord qu’InlP est une internaline atypique, avec des rĂ©pĂ©titions riches en leucine caractĂ©risĂ©es par un motif LPX2. Nous identifions, ensuite, deux protĂ©ines nuclĂ©aires ciblĂ©es par InlP : le facteur d’épissage et suppresseur de tumeur RBM5 et le corĂ©presseur RERE. Quand InlP est produite de façon ectopique dans les cellules humaines, elle se localise dans le noyau, oĂč elle altĂšre la formation de corps nuclĂ©aires enrichis en RERE. Dans des cellules sur-exprimant RBM5, InlP inhibe l’effet pro-apoptotique de RBM5 et stimule la formation de corps nuclĂ©aires denses associĂ©s Ă  RBM5. Ces rĂ©sultats suggĂšrent qu’InlP est une nuclĂ©omoduline agissant sur la l’assemblage et le dĂ©sassemblage de compartiments de stockage de protĂ©ines cibles impliquĂ©es dans la synthĂšse et l’épissage d’ARNs de l’hĂŽte.Ce travail ouvrent des perspectives dans la comprĂ©hension des interactions hĂŽte-pathogĂšne et dans une meilleure connaissance des mĂ©canismes patho-Ă©pigĂ©nĂ©tiques, ainsi qu’en biologie cellulaire, dans la comprĂ©hension de la dynamique des organites nuclĂ©aires sans membrane

    Characterization of nuclear proteins targeted by the pathogenic bacterium Listeria monocytogenes

