Selection of DNA nanoparticles with preferential binding to aggregated protein target.

High affinity and specificity are considered essential for affinity reagents and molecularly-targeted therapeutics, such as monoclonal antibodies. However, life's own molecular and cellular machinery consists of lower affinity, highly multivalent interactions that are metastable, but easily reversible or displaceable. With this inspiration, we have developed a DNA-based reagent platform that uses massive avidity to achieve stable, but reversible specific recognition of polyvalent targets. We have previously selected these DNA reagents, termed DeNAno, against various cells and now we demonstrate that DeNAno specific for protein targets can also be selected. DeNAno were selected against streptavidin-, rituximab- and bevacizumab-coated beads. Binding was stable for weeks and unaffected by the presence of soluble target proteins, yet readily competed by natural or synthetic ligands of the target proteins. Thus DeNAno particles are a novel biomolecular recognition agent whose orthogonal use of avidity over affinity results in uniquely stable yet reversible binding interactions

The role of aerodynamic forces in a mathematical model for suspension bridges

In a fish-bone model for suspension bridges studied by us in a previous paper we introduce linear aerodynamic forces. We numerically analyze the role of these forces and we theoretically show that they do not influence the onset of torsional oscillations. This suggests a new explanation for the origin of instability in suspension bridges: it is a combined interaction between structural nonlinearity and aerodynamics and it follows a precise pattern. This gives an answer to a long-standing question about the origin of torsional instability in suspension bridges

Repair of a Reinforced Earth Wall

The facing of a Reinforced Earth retaining wall, built at an altitude of 1200 m, was damaged during the winter 1981. The repair was achieved quickly and under traffic. The instrumentation carried out on the repairs and the tests run on the backfill material have revealed the action of the frost and its increase in the fortuitous presence of water

Tuning gaps and phases of a two-subband system in a quantizing magnetic field

In this work we study the properties of a two-subband quasi-two-dimensional electron system in a strong magnetic field when the electron filling factor is equal to four. When the cyclotron energy is close to the intersubband splitting the system can be mapped onto a four-level electron system with an effective filling factor of two. The ground state is either a ferromagnetic state or a spin-singlet state, depending on the values of the inter-level splitting and Zeeman energy. The boundaries between these phases are strongly influenced by the inter-electron interaction. A significant exchange-mediated enhancement of the excitation gap results in the suppression of the electron-phonon interaction. The rate of absorption of non-equilibrium phonons is calculated as a function of Zeeman energy and inter-subband splitting. The phonon absorption rate has two peaks as a function of intersubband splitting and has a step-like structure as a function of Zeeman energy

Quasiparticle properties of a coupled quantum wire electron-phonon system

We study leading-order many-body effects of longitudinal optical (LO) phonons on electronic properties of one-dimensional quantum wire systems. We calculate the quasiparticle properties of a weakly polar one dimensional electron gas in the presence of both electron-phonon and electron-electron interactions. The leading-order dynamical screening approximation (GW approximation) is used to obtain the electron self-energy, the quasiparticle spectral function, and the quasiparticle damping rate in our calculation by treating electrons and phonons on an equal footing. Our theory includes effects (within the random phase approximation) of Fermi statistics, Landau damping, plasmon-phonon mode coupling, phonon renormalization, dynamical screening, and impurity scattering. In general, electron-electron and electron-phonon many-body renormalization effects are found to be nonmultiplicative and nonadditive in our theoretical results for quasiparticle properties.Comment: 21 pages, Revtex, 12 figures enclose

Three-dimensional pattern formation, multiple homogeneous soft modes, and nonlinear dielectric electroconvection

Patterns forming spontaneously in extended, three-dimensional, dissipative systems are likely to excite several homogeneous soft modes ($\approx$ hydrodynamic modes) of the underlying physical system, much more than quasi one- and two-dimensional patterns are. The reason is the lack of damping boundaries. This paper compares two analytic techniques to derive the patten dynamics from hydrodynamics, which are usually equivalent but lead to different results when applied to multiple homogeneous soft modes. Dielectric electroconvection in nematic liquid crystals is introduced as a model for three-dimensional pattern formation. The 3D pattern dynamics including soft modes are derived. For slabs of large but finite thickness the description is reduced further to a two-dimensional one. It is argued that the range of validity of 2D descriptions is limited to a very small region above threshold. The transition from 2D to 3D pattern dynamics is discussed. Experimentally testable predictions for the stable range of ideal patterns and the electric Nusselt numbers are made. For most results analytic approximations in terms of material parameters are given.Comment: 29 pages, 2 figure

