G-300: The first French Getaway Special microgravity measurements of fluid thermal conductivity

Thermal conductivity measurements on liquids are difficult to perform on Earth because of thermal motions due to convection. In microgravity, the convection due to buoyancy is evanescent, and a strong reduction of Rayleigh and Nusselt numbers can be expected. Three low viscosity liquids are selected to carry out the measurements; distilled water (standard) and two silicone oils. A modified hot plate method with a simplified guard ring is used; the reduction of convective motions permitted the use in the experimental cells of larger interplate distances and/or temperature differences than in Earth measurements, improving the accuracy. Comparisons between Earth and orbit results may help to understand the convection occurrence in the cells. Thermal, vibrational, and EMI tests have proved that the design satisfies the NASA requirements

Long-term effectiveness of a multifaceted intervention on pain management in a walk-in clinic

Background: Pain is a common complaint of patients attending walk-in clinics, but timely and appropriate pain management is often lacking. Aim: To evaluate the impact of a multifaceted intervention on pain management. Design: Prospective interventional study. Methods: Three cross-sectional surveys were conducted: before, 4 months after and 14 months after a multifaceted intervention at the medical walk-in clinic of a university hospital. The intervention included both educational activities and structural changes. Use of recommended pain management procedures, pain relief and overall assessments of pain treatment and health professionals' attitudes were assessed using patient questionnaires, collected by mail. History of pain, records of pain intensity and use of pain medication were extracted from medical files. Results: We analysed 1409 medical files and 695 questionnaires of patients presenting with pain. Documentation of pain intensity and administration of pain medication at the walk-in clinic improved significantly 14 months after the intervention (7% vs. 53% and 17% vs. 27%, respectively, p < 0.001) and pain medication was more often administered by the oral route (14% vs. 23%, p < 0.001). However, no change was observed for complete pain relief (40% vs. 39%, p = 0.92) or patients' overall assessments of pain management. Discussion: The intervention improved adherence to recommended procedures, even in the longer term, but did not result in better patient outcomes. Continuing efforts are needed to help health professionals improve pain management in out-patient car

IDA: An implicit, parallelizable method for calculating drainage area

Models of landscape evolution or hydrological processes typically depend on the accurate determination of upslope drainage area from digital elevation data, but such calculations can be very computationally demanding when applied to high-resolution topographic data. To overcome this limitation, we propose calculating drainage area in an implicit, iterative manner using linear solvers. The basis of this method is a recasting of the flow routing problem as a sparse system of linear equations, which can be solved using established computational techniques. This approach is highly parallelizable, enabling data to be spread over multiple computer processors. Good scalability is exhibited, rendering it suitable for contemporary high-performance computing architectures with many processors, such as graphics processing units (GPUs). In addition, the iterative nature of the computational algorithms we use to solve the linear system creates the possibility of accelerating the solution by providing an initial guess, making the method well suited to iterative calculations such as numerical landscape evolution models. We compare this method with a previously proposed parallel drainage area algorithm and present several examples illustrating its advantages, including a continent-scale flow routing calculation at 3 arc sec resolution, improvements to models of fluvial sediment yield, and acceleration of drainage area calculations in a landscape evolution model. We additionally describe a modification that allows the method to be used for parallel basin delineation.National Science Foundation (U.S.). Geomorphology and Land-Use Dynamics Program (Award EAR-0951672

HIV-1 VPR impairs cell growth through the inactivation of two genetically distinct host cell proteins

International audiencen.

Heun Functions and the energy spectrum of a charged particle on a sphere under magnetic field and Coulomb force

We study the competitive action of magnetic field, Coulomb repulsion and space curvature on the motion of a charged particle. The three types of interaction are characterized by three basic lengths: l_{B} the magnetic length, l_{0} the Bohr radius and R the radius of the sphere. The energy spectrum of the particle is found by solving a Schr\"odinger equation of the Heun type, using the technique of continued fractions. It displays a rich set of functioning regimes where ratios \frac{R}{l_{B}} and \frac{R}{l_{0}} take definite values.Comment: 12 pages, 5 figures, accepted to JOPA, november 200

Ambiguity Coding Allows Accurate Inference of Evolutionary Parameters from Alignments in an Aggregated State-Space

How can we best learn the history of a protein’s evolution? Ideally, a model of sequence evolution should capture both the process that generates genetic variation and the functional constraints determining which changes are fixed. However, in practical terms the most suitable approach may simply be the one that combines the convenience of easily available input data with the ability to return useful parameter estimates. For example, we might be interested in a measure of the strength of selection (typically obtained using a codon model) or an ancestral structure (obtained using structural modelling based on inferred amino acid sequence and side chain configuration). But what if data in the relevant state-space are not readily available? We show that it is possible to obtain accurate estimates of the outputs of interest using an established method for handling missing data. Encoding observed characters in an alignment as ambiguous representations of characters in a larger state-space allows the application of models with the desired features to data that lack the resolution that is normally required. This strategy is viable because the evolutionary path taken through the observed space contains information about states that were likely visited in the “unseen” state-space. To illustrate this, we consider two examples with amino acid sequences as input. We show that ω, a parameter describing the relative strength of selection on non-synonymous and synonymous changes, can be estimated in an unbiased manner using an adapted version of a standard 61-state codon model. Using simulated and empirical data, we find that ancestral amino acid side chain configuration can be inferred by applying a 55-state empirical model to 20-state amino acid data. Where feasible, combining inputs from both ambiguity-coded and fully resolved data improves accuracy. Adding structural information to as few as 12.5% of the sequences in an amino acid alignment results in remarkable ancestral reconstruction performance compared to a benchmark that considers the full rotamer state information. These examples show that our methods permit the recovery of evolutionary information from sequences where it has previously been inaccessible

Iron deficiency intravenous substitution in a Swiss academic primary care division: analysis of practices.