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    Listeria monocytogenes est un pathogĂšne intracellulaire facultatif responsable d’une infection sĂ©vĂšre d’origine alimentaire, la listĂ©riose. L’étude du processus d’infection cellulaire de cette bactĂ©rie a permis d’élucider divers mĂ©canismes impliquĂ©s dans les interactions hĂŽte-pathogĂšne et dans le fonctionnement de la cellule eucaryote. En particulier, L. monocytogenes a Ă©tĂ© l’un des modĂšles pionniers dans la dĂ©couverte du ciblage de la chromatine et de rĂ©gulateurs nuclĂ©aires par des microbes. L’étude d’un facteur de virulence de L. monocytogenes, LntA, a permis l’identification d’un de ces rĂ©gulateurs : BAHD1. En recrutant des protĂ©ines impliquĂ©es dans la formation de l’hĂ©tĂ©rochromatine, telles HDAC1/2 et HP1, BAHD1 stimule la formation d’une chromatine compacte Ă  effet rĂ©pressif. Lors d’une infection de cellules Ă©pithĂ©liales par L. monocytogenes, BAHD1 rĂ©prime la rĂ©ponse immunitaire stimulĂ©e par les interfĂ©rons, une fonction inhibĂ©e par LntA. BAHD1 demeurant peu Ă©tudiĂ©e, mon doctorat a eu pour premier objectif de poursuivre la caractĂ©risation de ce rĂ©gulateur Ă©pigĂ©nĂ©tique. Par ailleurs, des donnĂ©es prĂ©liminaires suggĂ©raient qu’un facteur de virulence de Listeria rĂ©cemment dĂ©couvert, InlP, avait la potentialitĂ© d’ĂȘtre, comme LntA, une nuclĂ©omoduline. Mon deuxiĂšme objectif a Ă©tĂ© d’explorer cette hypothĂšse.Les rĂ©sultats de mon premier axe montrent que BAHD1 interagit avec MIER1 et que cette interaction est cruciale pour l’association de BAHD1 aux HDAC1/2. Nous reportons Ă©galement que BAHD1 modifie la chromatine en changement la mĂ©thylation et l’acĂ©tylation des histones, ainsi que la mĂ©thylation de l’ADN, au niveau d’un gĂšne cible, ESR1. Ces rĂ©sultats nous permettent de proposer que BAHD1 forme, avec MIER1, un Ă©chafaudage assemblant un nouveau complexe de remodelage de la chromatine associĂ© aux HDAC1/2 : le complexe BAHD1. Nous avons ensuite Ă©tudiĂ© un rĂŽle de BAHD1 dans un organe ciblĂ© par la Listeria, le cerveau. Nos rĂ©sultats indiquent qu’une dĂ©ficience totale en BAHD1 altĂšre le transcriptome global de cet organe chez la souris. Les gĂšnes majoritairement surexprimĂ©s sont impliquĂ©s dans des fonctions du systĂšme nerveux, le mĂ©tabolisme et des troubles neurologiques. Les gĂšnes majoritairement sous-exprimĂ©s sont impliquĂ©s dans des voies de l’immunitĂ© innĂ©e, dont des gĂšnes de rĂ©ponses aux interfĂ©rons. Par ailleurs, une haplo-dĂ©ficience en Bahd1 provoque des troubles comportementaux. En comparaison des souris Bahd1+/+, les souris Bahd1+/- souffrent d’une anxiĂ©tĂ© accrue et d’altĂ©rations du rĂ©flex de sursaut acoustique. Ces rĂ©sultats suggĂšrent qu’une dĂ©rĂ©gulation de BAHD1, par des stimuli de l’environnement ou par des stimuli infectieux, pourrait avoir des effets neuro-pathologiques.Le second axe de ma thĂšse concernait l’étude des interactions d’InlP avec des protĂ©ines nuclĂ©aires de l’hĂŽte, identifiĂ©es par un crible double-hybride. Nous montrons d’abord qu’InlP est une internaline atypique, avec des rĂ©pĂ©titions riches en leucine caractĂ©risĂ©es par un motif LPX2. Nous identifions, ensuite, deux protĂ©ines nuclĂ©aires ciblĂ©es par InlP : le facteur d’épissage et suppresseur de tumeur RBM5 et le corĂ©presseur RERE. Quand InlP est produite de façon ectopique dans les cellules humaines, elle se localise dans le noyau, oĂč elle altĂšre la formation de corps nuclĂ©aires enrichis en RERE. Dans des cellules sur-exprimant RBM5, InlP inhibe l’effet pro-apoptotique de RBM5 et stimule la formation de corps nuclĂ©aires denses associĂ©s Ă  RBM5. Ces rĂ©sultats suggĂšrent qu’InlP est une nuclĂ©omoduline agissant sur la l’assemblage et le dĂ©sassemblage de compartiments de stockage de protĂ©ines cibles impliquĂ©es dans la synthĂšse et l’épissage d’ARNs de l’hĂŽte.Ce travail ouvrent des perspectives dans la comprĂ©hension des interactions hĂŽte-pathogĂšne et dans une meilleure connaissance des mĂ©canismes patho-Ă©pigĂ©nĂ©tiques, ainsi qu’en biologie cellulaire, dans la comprĂ©hension de la dynamique des organites nuclĂ©aires sans membrane.Listeria monocytogenes is an optional intracellular pathogen responsible for a severe foodborne infection called listeriosis. The study of the cellular infection process of this bacterium has shed light on various mechanisms involved in host-pathogen interactions and in the functioning of the eukaryotic cell. In particular, L. monocytogenes has emerged as one of the pioneering models in the discovery of microbial targeting of chromatin and nuclear regulators. The study of a virulence factor of L. monocytogenes, LntA, allowed the identification of one of these regulators : BAHD1. By recruiting proteins involved in the formation of heterochromatin, such as HDAC1/2 and HP1, BAHD1 stimulates the formation of a compact chromatin with a repressive effect. When epithelial cells are infected with L. monocytogenes, BAHD1 suppresses the immune response stimulated by interferons, a function inhibited by LntA. Since BAHD1 is still under-researched, the first objective for my thesis was to further characterize this epigenetic regulator. In addition, preliminary data suggested that a recently discovered virulence factor of Listeria, InlP, had the potential to be, like LntA, a nucleomodulin. My second objective was to explore this hypothesis.The results of my first axis show that BAHD1 interacts with MIER1 and that this interaction is crucial for the association of BAHD1 with HDAC1/2. We also report that BAHD1 modifies chromatin by changing histone methylation and acetylation, as well as DNA methylation, at a target gene, ESR1. These results allow us to propose that BAHD1 form, with MIER1, a scaffold assembling a new chromatin remodeling complex associated with HDAC1/2 : the BAHD1 complex. We then studied the role of BAHD1 in an organ targeted by Listeria, the brain. Our results indicate that a total deficiency in BAHD1 alters the overall transcriptome of this organ in mice. Most of the overexpressed genes are involved in nervous system functions, metabolism and neurological disorders. The predominantly downregulated genes are involved in innate immunity pathways, including interferon response genes. In addition, a haplodeficiency in Bahd1 causes behavioral problems. Compared to Bahd1+/+ mice, Bahd1+/- mice suffer from increased anxiety and changes in acoustic startle reflex. These results suggest that deregulation of BAHD1, through environmental or infectious stimuli, may have neuro-pathological effects.The second axis of my thesis focused on the study of InlP interactions with host nuclear proteins, identified by a double-hybrid screen. First, we show that InlP is an atypical internalin, with leucine-rich repeats characterized by an LPX2 motif. We then identify two nuclear proteins targeted by InlP: the splicing factor and tumor suppressor RBM5 and the corepressor RERE. When InlP is produced ectopically in human cells, it is localized in the nucleus, where it alters the formation of nuclear bodies enriched in RERE. In RBM5-overexpressing cells, InlP inhibits the pro-apoptotic effect of RBM5 and stimulates the formation of dense nuclear bodies associated with RBM5. These results suggest that InlP is a nucleomodulin acting on the assembly and disassembly of target protein storage compartments involved in the synthesis and splicing of host RNAs.This work opens perspectives in the understanding of host-pathogen interactions and in a better knowledge of patho-epigenetic mechanisms, as well as in cell biology and the understanding of membraneless nuclear organelles dynamics

