The cycling peroxisomal targeting signal type 1 - receptor Pex5p: reaching the circle’s end with ubiquitin

Peroxisomes are single-membrane bound organelles that are found nearly ubiquitiously in eukaryotic cells. Their main task is the breakdown of fatty acids by beta-oxidation and the detoxification of hydrogen peroxide. However, these so called “multi-purpose organelles” also display several other metabolic functions, which can differ between species, tissues or growth conditions of the cells. This high plasticity of peroxisomal functions is enabled by an adjustment of the protein composition, which in turn is regulated by the dynamically operating protein import receptors. Subsequent to their synthesis on free ribosomes in the cytosol, peroxisomal matrix proteins are recognizes by import receptors by means of a peroxisomal targeting sequence (PTS). Most peroxisomal matrix proteins harbor a PTS-type 1 (PTS1) signal, which is bound by the PTS1-receptor Pex5p in the cytosol. The PTS1-receptor/cargo-complex reaches a docking complex at the peroxisome, where Pex5p is thought to become a building block of a transiently opened translocation pore. After the translocation of the folded cargo proteins over the membrane into the peroxisomal matrix, Pex5p is exported back to the cytosol for further rounds of matrix protein import. This dislocation step comprises the only energy-consuming reactions of the entire receptor cycle, because Pex5p has to be monoubiquitinated at a conserved cysteine before it can be extracted from the membrane by the AAA-type ATPases Pex1p and Pex6p. In case this recycling pathway is hampered, Pex5p gets polyubiquitinated on lysine residues and degraded by the proteasome. This review focuses on the PTS1-receptor Pex5p and discusses recent data and concepts regarding the molecular mechanism of cargo recognition, pore formation, cargo release and ubiquitination-dependent export and highlights the clinical relevance of Pex5p in health and disease

The cytosolic domain of Pex22p stimulates the Pex4p-dependent ubiquitination of the PTS1-receptor

Peroxisomal biogenesis is an ubiquitin-dependent process because the receptors required for the import of peroxisomal matrix proteins are controlled via their ubiquitination status. A key step is the monoubiquitination of the import receptor Pex5p by the ubiquitin-conjugating enzyme (E2) Pex4p. This monoubiquitination is supposed to take place after Pex5p has released the cargo into the peroxisomal matrix and primes Pex5p for the extraction from the membrane by the mechano-enzymes Pex1p/Pex6p. These two AAA-type ATPases export Pex5p back to the cytosol for further rounds of matrix protein import. Recently, it has been reported that the soluble Pex4p requires the interaction to its peroxisomal membrane-anchor Pex22p to display full activity. Here we demonstrate that the soluble C-terminal domain of Pex22p harbours its biological activity and that this activity is independent from its function as membrane-anchor of Pex4p. We show that Pex4p can be functionally fused to the trans-membrane segment of the membrane protein Pex3p, which is not directly involved in Pex5p-ubiquitination and matrix protein import. However, this Pex3(N)-Pex4p chimera can only complement the double-deletion strain pex4Δ/pex22Δ and ensure optimal Pex5p-ubiquitination when the C-terminal part of Pex22p is additionally expressed in the cell. Thus, while the membrane-bound portion Pex22(N)p is not required when Pex4p is fused to Pex3(N)p, the soluble Pex22(C)p is essential for peroxisomal biogenesis and efficient monoubiquitination of the import receptor Pex5p by the E3-ligase Pex12p in vivo and in vitro. The results merge into a picture of an ubiquitin-conjugating complex at the peroxisomal membrane consisting of three domains: the ubiquitin-conjugating domain (Pex4p), a membrane-anchor domain (Pex22(N)p) and an enhancing domain (Pex22(C)p), with the membrane-anchor domain being mutually exchangeable, while the Ubc- and enhancer-domains are essential

Fluidity and lipid composition of membranes of peroxisomes, mitochondria and the ER from oleic acid-induced saccharomyces cerevisiae

The maintenance of a fluid lipid bilayer is key for organelle function and cell viability. Given the critical role of lipid compositions in determining membrane properties and organelle identity, it is clear that cells must have elaborate mechanism for membrane maintenance during adaptive responses to environmental conditions. Emphasis of the presented study is on peroxisomes, oleic acid-inducible organelles that are essential for the growth of yeast under conditions of oleic acid as single carbon source. Here, we isolated peroxisomes, mitochondria and ER from oleic acid-induced Saccharomyces cerevisiae and determined the lipid composition of their membranes using shotgun lipidomics and compared it to lipid ordering using fluorescence microscopy. In comparison to mitochondrial and ER membranes, the peroxisomal membranes were slightly more disordered and characterized by a distinct enrichment of phosphaditylinositol, indicating an important role of this phospholipid in peroxisomal membrane associated processes

Nedd4-dependent lysine-11-linked polyubiquitination of the tumour suppressor Beclin 1

