Submergence times and abundance estimation of blue whales off Sri Lanka

Very little is known about the blue whale populations in the waters of Sri Lanka. A first attempt at estimating their relative abundances using DISTANCE sampling methods is currently underway in the waters off the southern coast of the island. Surfacing behavior was quantified from focal follows of individual blue whales between January and March 2011. Estimates of submergence times will be used for generating more precise abundance estimates. Individuals were followed from a 32-foot vessel to observe surfacing patterns and breathing behaviour in the presence and absence of whalewatching boats. Time at first surface, length of surface interval, number of blows and final dive time were collected. The data gathered was analysed using a hidden Markov model (HMM) to identify whether dive duration was uniform or whether dives could be classified using surface interval and submergence time. The preliminary results show that the whales performed two types of dives; ‘regular’ and ‘deep’ dives with Inter Breath Intervals (IBI) of 22.0s (SD=4.7) and 635.6s (SD=405.4) respectively. Blue Whales off southern Sri Lanka spend 75% of their time performing ‘regular’ dives. Accordingly; we estimated that their mean IBI was approximately 173s. These preliminary results obtained using HMM may provide a more accurate correction factor than that obtained from the raw data. This may refine estimates of whale density and abundance for the area

Daily timing of low tide drives seasonality in intertidal emersion mortality risk

Sea level exerts a fundamental influence on the intertidal zone, where organisms are subject to immersion and emersion at varying timescales and frequencies. While emersed, intertidal organisms are exposed to atmospheric stressors which show marked diurnal and seasonal variability, therefore the daily and seasonal timing of low water is a key determinant of survival and growth in this zone. Using the example of shallow coral reefs, the coincidence of emersion with selected stressors was investigated for eight locations around the Australian coastline. Hourly water levels (1992 – 2016) from a high-resolution sea level hindcast (http://sealevelx.ems.uwa.edu.au), were linked to maximum surface solar radiation data from the Copernicus ERA5 atmospheric model and minimum atmospheric temperature observations from the Australian Bureau of Meteorology to identify seasonal patterns and historical occurrence of coral emersion mortality risk. Local tidal characteristics were found to dictate the time of day when low water, and therefore emersion mortality risk occurs, varying on a seasonal and regional basis. In general, risk was found to be greatest during the Austral spring when mean sea levels are lowest and a phase change in solar tidal constituents occurs. For all Great Barrier Reef sites, low tide occurs close to midday during winter and midnight in the summer, which may be fundamental factor supporting the historical bio-geographical development of the reef. Interannual variability in emersion mortality risk was mostly driven by non-tidal factors, particularly along the West Coast where El Niño events are associated with lower mean sea levels. This paper highlights the importance of considering emersion history when assessing intertidal environments, including shallow coral reef platform habitats, where critical low water events intrinsically influence coral health and cover. The study addresses a fundamental knowledge gap in both the field of water level science and intertidal biology in relation to the daily timing of low tide, which varies predictably on a seasonal and regional basis

The effect of surface flooding on the physical-biogeochemical dynamics of a warm-core eddy off southeast Australia

Warm-core eddies (WCEs) formed from the East Australian Current (EAC) play an important role in the heat, mass and biogeochemical budgets of the western Tasman Sea. The development and separation of an EAC WCE during July-December 2008 was observed using remotely sensed temperature, ocean colour and sea-level elevation, three Argo floats, a shipboard CTD, a shelf mooring array and a 15-day deployment of a Slocum glider. The eddy formed from an EAC meander during the first half of 2008 and in late August had a ~275m deep surface mixed layer. In the two months before separation in early December, fresher and warmer EAC water flooded the top of the eddy, submerging the winter mixed layer. The rate of vertical transport due to submergence was estimated to be between 1 and 6Sv, at the time accounting for a significant fraction of the mean southward flow of the EAC. The core of the eddy had a surface chlorophyll a concentration of <0.4mgm-3 throughout the observations. A 20-40m thick pycnocline formed at the interface of the flooding surface waters and the submerged layer. Chlorophyll a concentration in the pycnocline ranged from 0.5 to 2mgm-3, with depth-integrated concentration ranging between 25 and 75mgm-2. The development of a sub-surface maximum suggests that flooding increased light levels in the pycnocline. Elevated levels of coloured dissolved organic matter in the submerged layer correspond to oxygen depletion, suggesting respiration of organic matter. A comparison is made with observations from WCEs in 1978 and 1997 in which, unusually, surface flooding did not occur, but solar heating stratified the top 50m. In the two eddies with surface capping, surface chlorophyll a concentrations were an order of magnitude higher than the 2008 flooded eddy, but depth-integrated chlorophyll a was similar. These findings suggest that EAC WCEs with relatively shallow surface flooding contain more phytoplankton biomass than surface images would suggest, with the vertical position of the chlorophyll a maximum depending on whether, and to what depth, the winter surface mixed layer is submerged. © 2010 Elsevier Ltd