    Bacterial Factors Targeting the Nucleus: The Growing Family of Nucleomodulins

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    Pathogenic bacteria secrete a variety of proteins that manipulate host cell function by targeting components of the plasma membrane, cytosol, or organelles. In the last decade, several studies identified bacterial factors acting within the nucleus on gene expression or other nuclear processes, which has led to the emergence of a new family of effectors called “nucleomodulins”. In human and animal pathogens, Listeria monocytogenes for Gram-positive bacteria and Anaplasma phagocytophilum, Ehrlichia chaffeensis, Chlamydia trachomatis, Legionella pneumophila, Shigella flexneri, and Escherichia coli for Gram-negative bacteria, have led to pioneering discoveries. In this review, we present these paradigms and detail various mechanisms and core elements (e.g., DNA, histones, epigenetic regulators, transcription or splicing factors, signaling proteins) targeted by nucleomodulins. We particularly focus on nucleomodulins interacting with epifactors, such as LntA of Listeria and ankyrin repeat- or tandem repeat-containing effectors of Rickettsiales, and nucleomodulins from various bacterial species acting as post-translational modification enzymes. The study of bacterial nucleomodulins not only generates important knowledge about the control of host responses by microbes but also creates new tools to decipher the dynamic regulations that occur in the nucleus. This research also has potential applications in the field of biotechnology. Finally, this raises questions about the epigenetic effects of infectious diseases

    A bacterial virulence factor interacts with the splicing factor RBM5 and stimulates formation of nuclear RBM5 granules

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    International audienceAbstract L. monocytogenes causes listeriosis, a foodborne disease that is particularly dangerous for immunocompromised individuals and fetuses. Several virulence factors of this bacterial pathogen belong to a family of leucine-rich repeat (LRR)-containing proteins called internalins. Among these, InlP is known for its role in placental infection. We report here a function of InlP in mammalian cell nucleus organization. We demonstrate that bacteria do not produce InlP under in vitro culture conditions. When ectopically expressed in human cells, InlP translocates into the nucleus and changes the morphology of nuclear speckles, which are membrane-less organelles storing splicing factors. Using yeast two-hybrid screen, immunoprecipitation and pull-down experiments, we identify the tumor suppressor and splicing factor RBM5 as a major nuclear target of InlP. InlP inhibits RBM5-induced cell death and stimulate the formation of RBM5-induced nuclear granules, where the SC35 speckle protein redistributes. Taken together, these results suggest that InlP acts as a nucleomodulin controlling compartmentalization and function of RBM5 in the nucleus and that L. monocytogenes has developed a mechanism to target the host cell splicing machinery

