Long-Lived Accurate Keypoints in Event Streams

We present a novel end-to-end approach to keypoint detection and tracking in an event stream that provides better precision and much longer keypoint tracks than previous methods. This is made possible by two contributions working together. First, we propose a simple procedure to generate stable keypoint labels, which we use to train a recurrent architecture. This training data results in detections that are very consistent over time. Moreover, we observe that previous methods for keypoint detection work on a representation (such as the time surface) that integrates events over a period of time. Since this integration is required, we claim it is better to predict the keypoints' trajectories for the time period rather than single locations, as done in previous approaches. We predict these trajectories in the form of a series of heatmaps for the integration time period. This improves the keypoint localization. Our architecture can also be kept very simple, which results in very fast inference times. We demonstrate our approach on the HVGA ATIS Corner dataset as well as "The Event-Camera Dataset and Simulator" dataset, and show it results in keypoint tracks that are three times longer and nearly twice as accurate as the best previous state-of-the-art methods. We believe our approach can be generalized to other event-based camera problems, and we release our source code to encourage other authors to explore it

FIREBall-2: advancing TRL while doing proof-of-concept astrophysics on a suborbital platform

Here we discuss advances in UV technology over the last decade, with an emphasis on photon counting, low noise, high efficiency detectors in sub-orbital programs. We focus on the use of innovative UV detectors in a NASA astrophysics balloon telescope, FIREBall-2, which successfully flew in the Fall of 2018. The FIREBall-2 telescope is designed to make observations of distant galaxies to understand more about how they evolve by looking for diffuse hydrogen in the galactic halo. The payload utilizes a 1.0-meter class telescope with an ultraviolet multi-object spectrograph and is a joint collaboration between Caltech, JPL, LAM, CNES, Columbia, the University of Arizona, and NASA. The improved detector technology that was tested on FIREBall-2 can be applied to any UV mission. We discuss the results of the flight and detector performance. We will also discuss the utility of sub-orbital platforms (both balloon payloads and rockets) for testing new technologies and proof-of-concept scientific ideasComment: Submitted to the Proceedings of SPIE, Defense + Commercial Sensing (SI19

Rubella Virus-Associated Cutaneous Granulomatous Disease : a Unique Complication in Immune-Deficient Patients, Not Limited to DNA Repair Disorders

The association of immunodeficiency-related vaccine-derived rubella virus (iVDRV) with cutaneous and visceral granulomatous disease has been reported in patients with primary immunodeficiency disorders (PIDs). The majority of these PID patients with rubella-positive granulomas had DNA repair disorders. To support this line of inquiry, we provide additional descriptive data on seven previously reported patients with Nijmegen breakage syndrome (NBS) (n=3) and ataxia telangiectasia (AT) (n=4) as well as eight previously unreported patients with iVDRV-induced cutaneous granulomas and DNA repair disorders including NBS (n=1), AT (n=5), DNA ligase 4 deficiency (n=1), and Artemis deficiency (n=1). We also provide descriptive data on several previously unreported PID patients with iVDRV-induced cutaneous granulomas including cartilage hair hypoplasia (n=1), warts, hypogammaglobulinemia, immunodeficiency, myelokathexis (WHIM) syndrome (n=1), MHC class II deficiency (n=1), Coronin-1A deficiency (n=1), X-linked severe combined immunodeficiency (X-SCID) (n=1), and combined immunodeficiency without a molecular diagnosis (n=1). At the time of this report, the median age of the patients with skin granulomas and DNA repair disorders was 9years (range 3-18). Cutaneous granulomas have been documented in all, while visceral granulomas were observed in six cases (40%). All patients had received rubella virus vaccine. The median duration of time elapsed from vaccination to the development of cutaneous granulomas was 48months (range 2-152). Hematopoietic cell transplantation was reported to result in scarring resolution of cutaneous granulomas in two patients with NBS, one patient with AT, one patient with Artemis deficiency, one patient with DNA Ligase 4 deficiency, one patient with MHC class II deficiency, and one patient with combined immunodeficiency without a known molecular etiology. Of the previously reported and unreported cases, the majority share the diagnosis of a DNA repair disorder. Analysis of additional patients with this complication may clarify determinants of rubella pathogenesis, identify specific immune defects resulting in chronic infection, and may lead to defect-specific therapies.Peer reviewe

Study of the transcriptome of human endogenous retroviruses and functional implications : applications to the search for diagnostic markers of cancers

