The evolution of Greek fauna since classical times

This article concerns the Greek fauna of classical and late antiquity and changes up to the present day. The main sources for the fauna of antiquity are historical, geographical and zoological texts, as well as descriptions from travellers who visited Greece. The study of the texts of classical and late antiquity was based on the following classical authors: Xenophon, Aristotle, Aristophanes Byzantios, Pliny, Dio Chrysostom, Plutarch, Pausanias and Aelian. Some species that were present in the Greek fauna of classical and late antiquity, such as the lion and the leopard, are today extinct in Greece, whereas some other species that are now common, such as the cat, the chicken and the peacock, were introduced about that time or a little earlier from other regions. Some other species that are also common today, such as the wild rabbit and the pheasant, were unknown at that time, as they appeared later in Greece from other areas

The evolution of Greek fauna since classical times

This article concerns the Greek fauna of classical and late antiquity and changes up to the present day. The main sources for the fauna of antiquity are historical, geographical and zoological texts, as well as descriptions from travellers who visited Greece. The study of the texts of classical and late antiquity was based on the following classical authors: Xenophon, Aristotle, Aristophanes Byzantios, Pliny, Dio Chrysostom, Plutarch, Pausanias and Aelian. Some species that were present in the Greek fauna of classical and late antiquity, such as the lion and the leopard, are today extinct in Greece, whereas some other species that are now common, such as the cat, the chicken and the peacock, were introduced about that time or a little earlier from other regions. Some other species that are also common today, such as the wild rabbit and the pheasant, were unknown at that time, as they appeared later in Greece from other areas

Patterns of morphometric variation in the alpine newt (Mesotriton alpestris) at the southern limit of its distribution: environmental correlates

We applied multivariate analyses to an array of body measures of alpine newt specimens derived from 11 local populations in Greece to describe, analyse and detect patterns and putative causes of within-population and among-population morphometric variation. The observed morphometric variation was partitioned into several independently varying aspects of the external phenotype, frequently following variation patterns in different environmental factors. The size and features of the aquatic habitat were found to affect body size, while altitude was found to affect head-shape variation in both sexes. At the intra-population level, variation in generalized body size and shape was found to be significantly lower when competitive newt species were present in the habitat, indicating stabilizing selection towards a decrease in inter-specific competition. No clear discrimination on body size and shape proportions was detected between the two genetic lineages examined, implying ecogenetic or environmentally induced variation rather than phylogeny

Phylogeny and biogeography of the alpine newt Mesotriton alpestris (Salamandridae, Caudata), inferred from mtDNA sequences

In this paper, we performed phylogenetic analyses of Mesotriton alpestris populations from the entire range of species distribution, using fragments of two mtDNA genes, cytochrome b (309 bp) and 16S rRNA (similar to 500 bp). Sequence diversity patterns and phylogenetic analyses reveal the existence of a relict lineage (Clade A) of late Miocene origin, comprising populations from south-eastern Serbia. This lineage is proposed to be ancestor to a western and an eastern lineage, which diverged during the middle Pliocene. The western lineage is further divided in two clades (Clades B, C) of middle Pliocene origin that represent populations from Italy (B) and populations from central Europe and Iberia (C). Further subdivision, dated back to the middle-late Pliocene, was found within the eastern lineage, representing southern (Clade D) and central-northern (Clade E) Balkan populations, respectively. Extensive sequence divergence, implying greater isolation in multiple refugia, is found within eastern clades, while the western clades seem to have been involved in the colonization of central, western and north-eastern Europe from a hypothetical refugium in central Europe. The extent of divergence does not support the current taxonomy indicating cryptic speciation in the Balkans, while paedomorphic lineages were found to have been evolved during early-middle Pleistocene probably as a response to the ongoing dramatic climatic oscillations. (c) 2007 Elsevier Inc. All rights reserved.nul

Cracking the nut: Geographical adjacency of sister taxa supports vicariance in a polytomic salamander clade in the absence of node support