    BAHD1 haploinsufficiency results in anxiety-like phenotypes in male mice

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    International audienceBAHD1 is a heterochomatinization factor recently described as a component of a multiprotein complex associated with histone deacetylases HDAC1/2. The physiological and patho-physiological functions of BAHD1 are not yet well characterized. Here, we examined the consequences of BAHD1 deficiency in the brains of male mice. While Bahd1 knockout mice had no detectable defects in brain anatomy, RNA sequencing profiling revealed about 2500 deregulated genes in Bahd1-/- brains compared to Bahd1+/+ brains. A majority of these genes were involved in nervous system development and function, behavior, metabolism and immunity. Exploration of the Allen Brain Atlas and Dropviz databases, assessing gene expression in the brain, revealed that expression of the Bahd1 gene was limited to a few territories and cell subtypes, particularly in the hippocampal formation, the isocortex and the olfactory regions. The effect of partial BAHD1 deficiency on behavior was then evaluated on Bahd1 heterozygous male mice, which have no lethal or metabolic phenotypes. Bahd1+/- mice showed anxiety-like behavior and reduced prepulse inhibition (PPI) of the startle response. Altogether, these results suggest that BAHD1 plays a role in chromatin-dependent gene regulation in a subset of brain cells and support recent evidence linking genetic alteration of BAHD1 to psychiatric disorders in a human patient

    <i>Bahd1</i>-knockout mice display decreased weight and fat mass and lower cholesterol, glucose and leptin levels.

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    <p><b>A-B.</b> Plasma levels of glucose (A) or of total cholesterol, HDL and LDL (B) in <i>Bahd1</i> wild-type (WT) and -heterozygous (HET) male (top) or female (bottom) mice, 10-week-old fed a chow diet (CD) or 30-week-old fed 14 weeks CD followed by 16 weeks HFHC (n = 8-10/group. <b>C.</b> Representative macroscopic images of <i>Bahd1</i>-WT and -knockout (KO) mice at 6 weeks and 9 months. <b>D.</b> Body length at 9 months. <b>E</b>. Body weight curve of <i>Bahd1-</i>WT and KO mice between the ages of 7 to 17 months (n = 5/group). <b>F.</b> Quantification of body fat mass and lean by QNMR analysis on 15 month-old animals (n = 4/group). <b>G.</b> Plasma levels of glucose, total cholesterol, HDL, insulin, leptin and adiponectin in 16-hours fasted 7-month-old WT and KO mice fed a normal diet (n = 4/group). <b>H.</b> Plasma levels of the same parameters in the same animals one year later (18 month-old). All data are expressed as the mean ± SE (* <i>P</i><0.05; ** <i>P</i><0.01; *** <i>P</i>< 0.005).</p

    Depletion or overexpression of BAHD1 in HEK293 cells induce epigenetic changes at <i>ESR1</i>.

