53 research outputs found

    Industry and Academia Collaboration: A win win situation

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    Child t-shirt size data set from 3D body scanner anthropometric measurements and a questionnaire

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    [EN] A dataset of a fit assessment study in children is presented. Anthropometric measurements of 113 children were obtained using a 3D body scanner. Children tested a t-shirt of different sizes and a different model for boys and girls, and their fit was assessed by an expert. This expert labeled the fit as 0 (correct), ¿1 (if the garment was small for that child), or 1 (if the garment was large for that child) in an ordered factor called Size-fit. Moreover, the fit was numerically assessed from 1 (very poor fit) to 10 (perfect fit) in a variable called Expert evaluation. This data set contains the differences between the reference mannequin of the evaluated size and the child¿s anthropometric measurements for 27 variables. Besides these variables, in the data set, we can also find the gender, the size evaluated, and the size recommended by the expert, including if an intermediate, but nonexistent size between two consecutive sizes would have been the right size. In total, there are 232 observations. The analysis of these data can be found in Pierola et al. (2016) [2].This work has been partially supported by Grants DPI2013-47279-C2-1-R and DPI2013-47279-C2-2-R.Pierola, A.; Epifanio, I.; Alemany Mut, MS. (2017). Child t-shirt size data set from 3D body scanner anthropometric measurements and a questionnaire. Data in Brief. 11:311-315. https://doi.org/10.1016/j.dib.2017.02.025S3113151

    Study on controllable and uncontrollable factors affecting foot shape

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    Ballester Fernandez, A.; Pierola, A.; Solves Camallonga, C.; Parrilla Bernabé, E.; Uriel-Molto, J.; Zaimi-Tortajada, IIM.; Page Del Pozo, AF.... (2019). Study on controllable and uncontrollable factors affecting foot shape. Footwear Science. 11(Sup1):123-125. https://doi.org/10.1080/19424280.2019.1606113S12312511Sup1BALLESTER, A., PIEROLA, A., PARRILLA, E., IZQUIERDO, M., URIEL, J., NACHER, B., … ALEMANY, S. (2017). Fast, Portable and Low-Cost 3D Foot Digitizers: Validity and Reliability of Measurements. Proceedings of 3DBODY.TECH 2017 - 8th International Conference and Exhibition on 3D Body Scanning and Processing Technologies, Montreal QC, Canada, 11-12 Oct. 2017. doi:10.15221/17.218Houston, V. L., Luo, G., Mason, C. P., Mussman, M., Garbarini, M., & Beattie, A. C. (2006). Changes in Male Foot Shape and Size with Weightbearing. Journal of the American Podiatric Medical Association, 96(4), 330-343. doi:10.7547/0960330Moholkar, K., & Fenelon, G. (2001). Diurnal variations in volume of the foot and ankle. The Journal of Foot and Ankle Surgery, 40(5), 302-304. doi:10.1016/s1067-2516(01)80066-1XIONG, S., GOONETILLEKE, R. S., ZHAO, J., LI, W., & WITANA, C. P. (2009). Foot deformations under different load-bearing conditions and their relationships to stature and body weight. Anthropological Science, 117(2), 77-88. doi:10.1537/ase.07091

    Modeling Personalized Adjuvant TreaTment in EaRly stage coloN cancer (PATTERN)