Veith M, Lipscher E, Oz M, et al. Cracking the nut: Geographical adjacency of sister taxa supports vicariance in a polytomic salamander clade in the absence of node support. Molecular Phylogenetics and Evolution. 2008;47(3):916-931.The urodelan genus Lyciasalamandra, which inhabits a relatively small area along the southern Turkish coast and some Aegean islands, provides an outstanding example of a diverse but phylogenetically unresolved taxon. Molecular trees contain a single basal polytomy that could be either soft or hard. We here use the information of nuclear (allozymes) and mitochondrial (fractions of the 16S rRNA and ATPase genes) datasets in combination with area relationships of lineages to resolve the phylogenetic relationships among Lyciasalamandra species in the absence of sufficient node support. We can show that neither random processes nor introgressive hybridization can be invoked to explain that the majority of pairs of sister taxa form geographically adjacent units and interpret that this pattern has been shaped by vicariant events. Topology discordance between mitochondrial and nuclear trees mainly refers to an affiliation of L. helverseni, a taxon restricted to the Karpathos archipelago, to the western-most and geographically proximate mainland taxon in the nuclear tree, while in the organelle tree it turns out to be the sister lineage to the geographically most distant eastern clade. As this discordance cannot be explained by long-branch attraction in either dataset we suppose that oversea dispersal may have accounted for a second colonization of the Karpathos archipelago. It may have initiated introgression and selection driven manifestation of alien eastern mitochondrial genomes on a western nuclear background. Our approach of testing for area relationships of sister taxa against the null hypothesis of random distribution of these taxa seems to be especially helpful in phylogenetic studies where traditional measures of phylogenetic branch support fail to reject the null hypothesis of a hard polytomy. (C) 2007 Elsevier Inc. All rights reserved

LBNL-58663 A Molecular Assessment of Phylogenetic Relationships and Lineage Diversification Within the Family Salamandridae (Amphibia, Caudata) A Molecular Assessment of Phylogenetic Relationships and Lineage Diversification Within the Family Salamandrida

Abstract Phylogenetic relationships among species of the salamander family Salamandridae are investigated using nearly 3000 nucleotide bases of newly reported mitochondrial DNA sequence data from the mtDNA genic region spanning the genes tRNA Leu -COI. This study uses nearly comprehensive species-level sampling to provide the first complete phylogeny for the Salamandridae. Deep phylogenetic relationships among the three most divergent lineages in the family -Salamandrina terdigitata, a clade comprising the "True" salamanders, and a clade comprising all newts except S. terdigitata -are difficult to resolve

The phylogeny of Mediterranean tortoises and their close relatives based on complete mitochondrial genome sequences from museum specimens

As part of an ongoing project to generate a mitochondrial database for terrestrial tortoises based on museum specimens, the complete mitochondrial genome sequences of 10 species and a ~;14 kb sequence from an eleventh species are reported. The sampling of the present study emphasizes Mediterranean tortoises (genus Testudo and their close relatives). Our new sequences are aligned, along with those of two testudinoid turtles from GenBank, Chrysemys picta and Mauremys reevesii, yielding an alignment of 14,858 positions, of which 3,238 are parsimony informative. We develop a phylogenetic taxonomy for Testudo and related species based on well-supported, diagnosable clades. Several well-supported nodes are recovered, including the monophyly of a restricted Testudo, T. kleinmanni + T. marginata (the Chersus clade), and the placement of the enigmatic African pancake tortoise (Malacochersus tornieri) within the predominantly Palearctic greater Testudo group (Testudona tax. nov.). Despite the large amount of sequence reported, there is low statistical support for some nodes within Testudona and so we do not propose names for those groups. A preliminary and conservative estimation of divergence times implies a late Miocene diversification for the testudonan clade (6-12 million years ago), matching their first appearance in the fossil record. The multi-continental distribution of testudonan turtles can be explained by the establishment of permanent connections between Europe, Africa, and Asia at this time. The arrival of testudonan turtles to Africa occurred after one or more initial tortoise invasions gave rise to the diverse (>25 species) 'Geochelone complex.' Two unusual genomic features are reported for the mtDNA of one tortoise, M. tornieri: (1) nad4 has a shift of reading frame that we suggest is resolved by translational frameshifting of the mRNA on the ribosome during protein synthesis and (2) there are two copies of the control region and trnF, with the latter having experienced multiple nucleotide substitutions in a pattern suggesting that each is being maintained by selection

A molecular assessment of phylogenetic relationships and lineage accumulation rates within the family Salamandridae (Amphibia, Caudata)

