13,685 research outputs found
Using cellular fitness to map the structure and function of a major facilitator superfamily effluxer.
The major facilitator superfamily (MFS) effluxers are prominent mediators of antimicrobial resistance. The biochemical characterization of MFS proteins is hindered by their complex membrane environment that makes in vitro biochemical analysis challenging. Since the physicochemical properties of proteins drive the fitness of an organism, we posed the question of whether we could reverse that relationship and derive meaningful biochemical parameters for a single protein simply from fitness changes it confers under varying strengths of selection. Here, we present a physiological model that uses cellular fitness as a proxy to predict the biochemical properties of the MFS tetracycline efflux pump, TetB, and a family of single amino acid variants. We determined two lumped biochemical parameters roughly describing Km and Vmax for TetB and variants. Including in vivo protein levels into our model allowed for more specified prediction of pump parameters relating to substrate binding affinity and pumping efficiency for TetB and variants. We further demonstrated the general utility of our model by solely using fitness to assay a library of tet(B) variants and estimate their biochemical properties
Microsolvation of heavy halides
The fundamental question of how intermolecular interactions lead to the stabilization of heavy halides (Br−, I−, At−) microsolvated with up to six explicit water molecules is addressed here. An exhaustive exploration of the potential energy surfaces using a random search algorithm followed by optimization of molecular geometries using pseudopotentials and at the full four component relativistic levels of theory, affords a good number of structures with high probabilities of occurrence, highlighting the important role of local minima to reproduce experimentally measured properties. Sequential hydration enthalpies for astatide are reported here for the first time in the scientific literature. Closed shell (ionic, long range) as well as intermediate character interactions (contributions from closed shell and covalent) are at play stabilizing the clusters. The ability of water molecules to either donate or to accept electron density dictates the nature and strength of the corresponding hydrogen bonds in solvation shells. Binding energies and molecular geometries are shown to be more sensitive to electron correlation than to relativistic effects
Transglutaminase-catalyzed site-specific glycosidation of catalase with aminated dextran
An enzymatic approach, based on a transglutaminase-catalyzed coupling reaction, was investigated to modify bovine liver
catalase with an end-group aminated dextran derivative. We demonstrated that catalase activity increased after enzymatic glycosidation
and that the conjugate was 3.8-fold more stable to thermal inactivation at 55 ◦C and 2-fold more resistant to proteolytic
degradation by trypsin. Moreover, the transglutaminase-mediated modification also improved the pharmacokinetics behavior
of catalase, increasing 2.5-fold its plasma half-life time and reducing 3-fold the total clearance after its i.v. administration in
rats
Freshly Formed Dust in the Cassiopeia A Supernova Remnant as Revealed by the Spitzer Space Telescope
We performed Spitzer Infrared Spectrograph mapping observations covering
nearly the entire extent of the Cassiopeia A supernova remnant (SNR), producing
mid-infrared (5.5-35 micron) spectra every 5-10". Gas lines of Ar, Ne, O, Si, S
and Fe, and dust continua were strong for most positions. We identify three
distinct ejecta dust populations based on their continuum shapes. The dominant
dust continuum shape exhibits a strong peak at 21 micron. A line-free map of 21
micron-peak dust made from the 19-23 micron range closely resembles the [Ar
II], [O IV], and [Ne II] ejecta-line maps implying that dust is freshly formed
in the ejecta. Spectral fitting implies the presence of SiO2, Mg
protosilicates, and FeO grains in these regions. The second dust type exhibits
a rising continuum up to 21 micron and then flattens thereafter. This ``weak 21
micron'' dust is likely composed of Al2O3 and C grains. The third dust
continuum shape is featureless with a gently rising spectrum and is likely
composed of MgSiO3 and either Al2O3 or Fe grains. Using the least massive
composition for each of the three dust classes yields a total mass of 0.02
Msun. Using the most-massive composition yields a total mass of 0.054 Msun. The
primary uncertainty in the total dust mass stems from the selection of the dust
composition necessary for fitting the featureless dust as well as 70 micron
flux. The freshly formed dust mass derived from Cas A is sufficient from SNe to
explain the lower limit on the dust masses in high redshift galaxies.Comment: 8 figures: Accepted for the publication in Ap
Lignin-Based Polyols with Controlled Microstructure by Cationic Ring Opening Polymerization
Lignin-based polyols (LBPs) with controlled microstructure were obtained by cationic ring opening polymerization (CROP) of oxiranes in an organosolv lignin (OL) tetrahydrofuran (THF) solution. The control on the microstructure and consequently on the properties of the LBPs such as hydroxyl number, average molecular weight, melting, crystallization and decomposition temperatures, are crucial to determine the performance and application of the derived-products. The influence of key parameters, for example, molar ratio between the oxirane and the hydroxyl groups content in OLO, initial OL concentration in THF, temperature, specific flow rate and oxirane nature has been investigated. LBPs with hydroxyl numbers from 35 to 217 mg KOH/g, apparent average Mw between 5517 and 52,900 g/mol and melting temperatures from −8.4 to 18.4 °C were obtained. The CROP procedure allows obtaining of tailor-made LBPs for specific applications in a very simple way, opening the way to introduce LBPs as a solid alternative to substitute currently used fossil-based polyols.Basque Government (grant KK-2019/00097
The “E3D+VET” Erasmus+ project: Interdisciplinary teaching and learning in VET centres through 3D printing
The "E3D+VET" (Erasmus+ for the immersion in 3D printing of VET centres) is an Erasmus+ KA2 project aimed at developing educational resources for the VET system, providing new competences to both teachers and students and serving as important means of innovation and acquisition of effective knowledge on interdisciplinary STEAM topics. The project started on October 2017 and it will last up to the end of March 2020. In this work, we present the main outcomes from the project activities carried out so far. In particular, after a description of the general objectives of the project, we introduce the methodology developed for making 3D-printing a valuable resource for supporting physics teaching in a highly motivating learning environment and three didactical exercises as examples of 3D-printing based tools that can support teachers in their physics class. As a part of the project plan, here we finally present the preliminary training program specifically designed for the teacher professional development about the knowledge of 3D-printing potential for an effective teaching of physics contents and, at the same time, for improving student transversal abilities
The impact of a large object with Jupiter in July 2009
On 2009 July 19, we observed a single, large impact on Jupiter at a
planetocentric latitude of 55^{\circ}S. This and the Shoemaker-Levy 9 (SL9)
impacts on Jupiter in 1994 are the only planetary-scale impacts ever observed.
The 2009 impact had an entry trajectory opposite and with a lower incidence
angle than that of SL9. Comparison of the initial aerosol cloud debris
properties, spanning 4,800 km east-west and 2,500 km north-south, with those
produced by the SL9 fragments, and dynamical calculations of pre-impact orbit,
indicate that the impactor was most probably an icy body with a size of 0.5-1
km. The collision rate of events of this magnitude may be five to ten times
more frequent than previously thought. The search for unpredicted impacts, such
as the current one, could be best performed in 890-nm and K (2.03-2.36 {\mu}m)
filters in strong gaseous absorption, where the high-altitude aerosols are more
reflective than Jupiter's primary cloud.Comment: 15 pages, 5 figure
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