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    Aim To develop a decision model for the population-level evaluation of strategies to improve the selection of stage II colon cancer (CC) patients who benefit from adjuvant chemotherapy. Methods A Markov cohort model with a one-month cycle length and a lifelong time horizon was developed. Five health states were included; diagnosis, 90-day mortality, death other causes, recurrence and CC death. Data from the Netherlands Cancer Registry were used to parameterize the model. Transition probabilities were estimated using parametric survival models including relevant clinical and pathological covariates. Subsequently, biomarker status was implemented using external data. Treatment effect was incorporated using pooled trial data. Model development, data sources used, parameter estimation, and internal and external validation are described in detail. To illustrate the use of the model, three example strategies were evaluated in which allocation of treatment was based on (A) 100% adherence to the Dutch guidelines, (B) observed adherence to guideline recommendations and (C) a biomarker-driven strategy. Results Overall, the model showed good internal and external validity. Age, tumor growth, tumor sidedness, evaluated lymph nodes, and biomarker status were included as covariates. For the example strategies, the model predicted 83, 87 and 77 CC deaths after 5 years in a cohort of 1000 patients for strategies A, B and C, respectively. Conclusion This model can be used to evaluate strategies for the allocation of adjuvant chemotherapy in stage II CC patients. In future studies, the model will be used to estimate population-level long-term health gain and cost-effectiveness of biomarker-based selection strategies.Financial support for this study was provided by a grant from ZonMw (Grant number: 848015007). ZonMw had no role in designing the study, interpreting the data, writing the manuscript, and publishing the report

    A Novel Noninvasive Method Based on Salivary Inflammatory Biomarkers for the Screening of Celiac Disease

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    This study was supported by a grant from theSpanish Ministry of Science, Universities andInnovation (SAF2017-91873-EXP), a grant fromthe Department of Health from the BasqueGovernment (EJ-2017111082), and a researchfellowship from the Asociación de Celiacos ySensibles al Gluten de Madrid (A.C.R.). Alsosupported by a predoctoral fellowship from theUniversity of the Basque Country (M.S.dlC.) andthe Basque Government (A.O.G.)

    Utilidad de cinco tejidos para discriminar variantes somáticas y germinales en neoplasias mieloides

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    CO-091 Introducción: Los síndromes hereditarios están adquiriendo una gran importancia en el panorama de las hemopatías malignas. De hecho, la revisión de 2016 de la OMS ha incluido una sección sobre predisposición germinal a neoplasias mieloides (NM). Distinguir entre una neoplasia mieloide de predisposición hereditaria (NMPH) de una NM esporádica es crucial por su impacto en el seguimiento de estos pacientes, así como en el de sus familiares sanos. La generalización de técnicas como la NGS en el estudio inicial de pacientes con NM ha puesto de manifiesto que un porcentaje no desdeñable de pacientes podrían tener variantes de origen germinal. Sin embargo, para su diagnóstico, se precisa de la confirmación de la naturaleza de la variante en un tejido no hematopoyético, sin que exista un consenso sobre el tejido a utilizar. Métodos: Nos propusimos evaluar cinco tejidos (fibroblastos de médula ósea, fibroblastos de piel, folículos pilosos, frotis bucal y células CD3+) en cuanto a su capacidad de discriminar si las variantes sospechosas eran de origen somático o germinal. El estudio se realizó en una cohorte de 299 pacientes a los que en algún momento del curso de la enfermedad se les hizo un panel de NGS Pan-Mieloide (PMP, 48 genes), que incluye 22 genes descritos en la literatura como relacionados con NMPH, incluyendo los recomendados por la OMS (ANKRD26, CEBPA, DDX41, ETV6, GATA2, RUNX1). De los 299 pacientes, 100 portaban variantes en algunos de esos 22 genes, que presentaban una frecuencia alélica (VAF) ~ 50%. Recolectamos un total de 21 muestras de tejidos ..

    Transfer of SCN1A to the brain of adolescent mouse model of Dravet syndrome improves epileptic, motor, and behavioral manifestations

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    Dravet syndrome is a genetic encephalopathy characterized by severe epilepsy combined with motor, cognitive, and behavioral abnormalities. Current antiepileptic drugs achieve only partial control of seizures and provide little benefit on the patient’s neurological development. In >80% of cases, the disease is caused by haploinsufficiency of the SCN1A gene, which encodes the alpha subunit of the Nav1.1 voltage-gated sodium channel. Novel therapies aim to restore SCN1A expression in order to address all disease manifestations. We provide evidence that a high-capacity adenoviral vector harboring the 6-kb SCN1A cDNA is feasible and able to express functional Nav1.1 in neurons. In vivo, the best biodistribution was observed after intracerebral injection in basal ganglia, cerebellum, and prefrontal cortex. SCN1A A1783V knockin mice received the vector at 5 weeks of age, when most neurological alterations were present. Animals were protected from sudden death, and the epileptic phenotype was attenuated. Improvement of motor performance and interaction with the environment was observed. In contrast, hyperactivity persisted, and the impact on cognitive tests was variable (success in novel object recognition and failure in Morris water maze tests). These results provide proof of concept for gene supplementation in Dravet syndrome and indicate new directions for improvement

    Synthetic Conjugates of Ursodeoxycholic Acid Inhibit Cystogenesis in Experimental Models of Polycystic Liver Disease

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    Background and Aims Polycystic liver diseases (PLDs) are genetic disorders characterized by progressive development of symptomatic biliary cysts. Current surgical and pharmacological approaches are ineffective, and liver transplantation represents the only curative option. Ursodeoxycholic acid (UDCA) and histone deacetylase 6 inhibitors (HDAC6is) have arisen as promising therapeutic strategies, but with partial benefits. Approach and Results Here, we tested an approach based on the design, synthesis, and validation of a family of UDCA synthetic conjugates with selective HDAC6i capacity (UDCA-HDAC6i). Four UDCA-HDAC6i conjugates presented selective HDAC6i activity, UDCA-HDAC6i #1 being the most promising candidate. UDCA orientation within the UDCA-HDAC6i structure was determinant for HDAC6i activity and selectivity. Treatment of polycystic rats with UDCA-HDAC6i #1 reduced their hepatomegaly and cystogenesis, increased UDCA concentration, and inhibited HDAC6 activity in liver. In cystic cholangiocytes UDCA-HDAC6i #1 restored primary cilium length and exhibited potent antiproliferative activity. UDCA-HDAC6i #1 was actively transported into cells through BA and organic cation transporters. Conclusions These UDCA-HDAC6i conjugates open a therapeutic avenue for PLDs.Supported by the Spanish Carlos III Health Institute (ISCIII; J.M. Banales: FIS PI15/01132, PI18/01075 and Miguel Servet Program CON14/00129; M.J. Perugorria: PI14/00399, PI17/00022; J.J.G. Marin: FIS PI16/00598) cofinanced by "Fondo Europeo de Desarrollo Regional" (FEDER); CIBERehd (ISCIII): J.M. Banales, M.J. Perugorria, L. Bujanda, and J.J.G. Marin; Spanish Ministry of Economy and Competitiveness (M. J. Perugorria: Ramon y Cajal Program RYC-2015-17755); IKERBASQUE, Basque foundation for Science (M.J. Perugorria and J.M. Banales), Spain; "Junta de Castilla y Leon" (J.J.G. Marin: SA06P17); " Diputacion Foral Gipuzkoa" (J.M. Banales: DFG15/010, DFG16/004; M.J. Perugorria: DFG18/114, DFG19/081), BIOEF (Basque Foundation for Innovation and Health Research: EiTB Maratoia BIO15/CA/016/BD to J.M. Banales), Department of Health of the Basque Country (J.M. Banales: 2017111010; M.J. Perugorria: 2019111024), and Euskadi RIS3 (J.M. Banales: 2016222001, 2017222014, and 2018222029; 2019222054); La Caixa Scientific Foundation (J.M. Banales: HR17-00601); "Fundacion Cientifica de la Asociacion Espanola Contra el Cancer" (AECC Scientific Foundation, to J.M. Banales and J.J.G. Marin); and "Centro Internacional sobre el Envejecimiento", Spain (J.J.G. Marin: OLD-HEPAMARKER, 0348-CIE-6-E). F.J. Caballero-Camino was funded by the Spanish Ministry of Science and Innovation (BES-2014-069148), A. Santos-Laso by the Basque Government (PRE_2018_2_0195), and Pui Y. Lee-Law by the European Association for the Study of the Liver (EASL; Sheila Sherlock Award). The Spanish Ministry of Science and Innovation supported F. P. Cossio: (CTQ2016-80375-P and CTQ2014-51912-REDC) as well as the Basque Government (F.P. Cossio: IT-324-07). I. Rivilla had a postdoctoral contract from the Donostia International Physics Center

