The SPAN cookbook: A practical guide to accessing SPAN

This is a manual for remote users who wish to send electronic mail messages from the Space Physics Analysis Network (SPAN) to scientific colleagues on other computer networks and vice versa. In several instances more than one gateway has been included for the same network. Users are provided with an introduction to each network listed with helpful details about accessing the system and mail syntax examples. Also included is information on file transfers, remote logins, and help telephone numbers

Approaches to Managing and Collecting Born-Digital Literary Materials for Scholarly Use

Digital Humanities Initiative Level 1 Start Up funding is requested to support a series of site visits and planning meetings among personnel working with the born-digital components of three significant collections of literary material: the Salman Rushdie papers at Emory University's Woodruff Library, the Michael Joyce Papers at the Harry Ransom Humanities Research Center at the University of Texas at Austin, and the Deena Larsen Collection at the Maryland Institute for Technology in the Humanities (MITH) at the University of Maryland. The meetings and site visits will facilitate the preparation of a larger collaborative grant proposal among the three institutions aimed at developing archival tools and best practices for preserving and curating the born-digital documents and records of contemporary authorship. Initial findings will be made available through a jointly authored and publicly distributed online white paper, as well as conference presentations at relevant venues

Partnering for Quail in South Carolina: A Cooperative Approach Making a Difference

The National Bobwhite Conservation Initiative (NBCI) identified 15 national quail focal areas throughout the distribution of the northern bobwhite (Colinus virginianus) in June 2016. The first NBCI Focal Area on U.S. Forest Service System land emerged from the existing 16,200-hectare Indian Creek Woodland and Savanna Restoration Initiative (ICWSRI). The ICWSRI is an ongoing collaborative project involving partners from 10 agencies and organizations in the Piedmont of South Carolina. Cooperation among federal and state agencies, non-governmental organizations (NGO), and private landowners, combined with assistance programs such as the Environmental Quality Incentives Program (EQIP) have currently resulted in 2,547 hectares (1,600 hectares on private land and 947 hectares on public land) of improved habitat for wildlife species associated with pine woodlands and savannas. Data obtained through the Breeding Bird Survey, spring whistle counts, and fall covey counts suggest a correlation between woodland and savanna restoration and avian response across the ICWSRI area. Fall covey count minimum population estimates (birds/ha) ranged from 1/38 in 2008 to 1/7 in 2016. Spring whistle count population density estimates (birds/ha) ranged from 1/37 in 2009 to 1/6 in 2012. Although monitoring suggests an initial increase in bobwhite densities across the project area, it is imperative to continue involving existing and additional partners to increase habitat availability, connectivity, and quality for bobwhite and associated species. Collaborative efforts and partnerships across ownership boundaries are necessary to increase bobwhite populations on a landscape scale. The Indian Creek project has effectively involved efforts from federal, state, NGO, and private partners to restore and improve bobwhite habitat and may serve as an example for other areas where incorporating a cooperative approach could positively influence bobwhite populations

Identification of the mechanisms that drive the toxicity of TiO2 particulates: the contribution of physicochemical characteristics

This review focuses on outlining the toxicity of titanium dioxide (TiO₂) particulates in vitro and in vivo, in order to understand their ability to detrimentally impact on human health. Evaluating the hazards associated with TiO₂ particles is vital as it enables risk assessments to be conducted, by combining this information with knowledge on the likely exposure levels of humans. This review has concentrated on the toxicity of TiO₂, due to the fact that the greatest number of studies by far have evaluated the toxicity of TiO₂, in comparison to other metal oxide particulates. This derives from historical reasons (whereby the size dependency of particulate toxicity was first realised for TiO₂) and due to its widespread application within consumer products (such as sunscreens). The pulmonary and dermal hazards of TiO₂ have been a particular focus of the available studies, due to the past use of TiO₂ as a (negative) control when assessing the pulmonary toxicity of particulates, and due to its incorporation within consumer products such as sunscreens. Mechanistic processes that are critical to TiO₂ particulate toxicity will also be discussed and it is apparent that, in the main, the oxidant driven inflammatory, genotoxic and cytotoxic consequences associated with TiO₂ exposure, are inherently linked, and are evident both in vivo and in vitro. The attributes of TiO₂ that have been identified as being most likely to drive the observed toxicity include particle size (and therefore surface area), crystallinity (and photocatalytic activity), surface chemistry, and particle aggregation/agglomeration tendency. The experimental set up also influences toxicological outcomes, so that the species (or model) used, route of exposure, experiment duration, particle concentration and light conditions are all able to influence the findings of investigations. In addition, the applicability of the observed findings for particular TiO₂ forms, to TiO₂ particulates in general, requires consideration. At this time it is inappropriate to consider the findings for one TiO₂ form as being representative for TiO₂ particulates as a whole, due to the vast number of available TiO₂ particulate forms and large variety of potential tissue and cell targets that may be affected by exposure. Thus emphasising that the physicochemical characteristics are fundamental to their toxicity

