Aerial abundance estimates for two sympatric dolphin species at a regional scale using distance sampling and density surface modeling

Monitoring wildlife populations over scales relevant to management is critical to supporting conservation decision-making in the face of data deficiency, particularly for rare species occurring across large geographic ranges. The Pilbara region of Western Australia is home to two sympatric and morphologically similar species of coastal dolphins—the Indo-pacific bottlenose dolphin (Tursiops aduncus) and Australian humpback dolphin (Sousa sahulensis)—both of which are believed to be declining in numbers and facing increasing pressures from the combined impacts of environmental change and extensive industrial activities. The aim of this study was to develop spatially explicit models of bottlenose and humpback dolphin abundance in Pilbara waters that could inform decisions about coastal development at a regional scale. Aerial line transect surveys were flown from a fixed-wing aircraft in the austral winters of 2015, 2016, and 2017 across a total area of 33,420 km2. Spatio-temporal patterns in dolphin density were quantified using a density surface modeling (DSM) approach, accounting for imperfect detection as well as both perception and availability bias. We estimated the abundance of bottlenose dolphins at 3,713 (95% CI = 2,679–5,146; average density of 0.189 ± 0.046 SD individuals per km2) in 2015, 2,638 (95% CI = 1,670–4,168; 0.159 ± 0.135 individuals per km2) in 2016 and 1,635 (95% CI = 1,031–2,593; 0.101 ± 0.103 individuals per km2) in 2017. Too few humpback dolphins were detected in 2015 to model abundance, but their estimated abundance was 1,546 (95% CI = 942–2,537; 0.097 ± 0.03 individuals per km2) and 2,690 (95% CI = 1,792–4,038; 0.169 ± 0.064 individuals per km2) in 2016 and 2017, respectively. Dolphin densities were greatest in nearshore waters, with hotspots in Exmouth Gulf, the Dampier Archipelago, and Great Sandy Islands. Our results provide a benchmark on which future risk assessments can be based to better understand the overlap between pressures and important dolphin habitats in tropical northwestern Australia

First underwater sighting of Shepherd’s beaked whale (Tasmacetus shepherdi)

Here we describe the first underwater sighting of Shepherd’s beaked whale (Tasmacetus shepherdi). Two individuals were observed together on video footage obtained via mid-water stereo-Baited Remote Underwater Video Systems (BRUVS) deployed off the coast of Inaccessible Island, Tristan da Cunha, in the South Atlantic. This observation constitutes the first recorded live sighting of this species in the waters of Tristan da Cunha since 2002 and provides further evidence for the persistence of a population of this species in the region. The observed individuals lacked the dark flipper stripe observed in previous descriptions, indicating that the species may exhibit greater variation in pigmentation than previous records indicate. The planned implementation of a marine reserve in the region along with the current low level of fishing pressure and remote location of this archipelago provide a good context to ensure the appropriate management and protection of this rare species. The recent establishment of an ongoing mid-water stereo-BRUVS monitoring programme, in concert with other methods targeted at marine mammals, may yield further information about this little known species and aid in informing management decisions in the future.Publisher PDFPeer reviewe

Submerged carbonate banks aggregate pelagic megafauna in offshore tropical Australia

This research was undertaken for the Marine Biodiversity Hub, a collaborative partnership supported through funding from the Australian Government’s National Environmental Research Program (NERP). PB was the recipient of a scholarship for international fees during the course of this work. SN publishes with permission of the Chief Executive Officer, Geoscience Australia.The conservation of marine biodiversity is firmly embedded in national and international policy frameworks. However, the difficulties associated with conducting broad-scale surveys of oceanic environments restrict the evidence base available for applied management in pelagic waters. For example, the Oceanic Shoals Australian Marine Park (AMP) was established in 2012 in a part of Australia’s continental shelf where unique topographic features are thought to support significant levels of biodiversity, yet where our understanding of ecological processes remains limited. We deployed mid-water baited remote underwater video systems (mid-water BRUVS) in the Oceanic Shoals AMP to provide the first non-extractive baseline assessment of pelagic wildlife communities in the area. We used these observations and high-resolution multibeam swaths of the seafloor to explore potential relationships between prominent geomorphological features and the (i) composition, (ii) richness, and (iii) relative abundance of pelagic communities. We documented 32 vertebrate species across three sampling areas, ranging from small baitfish to large sharks and rays, and estimated that up to nearly twice as many taxa may occur within the region as a whole. This highlights the Oceanic Shoals AMP as a reservoir of biodiversity comparable to other documented offshore oceanic hotspots. Our results also confirm the AMP as a possible distant foraging destination for IUCN red listed sea turtles, and a potential breeding and/or nursing ground for a number of charismatic cetaceans. Model outputs indicate that both species richness and abundance increase in proximity to raised geomorphic structures such as submerged banks and pinnacles, highlighting the influence of submarine topography on megafauna distribution. By providing a foundational understanding of spatial patterns in pelagic wildlife communities throughout a little studied region, our work demonstrates how a combination of non-destructive sampling techniques and predictive models can provide new opportunities to support decision-making under data shortage.Publisher PDFPeer reviewe