Le génome humain contient environ 200 000 séquences d'origine rétrovirale (HERV), intégrées au fil de l'évolution et organisées aujourd'hui en familles multicopies complexes globalement réprimées par un contrôle épigénétique. L'étude du transcriptome HERV au niveau locus est compliquée par les similarités phylogénétiques au sein d'une famille et par la profusion des sites d'intégration, deux propriétés inhérentes aux éléments transposables. Dans ce travail, nous avons utilisé une méthode de conception de sondes de détection de 25 mer afin d'adresser la question de l'expression individuelle des HERV. Une puce à ADN haute densité intégrant plus de 5 500 séquences HERV et permettant une lecture fonctionnelle de l'activité de leurs LTRs a été utilisée sur un panel de tissus sains et cancéreux. Cela a permis d'identifier 1 718 séquences HERV actives, dont 326 LTRs promotrices et 209 LTRs polyA. L’étude de l’environnement génomique a mis en évidence une fenêtre d’environ 8 kb en amont des LTRs promotrices, caractérisée par une sous-représentation en gènes cellulaires en orientation sens. Nous avons également montré que le transcriptome des rétrovirus endogènes humains suit des règles de tropisme d’expression, qu’il est sensible aux états de différenciation cellulaire et qu’il ne semble pas être corrélé à l’âge des familles. Une première tentative d’exploitation de ce répertoire HERV dans un contexte clinique a visé à rechercher de nouveaux marqueurs diagnostiques du cancer de la prostate à partir de prélèvements urinaires, par la réalisation d’une étude pilote sur 45 patientsThe human genome contains around 200,000 endogenous retroviral sequences (HERV) integrated during the evolution and which are nowadays organized into complex multicopy families, globally repressed by epigenetic control. The study of the HERV transcriptome at the locus level is complicated by phylogenetic similarities within one family and by the profusion of integration sites, two inherent characteristics of transposable elements. In this work, we used a method aiming to optimally characterize individual loci associated with 25 mer probes. A custom microarray dedicated to more than 5,500 HERV sequences and allowing a functional interpretation of the LTRs expression was used on a panel of normal and tumor tissues. We therefore identified 1,718 active HERV sequences, including 326 promoter LTRs and 209 polyA LTRs. The study of the genomic environment has highlighted an approximately 8 kb zone upstream of promoter LTRs characterized by a drastic reduction in sense cellular genes. We also showed that the HERV transcriptome follows tropism rules, is sensitive to the state of cell differentiation and, unexpectedly, seems not to correlate with the age of the families. In a first attempt to use the HERV repertoire in clinical, we sought to identify new markers of prostate cancer from urine samples. This goal was pursued by conducting a pilot study on 45 patient

Étude du transcriptome des rétrovirus endogènes humains et implications fonctionnelles : applications à la recherche de marqueurs diagnostiques de cancers

The human genome contains around 200,000 endogenous retroviral sequences (HERV) integrated during the evolution and which are nowadays organized into complex multicopy families, globally repressed by epigenetic control. The study of the HERV transcriptome at the locus level is complicated by phylogenetic similarities within one family and by the profusion of integration sites, two inherent characteristics of transposable elements. In this work, we used a method aiming to optimally characterize individual loci associated with 25 mer probes. A custom microarray dedicated to more than 5,500 HERV sequences and allowing a functional interpretation of the LTRs expression was used on a panel of normal and tumor tissues. We therefore identified 1,718 active HERV sequences, including 326 promoter LTRs and 209 polyA LTRs. The study of the genomic environment has highlighted an approximately 8 kb zone upstream of promoter LTRs characterized by a drastic reduction in sense cellular genes. We also showed that the HERV transcriptome follows tropism rules, is sensitive to the state of cell differentiation and, unexpectedly, seems not to correlate with the age of the families. In a first attempt to use the HERV repertoire in clinical, we sought to identify new markers of prostate cancer from urine samples. This goal was pursued by conducting a pilot study on 45 patientsLe génome humain contient environ 200 000 séquences d'origine rétrovirale (HERV), intégrées au fil de l'évolution et organisées aujourd'hui en familles multicopies complexes globalement réprimées par un contrôle épigénétique. L'étude du transcriptome HERV au niveau locus est compliquée par les similarités phylogénétiques au sein d'une famille et par la profusion des sites d'intégration, deux propriétés inhérentes aux éléments transposables. Dans ce travail, nous avons utilisé une méthode de conception de sondes de détection de 25 mer afin d'adresser la question de l'expression individuelle des HERV. Une puce à ADN haute densité intégrant plus de 5 500 séquences HERV et permettant une lecture fonctionnelle de l'activité de leurs LTRs a été utilisée sur un panel de tissus sains et cancéreux. Cela a permis d'identifier 1 718 séquences HERV actives, dont 326 LTRs promotrices et 209 LTRs polyA. L’étude de l’environnement génomique a mis en évidence une fenêtre d’environ 8 kb en amont des LTRs promotrices, caractérisée par une sous-représentation en gènes cellulaires en orientation sens. Nous avons également montré que le transcriptome des rétrovirus endogènes humains suit des règles de tropisme d’expression, qu’il est sensible aux états de différenciation cellulaire et qu’il ne semble pas être corrélé à l’âge des familles. Une première tentative d’exploitation de ce répertoire HERV dans un contexte clinique a visé à rechercher de nouveaux marqueurs diagnostiques du cancer de la prostate à partir de prélèvements urinaires, par la réalisation d’une étude pilote sur 45 patient

