Probing the relationship between Gram-negative and Gram-positive S1 proteins by sequence analysis

Escherichia coli ribosomal protein S1 is required for the translation initiation of messenger RNAs, in particular when their Shine–Dalgarno sequence is degenerated. Closely related forms of the protein, composed of the same number of domains (six), are found in all Gram-negative bacteria. More distant proteins, generally formed of fewer domains, have been identified, by sequence similarities, in Gram-positive bacteria and are also termed ‘S1 proteins’. However in the absence of functional information, it is generally difficult to ascertain their relationship with Gram-negative S1. In this article, we report the solution structure of the fourth and sixth domains of the E. coli protein S1 and show that it is possible to characterize their β-barrel by a consensus sequence that allows a precise identification of all domains in Gram-negative and Gram-positive S1 proteins. In addition, we show that it is possible to discriminate between five domain types corresponding to the domains 1, 2, 3, 4–5 and 6 of E. coli S1 on the basis of their sequence. This enabled us to identify the nature of the domains present in Gram-positive proteins and, subsequently, to probe the filiations between all forms of S1

HARPO: a TPC as a gamma-ray telescope and polarimeter

A gas Time Projection Chamber can be used for gamma-ray astronomy with excellent angular-precision and sensitivity to faint sources, and for polarimetry, through the measurement of photon conversion to $e^+e^-$ pairs. We present the expected performance in simulations and the recent development of a demonstrator for tests in a polarized photon beam.Comment: SPIE Astronomical Telescopes + Instrumentation, Ultraviolet to gamma ray, Montr\'eal, Canada 2014. v2: note added in proof. Copyright 2014 SPIE. One print or electronic copy may be made for personal use only. Systematic reproduction and distribution, duplication of any material in this paper for a fee or for commercial purposes, or modification of the content of the paper are prohibite

Etude structurale par RMN de peptides et proteines du systeme vasoregulateur

SIGLEAvailable from INIST (FR), Document Supply Service, under shelf-number : T 84820 / INIST-CNRS - Institut de l'Information Scientifique et TechniqueFRFranc

New Insights in Thrombin Inhibition Structure–Activity Relationships by Characterization of Octadecasaccharides from Low Molecular Weight Heparin

Low Molecular Weight Heparins (LMWH) are complex anticoagulant drugs that mainly inhibit the blood coagulation cascade through indirect interaction with antithrombin. While inhibition of the factor Xa is well described, little is known about the polysaccharide structure inhibiting thrombin. In fact, a minimal chain length of 18 saccharides units, including an antithrombin (AT) binding pentasaccharide, is mandatory to form the active ternary complex for LMWH obtained by alkaline β-elimination (e.g., enoxaparin). However, the relationship between structure of octadecasaccharides and their thrombin inhibition has not been yet assessed on natural compounds due to technical hurdles to isolate sufficiently pure material. We report the preparation of five octadecasaccharides by using orthogonal separation methods including size exclusion, AT affinity, ion pairing and strong anion exchange chromatography. Each of these octadecasaccharides possesses two AT binding pentasaccharide sequences located at various positions. After structural elucidation using enzymatic sequencing and NMR, in vitro aFXa and aFIIa were determined. The biological activities reveal the critical role of each pentasaccharide sequence position within the octadecasaccharides and structural requirements to inhibit thrombin. Significant differences in potency, such as the twenty-fold magnitude difference observed between two regioisomers, further highlights the importance of depolymerisation process conditions on LMWH biological activity

PEP-RSV: Targeting the replication mechanism of respiratory syncytial virus

National audienc

Disordered, fuzzy and sticky: NMR insights into respiratory syncytial virus phosphoprotein, an adaptor-like protein.

International audienc

The high-energy spectrum of Cygnus X-1 as measured by INTEGRAL

The INTEGRAL satellite observed the binary black hole system Cygnus X-1 on 2003 June 7 11. The source was detected up to 800 keV, its spectrum beeing compatible with a power law of photon index 2.3. In the framework of the accreting black hole phenomenology, the source was in an unusual state, probably the so-called “intermediate state”. Using the results of the analysis performed on these INTEGRAL data, we present here the spectral properties of our observations over the whole energy range covered by the high-energy instruments on board INTEGRAL. We then compare them with those obtained from earlier observations of Cygnus X-1 performed during the INTEGRAL performance and verification phase in the fall of 2002. At that time, the source was found in the low/hard state, indicating that Cygnus X-1 underwent a transition towards a softer state in 2003 June. We discuss the spectral parameters obtained from a Comptonization model

Prediction of the calcium carbonate budget in a sedimentary basin: a "source-to-sink" approach applied to Great Salt Lake, Utah, USA.

30 pagesInternational audienceMost source‐to‐sink studies typically focus on the dynamics of clastic sediments and consider erosion, transport and deposition of sediment particles as the sole contributors. Although often neglected, dissolved solids produced by weathering processes contribute significantly in the sedimentary dynamics of basins, supporting chemical and/or biological precipitation. Calcium ions are usually a major dissolved constituent of water drained through the watershed and may facilitate the precipitation of calcium carbonate when supersaturating conditions are reached. The high mobility of Ca2+ ions may cause outflow from an open system and consequently loss. In contrast, in closed basins, all dissolved (i.e. non‐volatile) inputs converge at the lowest point of the basin. The endoreic Great Salt Lake basin constitutes an excellent natural laboratory to study the dynamics of calcium on a basin scale, from the erosion and transport through the watershed to the sink, including sedimentation in lake's waterbody. The current investigation focused on the Holocene epoch. Despite successive lake level fluctuations (amplitude around 10 m), the average water level seems to have not been affected by any significant long‐term change (i.e. no increasing or decreasing trend, but fairly stable across the Holocene). Weathering of calcium‐rich minerals in the watershed mobilizes Ca2+ ions that are transported by surface streams and subsurface flow to the Great Salt Lake (GSL). Monitoring data of these flows was corrected for recent anthropogenic activity (river management) and combined with direct precipitation (i.e. rain and snow) and atmospheric dust income into the lake, allowing estimating the amount of calcium delivered to the GSL. These values were then extrapolated through the Holocene period and compared to the estimated amount of calcium stored in GSL water column, porewater and sediments (using hydrochemical, mapping, coring and petrophysical estimates). The similar estimate of calcium delivered (4.88 Gt) and calcium stored (3.94 Gt) is consistent with the premise of the source‐to‐sink approach: a mass balance between eroded and transported compounds and the sinks. The amount of calcium deposited in the basin can therefore be predicted indirectly from the different inputs, which can be assessed with more confidence. When monitoring is unavailable (e.g. in the fossil record), the geodynamic context, the average lithology of the watershed and the bioclimatic classification of an endoreic basin are alternative properties that may be used to estimate the inputs. We show that this approach is sufficiently accurate to predict the amount of calcium captured in a basin and can be extended to the whole fossil record and inform on the storage of calcium