    TREM-2 defends the liver against hepatocellular carcinoma through multifactorial protective mechanisms

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    [EN] Objective Hepatocellular carcinoma (HCC) is a prevalent and aggressive cancer usually arising on a background of chronic liver injury involving inflammatory and hepatic regenerative processes. The triggering receptor expressed on myeloid cells 2 (TREM-2) is predominantly expressed in hepatic non-parenchymal cells and inhibits Toll-like receptor signalling, protecting the liver from various hepatotoxic injuries, yet its role in liver cancer is poorly defined. Here, we investigated the impact of TREM-2 on liver regeneration and hepatocarcinogenesis. Design TREM-2 expression was analysed in liver tissues of two independent cohorts of patients with HCC and compared with control liver samples. Experimental HCC and liver regeneration models in wild type and Trem-2-/- mice, and in vitro studies with hepatic stellate cells (HSCs) and HCC spheroids were conducted. Results TREM-2 expression was upregulated in human HCC tissue, in mouse models of liver regeneration and HCC. Trem-2-/- mice developed more liver tumours irrespective of size after diethylnitrosamine (DEN) administration, displayed exacerbated liver damage, inflammation, oxidative stress and hepatocyte proliferation. Administering an antioxidant diet blocked DEN-induced hepatocarcinogenesis in both genotypes. Similarly, Trem-2-/- animals developed more and larger tumours in fibrosis-associated HCC models. Trem-2-/- livers showed increased hepatocyte proliferation and inflammation after partial hepatectomy. Conditioned media from human HSCs overexpressing TREM-2 inhibited human HCC spheroid growth in vitro through attenuated Wnt ligand secretion. Conclusion TREM-2 plays a protective role in hepatocarcinogenesis via different pleiotropic effects, suggesting that TREM-2 agonism should be investigated as it might beneficially impact HCC pathogenesis in a multifactorial manner.Spanish Ministry of Economy and Competitiveness and ’Instituto de Salud Carlos III’ grants (MJP (PI14/00399, PI17/00022 and Ramon y Cajal Programme RYC-2015–17755); JMB (PI12/00380, PI15/01132, PI18/01075, Miguel Servet Programme CON14/00129 and CPII19/00008) cofinanced by ’Fondo Europeo de Desarrollo Regional’ (FEDER); CIBERehd: MJP, JMB and LB), Spain; IKERBASQUE, Basque foundation for Science (MJP and JMB), Spain; ’Diputación Foral de Gipuzkoa’ (MJP: DFG18/114, DFG19/081; JMB: DFG15/010, DFG16/004); BIOEF (Basque Foundation for Innovation and Health Research: EiTB Maratoia BIO15/CA/016/ BD to JMB); Department of Health of the Basque Country (MJP: 2015111100 and 2019111024; JMB: 2017111010), Euskadi RIS3 (JMB: 2016222001, 2017222014, 2018222029, 2019222054, 2020333010) Department of Industry of the Basque Country (JMB: Elkartek: KK-2020/00008) and AECC Scientific Foundation (JMB). AE-B was funded by the University of the Basque Country (UPV/EHU) (PIF2014/11) and by the short-term training fellowship Andrew K Burroughs (European Association for the Study of the Liver, EASL). IL and AA-L were funded by the Department of Education, Language Policy and Culture of the Basque Government (PRE_2016_1_0152 and PRE_2018_1_0184). OS and SK were funded by the Austrian Science Fund (FWF25801-B22, FWF-P35168 to OS and L-Mac: F 6104-B21 to SK). FO and DAM were funded by a UK Medical Research Council programme Grant MR/R023026/1. DAM was also funded by the CRUK programme grant C18342/A23390, CRUK/AECC/AIRC Accelerator Award A26813 and the MRC MICA programme grant MR/R023026/1. JBA is supported by the Danish Medical Research Council, Danish Cancer Society, Nordisk Foundation, and APM Foundation. CJO’R and PM-G are supported by Marie Sklodowska-Curie Programme and EASL Sheila Sherlock postdoctoral fellowships
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