Using 1st derivative reflectance signatures within a remote sensing framework to identify macroalgae in marine environments

Macroalgae blooms (MABs) are a global natural hazard that are likely to increase in occurrence with climate change and increased agricultural runoff. MABs can cause major issues for indigenous species, fish farms, nuclear power stations, and tourism activities. This project focuses on the impacts of MABs on the operations of a British nuclear power station. However, the outputs and findings are also of relevance to other coastal operators with similar problems. Through the provision of an early-warning detection system for MABs, it should be possible to minimize the damaging effects and possibly avoid them altogether. Current methods based on satellite imagery cannot be used to detect low-density mobile vegetation at various water depths. This work is the first step towards providing a system that can warn a coastal operator 6–8 h prior to a marine ingress event. A fundamental component of such a warning system is the spectral reflectance properties of the problematic macroalgae species. This is necessary to optimize the detection capability for the problematic macroalgae in the marine environment. We measured the reflectance signatures of eight species of macroalgae that we sampled in the vicinity of the power station. Only wavelengths below 900 nm (700 nm for similarity percentage (SIMPER)) were analyzed, building on current methodologies. We then derived 1st derivative spectra of these eight sampled species. A multifaceted univariate and multivariate approach was used to visualize the spectral reflectance, and an analysis of similarities (ANOSIM) provided a species-level discrimination rate of 85% for all possible pairwise comparisons. A SIMPER analysis was used to detect wavebands that consistently contributed to the simultaneous discrimination of all eight sampled macroalgae species to both a group level (535–570 nm), and to a species level (570–590 nm). Sampling locations were confirmed using a fixed-wing unmanned aerial vehicle (UAV), with the collected imagery being used to produce a single orthographic image via standard photogrammetric processes. The waveband found to contribute consistently to group-level discrimination has previously been found to be associated with photosynthetic pigmentation, whereas the species-level discriminatory waveband did not share this association. This suggests that the photosynthetic pigments were not spectrally diverse enough to successfully distinguish all eight species. We suggest that future work should investigate a Charge-Coupled Device (CCD)-based sensor using the wavebands highlighted above. This should facilitate the development of a regional-scale early-warning MAB detection system using UAVs, and help inform optimum sensor filter selection.

Evaluation of Polycyclic Aromatic Hydrocarbon Pollution From the HMS Royal Oak Shipwreck and Effects on Sediment Microbial Community Structure

Despite many shipwrecks containing oil there is a paucity of studies investigating their impact on surrounding environments. This study evaluates any potential effect the World War II shipwreck HMS Royal Oak is having on surrounding benthic sediments in Scapa Flow, Scotland. HMS (Her Majesty’s Ship) Royal Oak sank in 1939, subsequently leaked oil in the 1960s and 1990s, and is estimated to still hold 697 tonnes of fuel oil. In this study, sediments were analysed, over a 17.5 cm depth profile, along a 50–950 m cruciform transect away from the shipwreck. Analysis of polycyclic aromatic hydrocarbons (PAHs) revealed low concentrations (205.91 ± 50.15 μg kg‾¹ of dry sediment), which did not significantly differ with either distance from the shipwreck or sediment depth. PAH concentrations were well below the effects-range low (ERL) for the OSPAR (Oslo/Paris convention for the Protection of the Marine Environment of the North-East Atlantic) maritime area. The average Pyrogenic Index, in sediments around HMS Royal Oak, was 1.06 (±0.34), indicating PAHs were pyrogenic rather than petrogenic. Moreover, analysis of sediment microbiomes revealed no significant differences in bacterial community structure with distance from the shipwreck, with extremely low levels of obligate hydrocarbonoclastic bacteria (OHCB; 0.21% ± 0.54%). Both lines of evidence suggest that sampled sediments are not currently being impacted by petrogenic hydrocarbons and show no long-term impact by previous oil-spills from HMS Royal Oa