Electron-phonon scattering at the intersection of two Landau levels

We predict a double-resonant feature in the magnetic field dependence of the phonon-mediated longitudinal conductivity $\sigma_{xx}$ of a two-subband quasi-two-dimensional electron system in a quantizing magnetic field. The two sharp peaks in $\sigma_{xx}$ appear when the energy separation between two Landau levels belonging to different size-quantization subbands is favorable for acoustic-phonon transitions. One-phonon and two-phonon mechanisms of electron conductivity are calculated and mutually compared. The phonon-mediated interaction between the intersecting Landau levels is considered and no avoided crossing is found at thermal equilibrium.Comment: 13 pages, 8 figure

Modulated structures in electroconvection in nematic liquid crystals

Motivated by experiments in electroconvection in nematic liquid crystals with homeotropic alignment we study the coupled amplitude equations describing the formation of a stationary roll pattern in the presence of a weakly-damped mode that breaks isotropy. The equations can be generalized to describe the planarly aligned case if the orienting effect of the boundaries is small, which can be achieved by a destabilizing magnetic field. The slow mode represents the in-plane director at the center of the cell. The simplest uniform states are normal rolls which may undergo a pitchfork bifurcation to abnormal rolls with a misaligned in-plane director.We present a new class of defect-free solutions with spatial modulations perpendicular to the rolls. In a parameter range where the zig-zag instability is not relevant these solutions are stable attractors, as observed in experiments. We also present two-dimensionally modulated states with and without defects which result from the destabilization of the one-dimensionally modulated structures. Finally, for no (or very small) damping, and away from the rotationally symmetric case, we find static chevrons made up of a periodic arrangement of defect chains (or bands of defects) separating homogeneous regions of oblique rolls with very small amplitude. These states may provide a model for a class of poorly understood stationary structures observed in various highly-conducting materials ("prechevrons" or "broad domains").Comment: 13 pages, 13 figure

Subsurface structure of Planum Boreum from Mars Reconnaissance Orbiter Shallow Radar soundings

We map the subsurface structure of Planum Boreum using sounding data from the Shallow Radar (SHARAD) instrument onboard the Mars Reconnaissance Orbiter. Radar coverage throughout the 1,000,000- km2 area reveals widespread reflections from basal and internal interfaces of the north polar layered deposits (NPLD). A dome-shaped zone of diffuse reflectivity up to 12 ls (1-km thick) underlies twothirds of the NPLD, predominantly in the main lobe but also extending into the Gemina Lingula lobe across Chasma Boreale. We equate this zone with a basal unit identified in image data as Amazonian sand-rich layered deposits [Byrne, S., Murray, B.C., 2002. J. Geophys. Res. 107, 5044, 12 pp. doi:10.1029/2001JE001615; Fishbaugh, K.E., Head, J.W., 2005. Icarus 174, 444–474; Tanaka, K.L., Rodriguez, J.A.P., Skinner, J.A., Bourke, M.C., Fortezzo, C.M., Herkenhoff, K.E., Kolb, E.J., Okubo, C.H., 2008. Icarus 196, 318–358]. Elsewhere, the NPLD base is remarkably flat-lying and co-planar with the exposed surface of the surrounding Vastitas Borealis materials. Within the NPLD, we delineate and map four units based on the radar-layer packets of Phillips et al. [Phillips, R.J., and 26 colleagues, 2008. Science 320, 1182– 1185] that extend throughout the deposits and a fifth unit confined to eastern Gemina Lingula. We estimate the volume of each internal unit and of the entire NPLD stack (821,000 km3), exclusive of the basal unit. Correlation of these units to models of insolation cycles and polar deposition [Laskar, J., Levrard, B., Mustard, J.F., 2002. Nature 419, 375–377; Levrard, B., Forget, F., Montmessin, F., Laskar, J., 2007. J. Geophys. Res. 112, E06012, 18 pp. doi:10.1029/2006JE002772] is consistent with the 4.2-Ma age of the oldest preserved NPLD obtained by Levrard et al. [Levrard, B., Forget, F., Montmessin, F., Laskar, J., 2007. J. Geophys. Res. 112, E06012, 18 pp. doi:10.1029/2006JE002772]. We suggest a dominant layering mechanism of dust–content variation during accumulation rather than one of lag production during periods of sublimation