A fast supervised density-based discretization algorithm for classification tasks in the medical domain

Discretization is a preprocessing technique used for converting continuous features into categorical. This step is essential for processing algorithms that cannot handle continuous data as input. In addition, in the big data era, it is important for a discretizer to be able to efficiently discretize data. In this paper, a new supervised density-based discretization (DBAD) algorithm is proposed, which satisfies these requirements. For the evaluation of the algorithm, 11 datasets that cover a wide range of datasets in the medical domain were used. The proposed algorithm was tested against three state-of-the art discretizers using three classifiers with different characteristics. A parallel version of the algorithm was evaluated using two synthetic big datasets. In the majority of the performed tests, the algorithm was found performing statistically similar or better than the other three discretization algorithms it was compared to. Additionally, the algorithm was faster than the other discretizers in all of the performed tests. Finally, the parallel version of DBAD shows almost linear speedup for a Message Passing Interface (MPI) implementation (9.64× for 10 nodes), while a hybrid MPI/OpenMP implementation improves execution time by 35.3× for 10 nodes and 6 threads per node.Peer ReviewedPostprint (published version

Emergency TeleOrthoPaedics m-health system for wireless communication links

For the first time, a complete wireless and mobile emergency TeleOrthoPaedics system with field trials and expert opinion is presented. The system enables doctors in a remote area to obtain a second opinion from doctors in the hospital using secured wireless telecommunication networks. Doctors can exchange securely medical images and video as well as other important data, and thus perform remote consultations, fast and accurately using a user friendly interface, via a reliable and secure telemedicine system of low cost. The quality of the transmitted compressed (JPEG2000) images was measured using different metrics and doctors opinions. The results have shown that all metrics were within acceptable limits. The performance of the system was evaluated successfully under different wireless communication links based on real data

Analysis of neuromuscular disorders using statistical and entropy metrics on surface EMG

This paper introduces the surface electromyogram (EMG) classification system based on statistical and entropy metrics. The system is intended for diagnostic use and enables classification of examined subject as normal, myopathic or neuropathic, regarding to the acquired EMG signals. 39 subjects in total participated in the experiment, 19 normal, 11 myopathic and 9 neuropathic. Surface EMG was recorded using 4-channel surface electrodes on the biceps brachii muscle at isometric voluntary contractions. The recording time was only 5 seconds long to avoid muscle fatigue, and contractions at fiveforce levels were performed, i.e. 10, 30, 50, 70 and 100 % of maximal voluntary contraction. The feature extraction routine deployed the wavelet transform and calculation of the Shannon entropy across all the scales in order to obtain a feature set for each subject. Subjects were classified regarding the extracted features using three machine learning techniques, i.e. decision trees, support vector machines and ensembles of support vector machines. Four 2-class classifications and a 3-class classification were performed. The scored classification rates were the following: 64+-11% for normal/abnormal, 74+-7% for normal/myopathic, 79+-8% for normal/neuropathic, 49+-20% for myopathic/neuropathic, and 63+-8% for normal/myopathic/neuropathic

Unsupervised level set parameterization using multi-scale filtering

This paper presents a novel framework for unsupervised level set parameterization using multi-scale filtering. A standard multi-scale, directional filtering algorithm is used in order to capture the orientation coherence in edge regions. The latter is encoded in entropy-based image `heatmaps', which are able to weight forces guiding level set evolution. Experiments are conducted on two large benchmark databases as well as on real proteomics images. The experimental results demonstrate that the proposed framework is capable of accelerating contour convergence, whereas it obtains a segmentation quality comparable to the one obtained with empirically optimized parameterization

A feasibility study for the provision of electronic healthcare tools and services in areas of Greece, Cyprus and Italy