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    <p><b>A. BAHD1 and MIER1/3 repress <i>ESR1</i> and <i>PGR</i></b>. HEK293-FT cells were transfected for 72 h with control or BAHD1, MIER1 or MIER3 siRNA. The levels of <i>BAHD1</i>, <i>MIER1</i>, <i>MIER3</i>, <i>ESR1</i>, <i>PGR</i> and <i>AR</i> transcripts were quantified by RT-qPCR. Data are expressed as mean ± SD (* <i>P</i><0.05; ** <i>P</i><0.005). <b>B.</b> Schematic representation of the proximal region of <i>ESR1</i> in chr6 of the human genome. <b>C.</b> BAHD1 binds the proximal region of <i>ESR1</i>. Amounts of DNA precipitated with BAHD1-TAP E1 eluates (see <a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1005898#pgen.1005898.g004" target="_blank">Fig 4</a>) or with control TAP or inputs were quantified using qPCR with the primer sets indicated in B. The amount of DNA purified with BAHD1 was normalized to the amount precipitated in the control TAP, and to the <i>GAPDH</i> locus. Data are averages ± SD of qPCR triplicates, and representative of 2 independent TAP experiments. <b>D.</b> BAHD1 depletion alters the patterns of H3K9 acetylation and methylation at the <i>ESR1</i> locus. HEK293-FT cells were transfected with control or BAHD1 siRNA and enrichment of H3K9ac, H3K9me2 and H3K9me3 relative to IgG control at <i>ESR1</i> and <i>GAPDH</i> regions were estimated by ChIP-qPCR in BAHD1-depleted and control cells. The y-axis shows the relative fold change of ChIP enrichment in cells with BAHD1 siRNA over cells with control siRNA in Log2 ratios. Data are averages ± SD of two ChIP per antibody and representative of three biological replicates (see <a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1005898#pgen.1005898.s007" target="_blank">S6 Fig</a>). <b>E.</b> Overexpression of BAHD1 induces widespread DNA methylation at the <i>ESR1</i> locus. Bisulfite-modified genomic DNA of control HEK-CT cells and isogenic HEK-BAHD1 cells overexpressing BAHD1 were sequenced and analyzed for their DNA methylation status, as described in Libertini et al. (2015) [<a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1005898#pgen.1005898.ref014" target="_blank">14</a>]. 300bp-regions with reproducible gain of methylation in HEK-BAHD1 compared to HEK-CT DNA in two BS-seq replicates (i.e hypermethylated BAHD1-DMRs) were binned into 0.5Mb windows highlighting clusters of hyper-DMRs (shown as red bars). Contiguous clusters define BAHD1-associated domains (“Hyper-BADs”, shown as black boxes). BAHD1-DMRs are represented by black vertical lines in the track “hyper-DMRs”. Three hypermethylated BADs of chr6 are shown on the top, with the position of <i>ESR1</i> indicated by an arrow. A 1 Mb region encompassing the <i>Esr1</i> locus is magnified below, showing the high density of hypermethylated BAHD1-DMRs on the whole locus. CpG islands are indicated in green. The position of transcripts is shown below.</p

    BAHD1 plays a role in fetal and placental growth.

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    <p><b>A.</b> Representative images of <i>Bahd1</i><sup>+/+</sup> and <i>Bahd1</i><sup>−/−</sup> fetuses at E18.5 and quantification of fetus weight (on the right, * <i>P</i> < 0.05). <b>B.</b> Representative images of <i>Bahd1</i><sup>−/−</sup> and <i>Bahd1</i><sup>+/+</sup> placentas at E18.5 and E16.5. Scale bar, 200 mm. Quantification of areas and circumferences of E18.5 placentas are shown on the right (<i>Bahd1</i><sup>+/+</sup>, n = 4; <i>Bahd1</i><sup>+/-</sup>, n = 11; <i>Bahd1</i><sup>-/-</sup>; n = 7). Data are expressed as mean ± SD (*<i>P</i> < 0.05). <b>C.</b> Histological analysis of <i>Bahd1</i><sup>−/−</sup> and <i>Bahd1</i><sup>+/+</sup> placentas at E18.5 and E16.5. Placentas were collected, fixed and subjected to hematoxylin and eosin (HE) staining. A representative image is shown. Scale bar: 1 mm. <b>D.</b> Periodic acid-Shiff (PAS) staining of the same E16.5 placentas as in C, at three different scales. Scale bar, 1 mm (top), 250ÎŒm (bottom), 60 ÎŒm (squared region). High magnification of vacuolated glycogen cells GCs (arrowheads) in the junctional zone is shown in squared regions. Ms, mesometrial triangle; Db: decidua basalis; Jz junctional zone; Lz, labyrinthine zone.</p
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