Screening for Culturable Microorganisms from Cave Environments (Slovenia)

V vzorcih iz treh različnih jam smo proučevali mikroorganizme, ki jih lahko gojimo v laboratorijskih razmerah. V jami Pečina v Borštu smo prisotnost mikroorganizmov proučevali v preperelem apnencu, jamskem srebru in v jamski ponvici, kjer se na površini velikokrat pojavljajo kalcitne ploščice; v Martinski jami v preperelem apnencu, v Snežni jami na Raduhi pa kalcitno jamsko mleko. Podatki o številu mikroorganizmov so bili v nekaterih primerih dopolnjeni πe z identifikacijo širše skupine ali rodu. Rezultati kažejo, da so poleg še nekaterih drugih bakterijskih in glivnih taksonov fluorescentne pseudomonade prevladujoči mikroorganizmi.Various microenvironments in three different caves were screened for the presence of indigenous culturable microorganisms: extremely weathered limestone in Pečina v Borštu and Martinska jama, cave silver and calcite rafts on the surface of subterranean ponds in Pečina v Borštu and calcite moonmilk speleotheme in Snežna jama of Raduha mountain. The counts of viable cells collected are supplemented with laboratory data necessary to establish genus or wider taxonomic group level identity of isolates. Besides other bacterial and fungal groups flourescent pseudomonads are prevailing among isolates

FT-Raman Analysis of Cellulose based Museum Textiles: Comparison of Objects Infected and Non-infected by Fungi

It is well-known fact that the supermolecular structure of museum textiles changes during aging and biodeterioration. These structural changes can be observed by different spectroscopic methods such as FT-IR, FT-Raman, and dispersive Raman spectroscopy. The purpose of the presented research is to present the usability of FT-Raman spectroscopy method for the analysis of the cellulose structure of the biodeteriorated historical textile fibers. Although historical textiles have already been analyzed using FT-Raman spectroscopy the method has been rarely used to analyze the changes of supermolecular structure of the biodeteriorated historical textiles attacked by microorganisms. In the research, cellulose textile samples from different museums and religious institutions were analyzed. Contemporary and historical cellulose textiles were scanned by FT-Raman spectra of reference and compared to determine the supermolecular cellulose fiber structure of each material. It has been shown that structural changes such as depolymerization and crystallinity changes can be detected using FT-Raman spectroscopy. The supermolecular changes of the cellulose fiber structure have been detected in biodeteriorated as well as in historical objects not infected by microorganisms. In the spectra of biodeteriorated objects, more intensive changes of spectral features were observed compared to spectra of non-infected samples. The changes were more pronounced at the museum objects made of flax. It can be concluded that biodeterioration causes more intensive structural changes than aging. On the basis of the research work, it has been shown that FT-Raman spectroscopy method can be used for the analysis of supermolecular structure changes of cellulose textiles

Low Water Activity Induces the Production of Bioactive Metabolites in Halophilic and Halotolerant Fungi

The aim of the present study was to investigate indigenous fungal communities isolated from extreme environments (hypersaline waters of solar salterns and subglacial ice), for the production of metabolic compounds with selected biological activities: hemolysis, antibacterial, and acetylcholinesterase inhibition. In their natural habitats, the selected fungi are exposed to environmental extremes, and therefore the production of bioactive metabolites was tested under both standard growth conditions for mesophilic microorganisms, and at high NaCl and sugar concentrations and low growth temperatures. The results indicate that selected halotolerant and halophilic species synthesize specific bioactive metabolites under conditions that represent stress for non-adapted species. Furthermore, adaptation at the level of the chemical nature of the solute lowering the water activity of the medium was observed. Increased salt concentrations resulted in higher hemolytic activity, particularly within species dominating the salterns. The appearance of antibacterial potential under stress conditions was seen in the similar pattern of fungal species as for hemolysis. The active extracts exclusively affected the growth of the Gram-positive bacterium tested, Bacillus subtilis. None of the extracts tested showed inhibition of acetylcholinesterase activity

The extremely halotolerant black yeast Hortaea werneckii - a model for intraspecific hybridization in clonal fungi

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No need for speed

Microbial growth under extreme conditions is often slow. This is partly because large amounts of energy are diverted into cellular mechanisms that allow survival under hostile conditions. Because this challenge is universal and diversity in extreme environments is low compared to non-extreme environments, slow-growing microorganisms are not overgrown by other species. In some cases, especially when nutrients are scarce, slow growth was even shown to increase stress tolerance. And in at least some species of extremotolerant and extremophilic fungi, growth rate appears to be coupled with their very unusual morphologies, which in turn may be an adaptation to extreme conditions. However, there is more than one strategy of survival in extreme environments. Fungi that thrive in extremes can be divided into (i) ubiquitous and polyextremotolerant generalists and (ii) rarely isolated specialists with narrow ecological amplitudes. While generalists can compete with mesophilic species, specialists cannot. When adapting to extreme conditions, the risk of an evolutionary trade-off in the form of reduced fitness under mesophilic conditions may limit the maximum stress tolerance achievable by polyextremotolerant generalists. At the same time, specialists are rarely found in mesophilic environments, which allows them to evolve to ever greater extremotolerance, since a reduction of mesophilic fitness is likely to have little impact on their evolutionary success

Xerophilic fungal genus Wallemia: Bioactive inhabitants of marine solar salterns and salty food

Wallemia is a genus of cosmopolitan xerophilic fungi, frequently involved in food spoilage of particularly sweet, salty, and dried food. Until recently, only a single species, Wallemia sebi, was recognized in the genus. When a large group of strains globally collected in salterns and other different ecological niches was analyzed on the level of physiological, morphological and molecular characteristics, a new basidiomycetous class, Wallemiomycetes, covering an order of Wallemiales was proposed and three Wallemia species were recognized: W. ichthyophaga, W. sebi and W. muriae. Wallemia ichthyophaga was recognized as the most halophilic eukaryote known, thus representing an appropriate eukaryotic model for in depth studies of adaptation to hypersaline conditions. Our preliminary studies indicated that all three Wallemia species synthesized a yet undescribed haemolytic compound under, surprisingly, low water activity conditions. Due to the taxonomic status w hich was unrevealed only recently, there were so far no reports on the production of any bioactive compounds by the three newly described species. The article aims to present the taxonomy, ecology, physiology and so far described molecular mechanisms of adaptations to life at low water activity, as well as bioactive potential of the genus Wallemia, a phylogenetically ancient taxon and a taxonomic maverick within Basidiomycota

Dishwashers - a man-made ecological niche accommodating human opportunistic fungal pathogens

Habitats in human households may accommodate microorganisms outside the commonspectrum of ubiquitous saprobes. Enrichment of fungi that may require specific environmental conditions was observed in dishwashers, 189 of which were sampled in private homes of 101 towns or communities. One-hundred-two were sampled from various localities in Sloveniač 42 from other European countriesč 13 and 3 from North and South America, respectivelyč 5 from Israelč10 from South Africač 7 from Far East Asiač and 7 from Australia. Isolation was performed on samples incubated at 37 degrees C. Species belonging to genera Aspergillus, Candida, Magnusiomyces, Fusarium, Penicilliumand Rhodotorula were found occasionally, while the black yeasts Exophiala dermatitidis and Exophiala phaeomuriformis (Chaetothyriales) were persistently and most frequently isolated. Sixty-two percent of the dishwashers were positive for fungi, and 56% of these accommodated Exophiala. Both Exophiala species are known to be able to cause systemic disease in humans and frequently colonize the lungs of patients with cystic fibrosis. Weconclude that high temperature, high moisture and alkaline pH values typically occurring in dishwashers can provide an alternative habitat for species also known to be pathogenic to humans