Physiological response of the coralline alga Corallina officinalis L. to both predicted long-term increases in temperature and short-term heatwave events

This work was supported by the European Cooperation in Science and Technology (COST) within the COST Action CA15121, advancing marine conservation in the European and contiguous seas (MarCons).Climate change is leading to an increase of mean sea surface temperatures and extreme heat events. There is an urgent need to better understand the capabilities of marine macroalgae to adapt to these rapid changes. In this study, the responses of photosynthesis, respiration, and calcification to elevated temperature in a global warming scenario were investigated in the coralline alga Corallina officinalis. Algae were cultured for 7 weeks under 4 temperature treatments: (1) control under ambient-summer conditions (C, ∼20 °C), (2) simulating a one-week heatwave of 1 °C (HW, Tcontrol+1 °C), (3) elevated temperature (+3, Tcontrol +3 °C), (4) combination of the two previous treatments (HW+3, T+3+1 °C). After exposure at T+3 (up to a Tmax of ∼23 °C), respiration and photosynthesis increased significantly. After 5 weeks, calcification rates were higher at elevated temperatures (T+3 and THW+3) compared to Tcontrol, but at the end of the experiment (7 weeks) calcification decreased significantly at those temperatures beyond the thermal optimum (six-fold at T+3, and three-fold at THW+3, respectively). The same trend was noted for all the physiological processes, suggesting that a prolonged exposure to high temperatures (7 weeks up to T+3) negatively affect the physiology of C. officinalis, as a possible consequence of thermal stress. A one-week heatwave of +1 °C with respect to Tcontrol (at THW) did not affect respiration, photosynthesis, or calcification rates. Conversely, a heatwave of 1 °C, when combined with the 3 °C increase predicted by the end of the century (at THW+3), induced a reduction of physiological rates. Continued increases in both the intensity and frequency of heatwaves under anthropogenic climate change may lead to reduced growth and survival of primary producers such as C. officinalis.PostprintPeer reviewe

Shipping in the north-east Atlantic : identifying spatial and temporal patterns of change

This work was supported by a faculty PhD bursary from the University of Portsmouth. Work was supported by the Marine Ecosystems Research Programme.Maritime traffic is increasing globally, with a four-fold increase in commercial vessel movements between 1992 and 2012. Vessels contribute to noise and air pollution, provide pathways for non-native species, and collide with marine wildlife. While knowledge of shipping trends and potential environmental impacts exists at both local and global levels, key information on vessel density for regional-scale management is lacking. This study presents the first in-depth spatio-temporal analysis of shipping in the north-east Atlantic region, over three years in a five-year period. Densities increased by 34%, including in 73% of Marine Protected Areas. Western Scotland and the Bay of Biscay experienced the largest increases in vessel density, predominantly from small and slow vessels. Given well-documented impacts that shipping can have on the marine environment, it is crucial that this situation continues to be monitored – particularly in areas designated to protect vulnerable species and ecosystems which may already be under pressure.Publisher PDFPeer reviewe

Preliminary estimates of the abundance and fidelity of dolphins associating with a demersal trawl fishery

The incidental capture of wildlife in fishing gear presents a global conservation challenge. As a baseline to inform assessments of the impact of bycatch on bottlenose dolphins (Tursiops truncatus) interacting with an Australian trawl fishery, we conducted an aerial survey to estimate dolphin abundance across the fishery. Concurrently, we carried out boat-based dolphin photo-identification to assess short-term fidelity to foraging around trawlers, and used photographic and genetic data to infer longer-term fidelity to the fishery. We estimated abundance at approximate to 2,300 dolphins (95% CI = 1,247-4,214) over the ≈ 25,880-km2 fishery. Mark-recapture estimates yielded 226 (SE = 38.5) dolphins associating with one trawler and some individuals photographed up to seven times over 12 capture periods. Moreover, photographic and genetic re-sampling over three years confirmed that some individuals show longterm fidelity to trawler-associated foraging. Our study presents the first abundance estimate for any Australian pelagic dolphin community and documents individuals associating with trawlers over days, months and years. Without trend data or correction factors for dolphin availability, the impact of bycatch on this dolphin population's conservation status remains unknown. These results should be taken into account by management agencies assessing the impact of fisheries-related mortality on this protected species.Publisher PDFPeer reviewe