BACKGROUND: Iron deficiency is a common problem in primary care and is usually treated with oral iron substitution. With the recent simplification of intravenous (IV) iron administration (ferric carboxymaltose) and its approval in many countries for iron deficiency, physicians may be inclined to overutilize it as a first-line substitution. OBJECTIVE: The aim of this study was to evaluate iron deficiency management and substitution practices in an academic primary care division 5 years after ferric carboxymaltose was approved for treatment of iron deficiency in Switzerland. METHODS: All patients treated for iron deficiency during March and April 2012 at the Geneva University Division of Primary Care were identified. Their medical files were analyzed for information, including initial ferritin value, reasons for the investigation of iron levels, suspected etiology, type of treatment initiated, and clinical and biological follow-up. Findings were assessed using an algorithm for iron deficiency management based on a literature review. RESULTS: Out of 1,671 patients, 93 were treated for iron deficiency. Median patients' age was 40 years and 92.5% (n=86) were female. The average ferritin value was 17.2 μg/L (standard deviation 13.3 μg/L). The reasons for the investigation of iron levels were documented in 82% and the suspected etiology for iron deficiency was reported in 67%. Seventy percent of the patients received oral treatment, 14% IV treatment, and 16% both. The reasons for IV treatment as first- and second-line treatment were reported in 57% and 95%, respectively. Clinical and biological follow-up was planned in less than two-thirds of the cases. CONCLUSION: There was no clear overutilization of IV iron substitution. However, several steps of the iron deficiency management were not optimally documented, suggesting shortcuts in clinical reasoning

Measuring Galaxy Asymmetries in 3D

One of the commonly used non-parametric morphometric statistics for galaxy profiles and images is the asymmetry statistic. With an eye to current and upcoming large neutral hydrogen (HI) surveys, we develop a 3D version of the asymmetry statistic that can be applied to datacubes. This statistic is more resilient to variations due to the observed geometry than 1D asymmetry measures, and can be successfully applied to lower spatial resolutions (3-4 beams across the galaxy major axis) than the 2D statistic. We have also modified the asymmetry definition from an `absolute difference' version to a `squared difference' version that removes much of the bias due to noise contributions for low signal-to-noise observations. Using a suite of mock asymmetric cubes we show that the background-corrected, squared difference 3D asymmetry statistic can be applied to many marginally resolved galaxies in large wide-area HI surveys such as WALLABY on the Australian SKA Pathfinder (ASKAP).Comment: 14 pages, Accepted to MNRA

Actions of the braid group, and new algebraic proofs of results of Dehornoy and Larue

This article surveys many standard results about the braid group with emphasis on simplifying the usual algebraic proofs. We use van der Waerden's trick to illuminate the Artin-Magnus proof of the classic presentation of the algebraic mapping-class group of a punctured disc. We give a simple, new proof of the Dehornoy-Larue braid-group trichotomy, and, hence, recover the Dehornoy right-ordering of the braid group. We then turn to the Birman-Hilden theorem concerning braid-group actions on free products of cyclic groups, and the consequences derived by Perron-Vannier, and the connections with the Wada representations. We recall the very simple Crisp-Paris proof of the Birman-Hilden theorem that uses the Larue-Shpilrain technique. Studying ends of free groups permits a deeper understanding of the braid group; this gives us a generalization of the Birman-Hilden theorem. Studying Jordan curves in the punctured disc permits a still deeper understanding of the braid group; this gave Larue, in his PhD thesis, correspondingly deeper results, and, in an appendix, we recall the essence of Larue's thesis, giving simpler combinatorial proofs.Comment: 51`pages, 13 figure

Inflammatory response of endothelial cells to a human endogenous retrovirus associated with multiple sclerosis is mediated by TLR4.

The MSRV (multiple sclerosis-associated retrovirus) belongs to the human endogenous retrovirus HERV-W family. The envelope protein originating from the MSRV has been found in most patients with multiple sclerosis (MS). This protein (Env-ms) has pro-inflammatory properties for several types of immune cells and could therefore play a role in MS pathogenesis by promoting the leukocyte diapedesis observed in the central nervous system of patients. Our study aims to analyze the effects of Env-ms on the blood-brain barrier (BBB) at a molecular and functional level. We demonstrate that the recombinant MSRV envelope is able to stimulate several inflammatory parameters in a human BBB in vitro model, the HCMEC/D3 brain endothelial cell line. Indeed, Env-ms induces over-expression of ICAM-1, a major mediator of leukocyte adhesion to endothelial cells, in a dose-dependent manner as well as a strong dose-dependent production of the pro-inflammatory cytokines IL-6 and IL-8. Furthermore, using a silencing approach with siRNAs, we show that Env-ms is recognized via the Toll-like receptor 4 receptor, a pattern recognition receptor of innate immunity present on endothelial cells. We also show, using functional assays, that treatment of brain endothelial cells with Env-ms significantly stimulated the adhesion and the transmigration of activated immune cells through a monolayer of endothelial cells. These findings support the hypothesis that MSRV could be involved in the pathogenesis of MS disease or at least in maintenance of inflammatory conditions, thus fueling the auto-immune disorder. MSRV could also play a role in other chronic inflammatory diseases