A Review of the Tools Used for Marine Monitoring in the UK: Combining Historic and Contemporary Methods with Modeling and Socioeconomics to Fulfill Legislative Needs and Scientific Ambitions

Marine environmental monitoring is undertaken to provide evidence that environmental management targets are being met. Moreover, monitoring also provides context to marine science and over the last century has allowed development of a critical scientific understanding of the marine environment and the impacts that humans are having on it. The seas around the UK are currently monitored by targeted, impact-driven, programmes (e.g., fishery or pollution based monitoring) often using traditional techniques, many of which have not changed significantly since the early 1900s. The advent of a new wave of automated technology, in combination with changing political and economic circumstances, means that there is currently a strong drive to move toward a more refined, efficient, and effective way of monitoring. We describe the policy and scientific rationale for monitoring our seas, alongside a comprehensive description of the types of equipment and methodology currently used and the technologies that are likely to be used in the future. We contextualize the way new technologies and methodologies may impact monitoring and discuss how whole ecosystems models can give an integrated, comprehensive approach to impact assessment. Furthermore, we discuss how an understanding of the value of each data point is crucial to assess the true costs and benefits to society of a marine monitoring programme

Para-infectious brain injury in COVID-19 persists at follow-up despite attenuated cytokine and autoantibody responses

To understand neurological complications of COVID-19 better both acutely and for recovery, we measured markers of brain injury, inflammatory mediators, and autoantibodies in 203 hospitalised participants; 111 with acute sera (1–11 days post-admission) and 92 convalescent sera (56 with COVID-19-associated neurological diagnoses). Here we show that compared to 60 uninfected controls, tTau, GFAP, NfL, and UCH-L1 are increased with COVID-19 infection at acute timepoints and NfL and GFAP are significantly higher in participants with neurological complications. Inflammatory mediators (IL-6, IL-12p40, HGF, M-CSF, CCL2, and IL-1RA) are associated with both altered consciousness and markers of brain injury. Autoantibodies are more common in COVID-19 than controls and some (including against MYL7, UCH-L1, and GRIN3B) are more frequent with altered consciousness. Additionally, convalescent participants with neurological complications show elevated GFAP and NfL, unrelated to attenuated systemic inflammatory mediators and to autoantibody responses. Overall, neurological complications of COVID-19 are associated with evidence of neuroglial injury in both acute and late disease and these correlate with dysregulated innate and adaptive immune responses acutely

First record of Streptosyllis nunezi Faulwetter et al., 2008 (Annelida, Syllidae) from the United Kingdom, and amendment to the genus Streptosyllis Webster & Benedict, 1884

During a benthic survey of a Marine Conservation Zone located on the Skerries Bank in the English Channel off the south-west coast of England, three specimens of Streptosyllis nunezi Faulwetter et al., 2008 were found. This is the second ever record of the species after its original description, and the first record from waters around the U.K. and a significant northerly range extension for a species previously only recorded from the Canary Islands and the Mediterranean Sea. A single simple ventral chaeta in each of the two posterior-most segments was discovered in this and two other species of Streptosyllis Webster & Benedict, 1884. The generic definition of Streptosyllis is emended to include this feature previously unknown for the genus, and an updated key to the Streptosyllis found in UK waters is provided

Distolambrus maltzami (Miers, 1881) (Brachyura: Parthenopidae) with observed and modelled distribution in the North-east Atlantic

We present the distribution of the parthenopid crab species Distolambrus maltzami from the North-east Atlantic with a first record from UK seas. The distribution of D. maltzami in the Celtic-Biscay area in the eastern Atlantic, is both described based on recent records from survey data and estimated from modelling its environmental niche. The predicted probability of occurrence is greatest in areas with fluctuating tidal currents and water masses that are rich in chlorophyll-a, cold (minimum bottom temperature lower than 10°C) and oxygen-rich. We include a simple key to distinguish the two parthenopid crab species previously encountered in the region and highlight the importance of a multidisciplinary approach to fisheries data collection