A standard protocol for reporting species distribution models

Species distribution models (SDMs) constitute the most common class of models across ecology, evolution and conservation. The advent of ready-to-use software packages and increasing availability of digital geoinformation have considerably assisted the application of SDMs in the past decade, greatly enabling their broader use for informing conservation and management, and for quantifying impacts from global change. However, models must be fit for purpose, with all important aspects of their development and applications properly considered. Despite the widespread use of SDMs, standardisation and documentation of modelling protocols remain limited, which makes it hard to assess whether development steps are appropriate for end use. To address these issues, we propose a standard protocol for reporting SDMs, with an emphasis on describing how a study's objective is achieved through a series of modeling decisions. We call this the ODMAP (Overview, Data, Model, Assessment and Prediction) protocol, as its components reflect the main steps involved in building SDMs and other empirically-based biodiversity models. The ODMAP protocol serves two main purposes. First, it provides a checklist for authors, detailing key steps for model building and analyses, and thus represents a quick guide and generic workflow for modern SDMs. Second, it introduces a structured format for documenting and communicating the models, ensuring transparency and reproducibility, facilitating peer review and expert evaluation of model quality, as well as meta-analyses. We detail all elements of ODMAP, and explain how it can be used for different model objectives and applications, and how it complements efforts to store associated metadata and define modelling standards. We illustrate its utility by revisiting nine previously published case studies, and provide an interactive web-based application to facilitate its use. We plan to advance ODMAP by encouraging its further refinement and adoption by the scientific community

High angular resolution ALMA images of dust and molecules in the SN 1987A ejecta

We present high angular resolution (~80 mas) ALMA continuum images of the SN 1987A system, together with CO J = 2 $\to$ 1, J = 6 $\to$ 5, and SiO J = 5 $\to$ 4 to J = 7 $\to$ 6 images, which clearly resolve the ejecta (dust continuum and molecules) and ring (synchrotron continuum) components. Dust in the ejecta is asymmetric and clumpy, and overall the dust fills the spatial void seen in Hα images, filling that region with material from heavier elements. The dust clumps generally fill the space where CO J = 6 $\to$ 5 is fainter, tentatively indicating that these dust clumps and CO are locationally and chemically linked. In these regions, carbonaceous dust grains might have formed after dissociation of CO. The dust grains would have cooled by radiation, and subsequent collisions of grains with gas would also cool the gas, suppressing the CO J = 6 $\to$ 5 intensity. The data show a dust peak spatially coincident with the molecular hole seen in previous ALMA CO J = 2 $\to$ 1 and SiO J = 5 $\to$ 4 images. That dust peak, combined with CO and SiO line spectra, suggests that the dust and gas could be at higher temperatures than the surrounding material, though higher density cannot be totally excluded. One of the possibilities is that a compact source provides additional heat at that location. Fits to the far-infrared–millimeter spectral energy distribution give ejecta dust temperatures of 18–23 K. We revise the ejecta dust mass to M dust = 0.2–0.4 ${M}_{\odot }$ for carbon or silicate grains, or a maximum of <0.7 ${M}_{\odot }$ for a mixture of grain species, using the predicted nucleosynthesis yields as an upper limit

A field and video-annotation guide for baited remote underwater stereo-video surveys of demersal fish assemblages

Researchers TL, BG, JW, NB and JM were supported by the Marine Biodiversity Hub through funding from the Australian Government's National Environmental Science Program. Data validation scripts and GlobalArchive.org were supported by the Australian Research Data Commons, the Gorgon-Barrow Island Gorgon Barrow Island Net Conservation Benefits Fund, administered by the Government of Western Australia and the BHP/UWA Biodiversity and Societal Benefits of Restricted Access Areas collaboration.1. Baited remote underwater stereo-video systems (stereo-BRUVs) are a popular tool to sample demersal fish assemblages and gather data on their relative abundance and body-size structure in a robust, cost-effective, and non-invasive manner. Given the rapid uptake of the method, subtle differences have emerged in the way stereo-BRUVs are deployed and how the resulting imagery are annotated. These disparities limit the interoperability of datasets obtained across studies, preventing broad-scale insights into the dynamics of ecological systems. 2. We provide the first globally accepted guide for using stereo-BRUVs to survey demersal fish assemblages and associated benthic habitats. 3. Information on stereo-BRUV design, camera settings, field operations, and image annotation are outlined. Additionally, we provide links to protocols for data validation, archiving, and sharing. 4. Globally, the use of stereo-BRUVs is spreading rapidly. We provide a standardised protocol that will reduce methodological variation among researchers and encourage the use of Findable, Accessible, Interoperable, and Reproducible (FAIR) workflows to increase the ability to synthesise global datasets and answer a broad suite of ecological questions.Publisher PDFPeer reviewe