Analysis of the unstable Tollmien--Schlichting mode on bodies with a rounded leading edge using the parabolized stability equation

The interaction between free-stream disturbances and the boundary layer on a body with a rounded leading edge is considered in this paper. A method which incorporates calculations using the parabolized stability equation in the Orr-Sommerfeld region, along with an upstream boundary condition derived from asymptotic theory in the vicinity of the leading edge, is generalized to bodies with an inviscid slip velocity which tends to a constant far downstream. We present results for the position of the lower branch neutral stability point and the magnitude of the unstable Tollmien-Schlichting (T-S) mode at this point for both a parabolic body and the Rankine body. For the Rankine body, which has an adverse pressure gradient along its surface far from the nose, we find a double maximum in the T-S wave amplitude for sufficiently large Reynolds numbers

Late Pleistocene marine sediments and fossils from Mussel Roe Bay, northeastern Tasmania

Foraminifera- and mollusc-bearing estuarine sediments were encountered in one of a series of auger holes drilled in Late Pleistocene interglacial sands at Mussel Roe Bay, northeastern Tasmania. It is proposed that the estuary formed behind a bay-mouth barrier similar to that presently occurring between Mussel Roe Bay and Great Mussel Roe Bay

Making the most of data-poor fisheries: low cost mapping of small island fisheries to inform policy

This is the author accepted manuscript. The final version is available from Elsevier via the DOI in this record.Data scarcity in small-scale fisheries hinders the effective management of marine resources. This is particularly true within small island developing states that often have limited capacity for monitoring activities that could inform policy decisions. This study estimates the spatial distribution of fishing activity in the data-poor nearshore reef fisheries of Barbados using low cost interview surveys of fishers combined with a geospatial platform. With data from over 150 fishers in the island's major reef fisheries, the estimated total annual yield ranged from 272.6 to 409.0 mt, with seine fishing accounting for 65% of landings. This estimate is substantially higher than the recorded landings in official databases. Fishing activity is concentrated on the sheltered and heavily populated West Coast of the island. Reef fishing effort decreases markedly during the months associated with the offshore pelagic fishery season, as many fishers switch fisheries during this time and rough sea conditions restrict access to the nearshore windward reefs. The high levels of fishing intensity and low yields per unit of reef area appear to validate anecdotal evidence that the nearshore reefs of Barbados are heavily overexploited. The qualitative nature of interview data and other data gaps hinder the precise estimation of fishing effort and yield, where relative values are likely to be more accurate than absolute values. Nonetheless, the spatially and temporally explicit data generated here demonstrates how simple cost-effective methods can be used to fill important information gaps for marine resource management and spatial planning.This work represents part of the research of the Future of Reefs in a Changing Environment (FORCE) project funded by the European Union 7th Framework programme (P7/2007–2013) under grant agreement No. 244161. This work was supported by the Centre for Resource Management and Environmental Studies (CERMES), University of the West Indies, Cave Hill Campus, Barbados

Variation at the capsule locus, cps, of mistyped and non-typable Streptococcus pneumoniae isolates

The capsule polysaccharide locus (cps) is the site of the capsule biosynthesis gene cluster in encapsulated Streptococcus pneumoniae. A set of pneumococcal samples and non-pneumococcal streptococci from Denmark, the Gambia, the Netherlands, Thailand, the UK and the USA were sequenced at the cps locus to elucidate serologically mistyped or non-typable isolates. We identified a novel serotype 33B/33C mosaic capsule cluster and previously unseen serotype 22F capsule genes, disrupted and deleted cps clusters, the presence of aliB and nspA genes that are unrelated to capsule production, and similar genes in the non-pneumococcal samples. These data provide greater understanding of diversity at a locus which is crucial to the antigenic diversity of the pathogen and current vaccine strategies

The secret of success

Parts of Antarctica have experienced warming almost an order of magnitude greater than the global average over the past 50 years, with the Antarctic Peninsula ranking among the three fastest-warming regions on Earth. Antarctic ecosystems have been affected by the warming that has taken place. Perhaps the most notable impact has been a dramatic expansion of the two species of flowering plant that occur on the continent \u2014 Antarctic pearlwort and Antarctic hair gras

Estimating the number needed to treat from continuous outcomes in randomised controlled trials: methodological challenges and worked example using data from the UK Back Pain Exercise and Manipulation (BEAM) trial

Background Reporting numbers needed to treat (NNT) improves interpretability of trial results. It is unusual that continuous outcomes are converted to numbers of individual responders to treatment (i.e., those who reach a particular threshold of change); and deteriorations prevented are only rarely considered. We consider how numbers needed to treat can be derived from continuous outcomes; illustrated with a worked example showing the methods and challenges. Methods We used data from the UK BEAM trial (n = 1, 334) of physical treatments for back pain; originally reported as showing, at best, small to moderate benefits. Participants were randomised to receive 'best care' in general practice, the comparator treatment, or one of three manual and/or exercise treatments: 'best care' plus manipulation, exercise, or manipulation followed by exercise. We used established consensus thresholds for improvement in Roland-Morris disability questionnaire scores at three and twelve months to derive NNTs for improvements and for benefits (improvements gained+deteriorations prevented). Results At three months, NNT estimates ranged from 5.1 (95% CI 3.4 to 10.7) to 9.0 (5.0 to 45.5) for exercise, 5.0 (3.4 to 9.8) to 5.4 (3.8 to 9.9) for manipulation, and 3.3 (2.5 to 4.9) to 4.8 (3.5 to 7.8) for manipulation followed by exercise. Corresponding between-group mean differences in the Roland-Morris disability questionnaire were 1.6 (0.8 to 2.3), 1.4 (0.6 to 2.1), and 1.9 (1.2 to 2.6) points. Conclusion In contrast to small mean differences originally reported, NNTs were small and could be attractive to clinicians, patients, and purchasers. NNTs can aid the interpretation of results of trials using continuous outcomes. Where possible, these should be reported alongside mean differences. Challenges remain in calculating NNTs for some continuous outcomes

The mRNA expression of SETD2 in human breast cancer: Correlation with clinico-athological parameters

BACKGROUND: SET domain containing protein 2 (SETD2) is a histone methyltransferase that is involved in transcriptional elongation. There is evidence that SETD2 interacts with p53 and selectively regulates its downstream genes. Therefore, it could be implicated in the process of carcinogenesis. Furthermore, this gene is located on the short arm of chromosome 3p and we previously demonstrated that the 3p21.31 region of chromosome 3 was associated with permanent growth arrest of breast cancer cells. This region includes closely related genes namely: MYL3, CCDC12, KIF9, KLHL18 and SETD2. Based on the biological function of these genes, SETD2 is the most likely gene to play a tumour suppressor role and explain our previous findings. Our objective was to determine, using quantitative PCR, whether the mRNA expression levels of SETD2 were consistent with a tumour suppressive function in breast cancer. This is the first study in the literature to examine the direct relationship between SETD2 and breast cancer. METHODS: A total of 153 samples were analysed. The levels of transcription of SETD2 were determined using quantitative PCR and normalized against (CK19). Transcript levels within breast cancer specimens were compared to normal background tissues and analyzed against conventional pathological parameters and clinical outcome over a 10 year follow-up period. RESULTS: The levels of SETD2 mRNA were significantly lower in malignant samples (p = 0.0345) and decreased with increasing tumour stage. SETD2 expression levels were significantly lower in samples from patients who developed metastasis, local recurrence, or died of breast cancer when compared to those who were disease free for > 10 years (p = 0.041). CONCLUSION: This study demonstrates a compelling trend for SETD2 transcription levels to be lower in cancerous tissues and in patients who developed progressive disease. These findings are consistent with a possible tumour suppressor function of this gene in breast cancer

Single clad coiled optical fibre for high power lasers and amplifiers

We demonstrate a new concept in development of high power fibre lasers based on single clad coiled fibres. Combination of a highly efficient Yb-doped fibre and glass-air waveguide for multi-point pump injection allows to reduce device length to less than 3

X-ray Absorption and Reflection in Active Galactic Nuclei

X-ray spectroscopy offers an opportunity to study the complex mixture of emitting and absorbing components in the circumnuclear regions of active galactic nuclei, and to learn about the accretion process that fuels AGN and the feedback of material to their host galaxies. We describe the spectral signatures that may be studied and review the X-ray spectra and spectral variability of active galaxies, concentrating on progress from recent Chandra, XMM-Newton and Suzaku data for local type 1 AGN. We describe the evidence for absorption covering a wide range of column densities, ionization and dynamics, and discuss the growing evidence for partial-covering absorption from data at energies > 10 keV. Such absorption can also explain the observed X-ray spectral curvature and variability in AGN at lower energies and is likely an important factor in shaping the observed properties of this class of source. Consideration of self-consistent models for local AGN indicates that X-ray spectra likely comprise a combination of absorption and reflection effects from material originating within a few light days of the black hole as well as on larger scales. It is likely that AGN X-ray spectra may be strongly affected by the presence of disk-wind outflows that are expected in systems with high accretion rates, and we describe models that attempt to predict the effects of radiative transfer through such winds, and discuss the prospects for new data to test and address these ideas.Comment: Accepted for publication in the Astronomy and Astrophysics Review. 58 pages, 9 figures. V2 has fixed an error in footnote