Beach water table fluctuations due to wave run-up: capillarity effects

High-frequency beach water table fluctuations due to wave run-up and rundown have been observed in the field [Waddell, 1976]. Such fluctuations affect the infiltration/exfiltration process across the beach face and the interstitial oxygenation process in the beach ecosystem. Accurate representation of high-frequency water table fluctuations is of importance in the modeling of (1) the interaction between seawater and groundwater, more important, the effects on swash sediment transport and (2) the biological activities in the beach ecosystem. Capillarity effects provide a mechanism for high-frequency water table fluctuations. Previous modeling approaches adopted the assumption of saturated flow only and failed to predict the propagation of high-frequency fluctuations in the aquifer. In this paper we develop a modified kinematic boundary condition (kbc) for the water table which incorporates capillarity effects. The application of this kbc in a boundary element model enables the simulation of high-frequency water table fluctuations due to wave run-up. Numerical tests were carried out for a rectangular domain with small-amplitude oscillations; the behavior of water table responses was found to be similar to that predicted by an analytical solution based on the one-dimensional Boussinesq equation. The model was also applied to simulate the water table response to wave run-up on a doping beach. The results showed similar features of water table fluctuations observed in the field. In particular, these fluctuations are standing wave-like with the amplitude becoming increasingly damped inland. We conclude that the modified kbc presented here is a reasonable approximation of capillarity effects on beach water table fluctuations. However, further model validation is necessary before the model can confidently be used to simulate high-frequency water table fluctuations due to wave run-up

Tidal asymmetry and residual circulation over linear sandbanks and their implication on sediment transport : a process-oriented numerical study

Author Posting. © American Geophysical Union, 2007. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research 112 (2007): C12015, doi:10.1029/2007JC004101.A series of process-oriented numerical simulations is carried out in order to evaluate the relative role of locally generated residual flow and overtides on net sediment transport over linear sandbanks. The idealized bathymetry and forcing are similar to those present in the Norfolk Sandbanks, North Sea. The importance of bottom drag parameterization and bank orientation with respect to the ambient flow is examined in terms of residual flow and overtide generation, and subsequent sediment transport implications are discussed. The results show that although the magnitudes of residual flow and overtides are sensitive to bottom roughness parameterization and bank orientation, the magnitude of the generated residual flow is always larger than that of the locally generated overtides. Also, net sediment transport is always dominated by the nonlinear interaction of the residual flow and the semidiurnal tidal currents, although cross-bank sediment transport can occur even in the absence of a cross-shore residual flow. On the other hand, net sediment divergence/convergence increases as the bottom drag decreases and as bank orientation increases. The sediment erosion/deposition is not symmetric about the crest of the bank, suggesting that originally symmetric banks would have the tendency to become asymmetric.Funding for this work was provided by the U.S. Geological Survey as part of the SC Coastal Erosion Study and by the South Carolina Sea Grant Consortium (grant V169). Additional support for one of the authors (G. Voulgaris) was provided by the Office of Naval Research (Southeast Coastal Ocean Observing Systems) and by the National Science Foundation (award OCE-0451989)

A standardisation framework for bio‐logging data to advance ecological research and conservation

Bio‐logging data obtained by tagging animals are key to addressing global conservation challenges. However, the many thousands of existing bio‐logging datasets are not easily discoverable, universally comparable, nor readily accessible through existing repositories and across platforms, slowing down ecological research and effective management. A set of universal standards is needed to ensure discoverability, interoperability and effective translation of bio‐logging data into research and management recommendations. We propose a standardisation framework adhering to existing data principles (FAIR: Findable, Accessible, Interoperable and Reusable; and TRUST: Transparency, Responsibility, User focus, Sustainability and Technology) and involving the use of simple templates to create a data flow from manufacturers and researchers to compliant repositories, where automated procedures should be in place to prepare data availability into four standardised levels: (a) decoded raw data, (b) curated data, (c) interpolated data and (d) gridded data. Our framework allows for integration of simple tabular arrays (e.g. csv files) and creation of sharable and interoperable network Common Data Form (netCDF) files containing all the needed information for accuracy‐of‐use, rightful attribution (ensuring data providers keep ownership through the entire process) and data preservation security. We show the standardisation benefits for all stakeholders involved, and illustrate the application of our framework by focusing on marine animals and by providing examples of the workflow across all data levels, including filled templates and code to process data between levels, as well as templates to prepare netCDF files ready for sharing. Adoption of our framework will facilitate collection of Essential Ocean Variables (EOVs) in support of the Global Ocean Observing System (GOOS) and inter‐governmental assessments (e.g. the World Ocean Assessment), and will provide a starting point for broader efforts to establish interoperable bio‐logging data formats across all fields in animal ecology