Background: Through this paper, we present the initial steps for the creation of an integrated platform for the provision of a series of eHealth tools and services to both citizens and travelers in isolated areas of thesoutheast Mediterranean, and on board ships travelling across it. The platform was created through an INTERREG IIIB ARCHIMED project called INTERMED. Methods: The support of primary healthcare, home care and the continuous education of physicians are the three major issues that the proposed platform is trying to facilitate. The proposed system is based on state-of-the-art telemedicine systems and is able to provide the following healthcare services: i) Telecollaboration and teleconsultation services between remotely located healthcare providers, ii) telemedicine services in emergencies, iii) home telecare services for "at risk" citizens such as the elderly and patients with chronic diseases, and iv) eLearning services for the continuous training through seminars of both healthcare personnel (physicians, nurses etc) and persons supporting "at risk" citizens. These systems support data transmission over simple phone lines, internet connections, integrated services digital network/digital subscriber lines, satellite links, mobile networks (GPRS/3G), and wireless local area networks. The data corresponds, among others, to voice, vital biosignals, still medical images, video, and data used by eLearning applications. The proposed platform comprises several systems, each supporting different services. These were integrated using a common data storage and exchange scheme in order to achieve system interoperability in terms of software, language and national characteristics. Results: The platform has been installed and evaluated in different rural and urban sites in Greece, Cyprus and Italy. The evaluation was mainly related to technical issues and user satisfaction. The selected sites are, among others, rural health centers, ambulances, homes of "at-risk" citizens, and a ferry. Conclusions: The results proved the functionality and utilization of the platform in various rural places in Greece, Cyprus and Italy. However, further actions are needed to enable the local healthcare systems and the different population groups to be familiarized with, and use in their everyday lives, mature technological solutions for the provision of healthcare services

AM-FM Texture Image Analysis of the Intima and Media Layers of the Carotid Artery

Abstract. The purpose of this paper is to propose the use of amplitude modulation-frequency modulation (AM-FM) features for describing atherosclerotic plaque features that are associated with clinical factors such as intima media thickness and a patient's age. AM-FM analysis reveals the instantaneous amplitude (IA) of the media layer decreases with age. This decrease in IA maybe attributed to the reduction in calcified, stable plaque components and an increase in stroke risk with age. On the other hand, an increase in the median instantaneous frequency (IF) of the media layer suggests the fragmentation of solid, large plaque components, which also lead to an increase in the risk of stroke. The findings suggest that AM-FM features can be used to assess the risk of stroke over a wide range of patient populations. Future work will incorporate a new texture image retrieval system that uses AM-FM features to retrieve intima and intima media layer images that could be associated with the same level of the risk of stroke

A cross-sectional study of explainable machine learning in Alzheimer’s disease: diagnostic classification using MR radiomic features

IntroductionAlzheimer’s disease (AD) even nowadays remains a complex neurodegenerative disease and its diagnosis relies mainly on cognitive tests which have many limitations. On the other hand, qualitative imaging will not provide an early diagnosis because the radiologist will perceive brain atrophy on a late disease stage. Therefore, the main objective of this study is to investigate the necessity of quantitative imaging in the assessment of AD by using machine learning (ML) methods. Nowadays, ML methods are used to address high dimensional data, integrate data from different sources, model the etiological and clinical heterogeneity, and discover new biomarkers in the assessment of AD.MethodsIn this study radiomic features from both entorhinal cortex and hippocampus were extracted from 194 normal controls (NC), 284 mild cognitive impairment (MCI) and 130 AD subjects. Texture analysis evaluates statistical properties of the image intensities which might represent changes in MRI image pixel intensity due to the pathophysiology of a disease. Therefore, this quantitative method could detect smaller-scale changes of neurodegeneration. Then the radiomics signatures extracted by texture analysis and baseline neuropsychological scales, were used to build an XGBoost integrated model which has been trained and integrated.ResultsThe model was explained by using the Shapley values produced by the SHAP (SHapley Additive exPlanations) method. XGBoost produced a f1-score of 0.949, 0.818, and 0.810 between NC vs. AD, MC vs. MCI, and MCI vs. AD, respectively.DiscussionThese directions have the potential to help to the earlier diagnosis and to a better manage of the disease progression and therefore, develop novel treatment strategies. This study clearly showed the importance of explainable ML approach in the assessment of AD