Beclin 1, a subunit of the class III phosphatidylinositol 3-kinase complex, is a tumour suppressor with a central role in endocytic trafficking, cytokinesis and the cross-regulation between autophagy and apoptosis. Interestingly, not only reduced expression but also overexpression of Beclin 1 is correlated with cancer development and metastasis. Thus it seems necessary for the cell to balance the protein levels of Beclin 1. In the present study we describe a regulatory link between Beclin 1 and the ubiquitin ligase Nedd4 (neural-precursor-cell-expressed developmentally down-regulated 4). We establish Nedd4 as a novel binding partner of Beclin 1 and demonstrate that Nedd4 polyubiquitinates Beclin 1 with Lys11- and Lys63-linked chains. Importantly, Nedd4 expression controls the stability of Beclin 1, and depletion of the Beclin 1-interacting protein VPS34 causes Nedd4-mediated proteasomal degradation of Beclin 1 via Lys11-linked polyubiquitin chains. Beclin 1 is thus the first tumour suppressor reported to be controlled by Lys11-linked polyubiquitination

The cycling peroxisomal targeting signal type 1 - receptor Pex5p: reaching the circle’s end with ubiquitin

Peroxisomes are single-membrane bound organelles that are found nearly ubiquitiously in eukaryotic cells. Their main task is the breakdown of fatty acids by beta-oxidation and the detoxification of hydrogen peroxide. However, these so called “multi-purpose organelles” also display several other metabolic functions, which can differ between species, tissues or growth conditions of the cells. This high plasticity of peroxisomal functions is enabled by an adjustment of the protein composition, which in turn is regulated by the dynamically operating protein import receptors. Subsequent to their synthesis on free ribosomes in the cytosol, peroxisomal matrix proteins are recognizes by import receptors by means of a peroxisomal targeting sequence (PTS). Most peroxisomal matrix proteins harbor a PTS-type 1 (PTS1) signal, which is bound by the PTS1-receptor Pex5p in the cytosol. The PTS1-receptor/cargo-complex reaches a docking complex at the peroxisome, where Pex5p is thought to become a building block of a transiently opened translocation pore. After the translocation of the folded cargo proteins over the membrane into the peroxisomal matrix, Pex5p is exported back to the cytosol for further rounds of matrix protein import. This dislocation step comprises the only energy-consuming reactions of the entire receptor cycle, because Pex5p has to be monoubiquitinated at a conserved cysteine before it can be extracted from the membrane by the AAA-type ATPases Pex1p and Pex6p. In case this recycling pathway is hampered, Pex5p gets polyubiquitinated on lysine residues and degraded by the proteasome. This review focuses on the PTS1-receptor Pex5p and discusses recent data and concepts regarding the molecular mechanism of cargo recognition, pore formation, cargo release and ubiquitination-dependent export and highlights the clinical relevance of Pex5p in health and disease

Charakterisierung der späten Schritte des peroxisomalen Matrixprotein Imports in Saccharomyces cerevisiae\textit {Saccharomyces cerevisiae}

Im Rahmen der vorliegenden Arbeit ist eine funktionelle Analyse der späten Schritte des peroxisomalen Matrixproteinimports in $\textit {Saccharomyces cerevisiae}$ durchgeführt worden. Die Hauptaussagen können wie folgt zusammengefasst werden: 1) Bei Deletion oder Inaktivierung der Komponenten des AAA- oder des Pex4p/Pex22p-Komplexes wird der PTS1-Rezeptor Pex5p von Ubc4p an zwei Lysinresten polyubiquitinyliert und anschließend im Proteasom degradiert. 2) Mittels der Etablierung eines $\textit {in vitro}$ Export Systems konnte den AAA-Peroxinen Pex1p und Pex6p die Funktion als Dislokasen für den ATP-abhängigen Export von Pex5p zugewiesen werden. 3) Für Pex4p konnte Pex5p als Substrat für eine Monoubiquitinylierung identifiziert werden. 4) Der Energieabhängigkeit des peroxisomalen Proteinimports kann letztendlich in zwei Schritte differenziert werden: Pex4p-abhängige Rezeptor-Ubiquitinylierung und AAA-abhängige Dislokation

The Peroxisomal PTS1-Import Defect of PEX1- Deficient Cells Is Independent of Pexophagy in Saccharomyces cerevisiae

The important physiologic role of peroxisomes is shown by the occurrence of peroxisomal biogenesis disorders (PBDs) in humans. This spectrum of autosomal recessive metabolic disorders is characterized by defective peroxisome assembly and impaired peroxisomal functions. PBDs are caused by mutations in the peroxisomal biogenesis factors, which are required for the correct compartmentalization of peroxisomal matrix enzymes. Recent work from patient cells that contain the Pex1(G843D) point mutant suggested that the inhibition of the lysosome, and therefore the block of pexophagy, was beneficial for peroxisomal function. The resulting working model proposed that Pex1 may not be essential for matrix protein import at all, but rather for the prevention of pexophagy. Thus, the observed matrix protein import defect would not be caused by a lack of Pex1 activity, but rather by enhanced removal of peroxisomal membranes via pexophagy. In the present study, we can show that the specific block of PEX1 deletion-induced pexophagy does not restore peroxisomal matrix protein import or the peroxisomal function in beta-oxidation in yeast. Therefore, we conclude that Pex1 is directly and essentially involved in peroxisomal matrix protein import, and that the PEX1 deletion-induced pexophagy is not responsible for the defect in peroxisomal function. In order to point out the conserved mechanism, we discuss our findings in the context of the working models of peroxisomal biogenesis and pexophagy in yeasts and mammals