Étude chez l'Homme et l'animal des conséquences neuromécaniques du bloc moteur à la lidocaïne et comparaison chez l'Homme aux conséquences neuromécaniques de la neurotomie tibiale sélective

COMPIEGNE-BU (601592101) / SudocSudocFranceF

A Comparative Portrait of Retroviral Fusogens and Syncytins

The strongest candidates for developmentally regulated cellular fusogens in mammals are Syncytins which contribute to cell–cell fusion leading to placental syncytiotrophoblast in higher primates, rodents, lagomorphs and sheeps. They consist of domesticated endogenous retroviral envelope glycoproteins (Env) whose fusion properties depend on the initial recognition of a specific receptor. In order to clearly understand Syncytins characteristics, we will first illustrate molecular details characterizing the maturation of class I fusion proteins by introducing envelope-driven fusion in an infectious context, i.e. virus cell fusion, exemplifying each step that lead to functional virions with the most relevant model such as HIV-1 lentivirus or MLV and type D interference group retroviruses. In a second part, we will comparatively present the current knowledge concerning Syncytins and the associated three levels of complexity. First, the placenta is probably more variable in structure than any of the mammalian organs. Second, Syncytins recognize specific and highly function-divergent/unrelated receptors. Third, some Syncytins were shown to exhibit other functions than fusion, such as proliferation, immunomodulation, receptor interference and anti-apoptotic properties. We will conclude by a brief overview of the consequences of Syncytin expression outside of its privileged tissue. KeywordsFusion-placenta-retrovirus-endogenous retrovirus-envelope-Syncytin-enJSRV-receptor-hASCT1-hASCT2-MFSD2-HYAL

Detecting Stable Keypoints from Events through Image Gradient Prediction

International audienceWe present a method that detects stable keypoints from an event stream at high speed with a low memory footprint. Our key observation connects two points: It should be easier to reconstruct the image gradients rather than the image itself from the events, and the Harris corner detector, one of the most reliable keypoint detectors for short baseline regular images, depends on the image gradients, not the image. We therefore introduce a recurrent convolutional neural network to predict image gradients from events. As image gradients and events are correlated, this prediction task is relatively easy and we can keep this network very small. We train our network solely on synthetic data. Extracting Harris corners from these gradients is then very efficient. Moreover, in contrast to learned methods, we can change the hyperparameters of the detector without retraining. Our experiments confirm that predicting image gradients rather than images is much more efficient, and that our approach predicts stable corner points which are easier to track for a longer time compared to state-of-the-art event-based methods

Improved Deschampsia cespitosa growth by nitrogen fertilization jeopardizes Quercus petraea regeneration through intensification of competition

Plant-plant interactions show differential responses to different combinations of available resources that has been underexplored. The short-term functional response of Quercus petraea seedlings and Deschampsia cespitosa tufts grown alone or in mixture was monitored in contrasting combinations of soil inorganic nitrogen x light availabilities in a greenhouse experiment. Growth, biomass allocation, functional traits and resource acquisition were quantified. Intensity and importance of interactions were calculated by organ biomass-based indices. Competition exerted by D. cespitosa on oak was primarily driven by light availability and secondly, for each light level, by nitrogen supply, leading to a strong hierarchy of resource combinations for each considered plant organ. Under high light, oak preferentially allocated biomass to the roots, underlining the indirect role of light on the belowground compartment. Unexpectedly, Deschampsia cespitosa grew better in the presence of oak seedlings under high nitrogen supply whatever the light availability. Oak short-term nitrogen storage instead of investment in growth might be a long-term strategy to survive D. cespitosa competition. Why Deschampsia had a higher biomass in the presence of oak under nitrogen fertilization is an intriguing question. The role of root exudates or change in balance between intra- nu s interspecific interactions may hold the answer. There may be an active mechanism of competition rather than only competitive resource exploitation. Forest managers sometimes practice adding nitrogen fertilizer to improve oak seedling growth in plantations or natural regeneration. Here, the higher biomass in mixture to the benefit of the competitor clearly questions this practice: oak may provide extra nitrogen to competitors during the early period of plant-plant interaction or it may influence the balance between intra- vs interspecific interactions. The identification and quantification of active competition may result in new practices for a broad diversity of plant-plant interactions such as tree regeneration, intercrop management and weed control in agriculture. (C) 2018 Gesellschaft fur Okologie. Published by Elsevier GmbH. All rights reserved