Intragenic variants in the SMN1 gene determine the clinical phenotype in 5q spinal muscular atrophy

Objective: The aim of the study was to report the proportion of homozygous and compound heterozygous variants in the survival motor neuron 1 (SMN1) gene in a large population of patients with spinal muscular atrophy (SMA) and to correlate the severity of the disease with the presence of specific intragenic variants in SMN1 and with the SMN2 copy number. Methods: Four hundred fifty Brazilian patients with SMA were included in a retrospective study, and clinical data were analyzed compared with genetic data; the SMN2 copy number was obtained by multiplex ligation-dependent probe amplification and pathogenic variants in SMN1 by next-generation sequencing. Results: Four hundred two patients (89.3%) presented homozygous exon 7-SMN1 deletion, and 48 (10.7%) were compound heterozygous for the common deletion in one allele and a point mutation in the other allele. Recurrent variants in exons 3 and 6 (c.460C>T, c.770_780dup and c.734_735insC) accounted for almost 80% of compound heterozygous patients. Another recurrent pathogenic variant was c.5C>G at exon 1. Patients with c.770_780dup and c.734_735insC had a clinical phenotype correlated with SMN2 copy number, whereas the variants c.460C>T and c.5C>G determined a milder phenotype independently of the SMN2 copies. Conclusions Patients with specific pathogenic variants (c.460C>T and c.5C>G) presented a milder phenotype, and the SMN2 copy number did not correlate with disease severity in this group

A Genética na Fibrose Cística

A fibrose cística (FC) é a doença autossômica recessiva mais comum em euro-descendentes, com uma incidência estimada de 1 caso a cada 2.500 nascimentos. A FC é uma doença multissistêmica, caracterizada principalmente por doença pulmonar progressiva, disfunção pancreática exócrina e concentração elevada de eletrólitos no suor. O gene associado a essa doença é denominado CFTR e se localiza no cromossomo 7, sendo dividido em 27 éxons. Até o momento, mais de 1.800 variações de sequência foram identificadas no gene CFTR, sendo que a mutação p.Phe508del é a mais frequente entre os pacientes de FC. No Brasil, a frequência dessa mutação não é tão elevada, devido provavelmente à miscigenação e, consequentemente, o locus CFTR apresenta maior heterogeneidade alélica. A probabilidade de um filho afetado com FC é de 1 em 4, ou 25%, para filhos de um casal em que ambos são portadores de uma mutação.  O risco de um indivíduo com FC ter filhos afetados depende de seu parceiro – se o parceiro for portador da doença o risco será de 50%. Para casais em risco de terem filhos com FC e com mutação ou mutações identificadas, é possível oferecer diagnóstico pré-natal (DPN) e diagnóstico genético pré-implantacional (DPI). Considerando a complexidade da informação genética relacionada à FC e das alternativas reprodutivas que estão surgindo, é muito importante a disponibilização do aconselhamento genético para o paciente e sua família

State biomarkers for Machado Joseph disease : validation, feasibility and responsiveness to change

Machado-Joseph disease (SCA3/MJD) is the most common spinocerebellar ataxia worldwide, and particularly so in Southern Brazil. Due to an expanded polyglutamine at ataxin-3, SCA3/MJD presents a relentless course with no current disease modifying treatment. Clinical scales used to measure SCA3/MJD progression present moderate effect sizes, a major drawback for their use as main outcomes in clinical trials, given the rarity and slow progression of the disease. This limitation might be overcome by finding good surrogate markers. We present here a review of studies on peripheral and neurophysiological markers in SCA3/MJD that can be candidates for state biomarkers. Data on markers already studied were summarized, giving emphasis on validation against clinical scale, and responsiveness to change. While some biological fluid compounds and neurophysiological parameters showed poor responsiveness, others seemed to be good candidates. Some potential candidates that are waiting for responsiveness studies were serum levels of neuron specific enolase, vestibulo-ocular reflex and video-oculography. Candidates evaluated by RNA and microRNA expression levels need further studies to improve their measurements. Data on peripheral levels of Beclin-1 and DNAJB1 are promising but still incipient. We conclude that several potential candidates should follow onto validating studies for surrogate state biomarkers of SCA3/MJD