We examine phylogenetic relationships among salamanders of the family Salamandridae using approximately 2700 bases of new mtDNA sequence data (the tRNA(Leu), ND1, tRNA(Gln), tRNA(Gln), tRNA(Met), ND2, tRNA(Trp), tRNA(Ala), tRNA(Asn), tRNA(Cys), tRNA(Tyr), and Cot genes and the origin for light-strand replication) collected from 96 individuals representing 61 of the 66 recognized salamandrid species and outgroups. Phylogenetic analyses using maximum parsimony and Bayesian analysis are performed on the new data alone and combined with previously reported sequences from other parts of the mitochondrial genome. The basal phylogenetic split is a polytomy of lineages ancestral to (1) the Italian newt Salamandrina terdigitata, (2) a strongly supported clade comprising the "true" salamanders (genera Chioglossa, Mertensiella, Lyciasalamandra, and Salamandra), and (3) a strongly supported clade comprising all newts except S. terdigitata. Strongly supported clades within the true salamanders include monophyly of each genus and grouping Chioglossa and Mertensiella as the sister taxon to a clade comprising Lyciasalamandra and Salamandra. Among newts, genera Echinotriton, Pleurodeles, and Tylototriton form a strongly supported clade whose sister taxon comprises the genera Calotriton, Cynops, Euproctus, Neurergus, Notophthalmus, Pachytriton, Paramesotriton, Taricha, and Triturus. Our results strongly support monophyly of all polytypic newt genera except Paramesotriton and Triturus, which appear paraphyletic, and Calotriton, for which only one of the two species is sampled. Other well-supported clades within newts include (1) Asian genera Cynops, Pachytriton, and Paramesotriton, (2) North American genera Notophthalmus and Taricha, (3) the Triturus vulgaris species group, and (4) the Triturus cristatus species group; some additional groupings appear strong in Bayesian but not parsimony analyses. Rates of lineage accumulation through time are evaluated using this nearly comprehensive sampling of salamandrid species-level lineages. Rate of lineage accumulation appears constant throughout salamandrid evolutionary history with no obvious fluctuations associated with origins of morphological or ecological novelties

Cranial shape variation and molecular phylogenetic structure of crested newts (Triturus cristatus superspecies: Caudata, Salamandridae) in the Balkans

In the present study, we investigated the degree of congruence between phylogeny, as inferred from mitochondrial (mt)DNA sequences, and cranium shape variation of crested newts (Triturus cristatus superspecies) in the Balkans. These newts belong to four phylogenetic clades defined by mtDNA analysis, and significantly differed in cranial shape. Allometry explained a high percentage of shape variation in crested newts. The clade-specific allometric slopes significantly diverged for both the ventral cranium and dorsal cranium, indicating that differences in shape between clades could not be a simple consequence of their difference in size. The analysis of hierarchical and spatial variation showed similarity in the patterns of global and spatially localized hierarchical variation of cranial shape. We also found significant congruence between the pattern of cranial shape variation and molecular phylogeny. The differences in morphology of Triturus dobrogicus in comparison to other crested newt clades, including marked differences in cranium shape, is discussed in the context of the evolution and ecology of crested newts. (C) 2008 The Linnean Society of London, Biological Journal of the Linnean Society, 2008, 95, 348-360.Serbian Ministry of Science and Environmental Protection [143052]; Special Account for Scientific Research, University of Athens, Greece [70/4/3299

A Molecular Assessment of Phylogenetic Relationships and Lineage Diversification Within the Family Salamandridae (Amphibia, Caudata)

Phylogenetic relationships among species of the salamander family Salamandridae are investigated using nearly 3000 nucleotide bases of newly reported mitochondrial DNA sequence data from the mtDNA genic region spanning the genes tRNALeu-COI. This study uses nearly comprehensive species-level sampling to provide the first complete phylogeny for the Salamandridae. Deep phylogenetic relationships among the three most divergent lineages in the family Salamandrina terdigitata, a clade comprising the "True" salamanders, and a clade comprising all newts except S. terdigitata are difficult to resolve. However, most relationships within the latter two lineages are resolved with robust levels of branch support. The genera Euproctus and Triturus are statistically shown to be nonmonophyletic, instead each contains a diverse set of lineages positioned within the large newt clade. The genus Paramesotriton is also resolve as a nonmonophyletic group, with the newly described species P. laoensis constituting a divergent lineage placed in a sister position to clade containing all Pachytriton species and all remaining Paramesotriton species. Sequence divergences between P. laoensis and other Paramesotriton species are as great as those comparing P. laoensis and species of the genera Cynops and Pachytriton. Analyses of lineage diversification across the Salamandridae indicate that, despite its exceptional diversity, lineage accumulation appears to have been constant across time, indicating that it does not represent a true species radiation