TeV Particle Astrophysics II: Summary comments

A unifying theme of this conference was the use of different approaches to understand astrophysical sources of energetic particles in the TeV range and above. In this summary I review how gamma-ray astronomy, neutrino astronomy and (to some extent) gravitational wave astronomy provide complementary avenues to understanding the origin and role of high-energy particles in energetic astrophysical sources.Comment: 6 pages, 4 figures; Conference summary talk for "TeV Particle Astrophysics II" at University of Wisconsin, Madison, 28-31 August 200

Red Queen Dynamics with Non-Standard Fitness Interactions

Antagonistic coevolution between hosts and parasites can involve rapid fluctuations of genotype frequencies that are known as Red Queen dynamics. Under such dynamics, recombination in the hosts may be advantageous because genetic shuffling can quickly produce disproportionately fit offspring (the Red Queen hypothesis). Previous models investigating these dynamics have assumed rather simple models of genetic interactions between hosts and parasites. Here, we assess the robustness of earlier theoretical predictions about the Red Queen with respect to the underlying host-parasite interactions. To this end, we created large numbers of random interaction matrices, analysed the resulting dynamics through simulation, and ascertained whether recombination was favoured or disfavoured. We observed Red Queen dynamics in many of our simulations provided the interaction matrices exhibited sufficient ‘antagonicity’. In agreement with previous studies, strong selection on either hosts or parasites favours selection for increased recombination. However, fast changes in the sign of linkage disequilibrium or epistasis were only infrequently observed and do not appear to be a necessary condition for the Red Queen hypothesis to work. Indeed, recombination was often favoured even though the linkage disequilibrium remained of constant sign throughout the simulations. We conclude that Red Queen-type dynamics involving persistent fluctuations in host and parasite genotype frequencies appear to not be an artefact of specific assumptions about host-parasite fitness interactions, but emerge readily with the general interactions studied here. Our results also indicate that although recombination is often favoured, some of the factors previously thought to be important in this process such as linkage disequilibrium fluctuations need to be reassessed when fitness interactions between hosts and parasites are complex

Multi-compartment profiling of cacterial and host metabolites identifies intestinal dysbiosis and its functional consequences in the critically ill child

Adverse physiology and antibiotic exposure devastate the intestinal microbiome in critical illness. Time and cost implications limit the immediate clinical potential of microbial sequencing to identify or treat intestinal dysbiosis. Here, we examined whether metabolic profiling is a feasible method of monitoring intestinal dysbiosis in critically ill children. Prospective multicenter cohort study. Three U.K.-based PICUs. Mechanically ventilated critically ill (n = 60) and age-matched healthy children (n = 55). Collection of urine and fecal samples in children admitted to the PICU. A single fecal and urine sample was collected in healthy controls. Untargeted and targeted metabolic profiling using 1H-nuclear magnetic resonance spectroscopy and liquid chromatography-mass spectrometry or urine and fecal samples. This was integrated with analysis of fecal bacterial 16S ribosomal RNA profiles and clinical disease severity indicators. We observed separation of global urinary and fecal metabolic profiles in critically ill compared with healthy children. Urinary excretion of mammalian-microbial co-metabolites hippurate, 4-cresol sulphate, and formate were reduced in critical illness compared with healthy children. Reduced fecal excretion of short-chain fatty acids (including butyrate, propionate, and acetate) were observed in the patient cohort, demonstrating that these metabolites also distinguished between critical illness and health. Dysregulation of intestinal bile metabolism was evidenced by increased primary and reduced secondary fecal bile acid excretion. Fecal butyrate correlated with days free of intensive care at 30 days (r = 0.38; p = 0.03), while urinary formate correlated inversely with vasopressor requirement (r = -0.2; p = 0.037). Disruption to the functional activity of the intestinal microbiome may result in worsening organ failure in the critically ill child. Profiling of bacterial metabolites in fecal and urine samples may support identification and treatment of intestinal dysbiosis in critical illness.This is an open access article distributed under the Creative Commons Attribution License 4.0 (CCBY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited