Catches in ghost-fishing octopus and fish traps in the northeastern Atlantic Ocean (Algarve, Portugal)

Ghost fishing is the term used to describe the continued capture of fish and other living organisms after a fisherman has lost all control over the gear. Traps may be lost for a variety of reasons including theft, vandalism, abandonment, interactions with other gear, fouling on the bottom (i.e., traps and ropes are caught on rocky substrate), bad weather, and human error (Laist, 1995). Annual trap loss can be as high as 20% to 50% of fished traps in some fisheries (Al-Masroori et al., 2004). Because lost traps can continue to fish for long periods, albeit with decreasing efficiency over time (e.g., Smolowitz, 1978; Breen, 1987, 1990; Guillory, 1993), ghost fishing is a concern in fisheries worldwide

The African hind's (Cephalopholis taeniops, serranidae) use of artificial reefs off Sal Island (Cape Verde): a preliminary study based on acoustic telemetry

The African hind Cephalopholis taeniops (Valenciennes, 1828) is one of the most important commercial demersal species caught in the Cape Verde archipelago. The species is closely associated with hard substrate and is one of the main attractions for SCUBA divers. In January 2006 a former Soviet fishing vessel - the Kwarcit - was sunk off Santa Maria Bay (Sal Island). Young C. taeniops are commonly observed in this artificial reef (AR). In order to investigate the species' use of the AR, 4 specimens were captured and surgically implanted underwater with Vemco brand acoustic transmitters. The fish were monitored daily with an active telemetry receiver for one week after release. Simultaneously, an array of 3 passive VR2 / VR2W receivers was set for 63 days, registering data that allowed an analysis of spatial, daily and short term temporal activity patterns. The results showed site fidelity to the AR, with no migrations to the nearby natural reef. The method used allowed to register a consistent higher activity during daytime and a preference for the area opposite the dominant current

Complementary sampling methods to improve the monitoring of Coastal Lagoons

Monitoring the ecological status of marine coastal lagoons requires the integration of multiple indices. However, the efficacy of monitoring programs is complicated by the diverse array of habitats that conform coastal lagoons. In this study, we compared four sampling methods (25-m and 50-m beach seines, beam trawl and Riley push net) in the Ria Formosa coastal lagoon (South Portugal) for assessing fish assemblage and diversity. We compared species richness and assemblage structure with species accumulation curves and multivariate analysis, and assessed diversity patterns using taxonomic, phylogenetic and functional diversity indices. Variation in fish assemblage structure was mostly explained by gear type, and almost all diversity metrics varied not only according to sampling method but also depending on habitat characteristics and season. Based on operational costs and diversity patterns captured by each gear, we conclude that the combined use of 25-m beach seine and beam trawl is the preferred approach. The proposed methodology will provide the data necessary for assessment of ecological status of coastal lagoons.info:eu-repo/semantics/publishedVersio

Age, growth and reproduction of the Axilary Seabream, "Pagellus acarne" (Risso, 1827), from the South coast of Portugal

Axillary seabream, Pagellus acarne, caught by longlines in the Algarve (Southern Portugal), were sampled between August 1995 and August 1996. Age was studied by counting growth increments on otoliths and the estimated von Bertalanffy parameters were Linf = 28.82 cm, K = 0.29 year-1 and t0 = -1.47 year for males and Linf = 32.30 cm, K = 0.18 year-1 and t0 = -2.56 year for females. Evidence of the annual periodicity of the deposition of increments was found by marginal increment analyses. Macroscopic analysis of the gonads and the gonad somatic index showed that reproduction occurred over an extensive period of time, from May to November. Lengths at first maturity were 18.10 and 17.60 cm for males and females, respectively. This species was characterized as being a protandric hermaphrodite.info:eu-repo/semantics/publishedVersio

Deep genetic differentiation in the little tunny from the Mediterranean and east Atlantic.

In this study we present the analysis of the stock structure of Little tunny (Euthynnus alletteratus) using the mitochondrial control region as a genetic marker. More than 500 individuals distributed in six locations were analyzed. Samples were from three main regions: Mediterranean (Tunisia and Spain), and northeast Atlantic (Portugal and Senegal) and southeast Atlantic (Côte d’Ivoire and Gabon). Deep genetic differences were found between these locations. The phylogenetic tree showed a complete reciprocal monophyly association of the individuals in two main regions: Portugal, Spain and Tunisia; and Senegal, Côte d’Ivoire and Gabon. The level of genetic differentiation between these two areas is similar to the differences found between species of the genus Euthynnus. These results suggest a scenario of having two species of Little tunny in its Mediterranean-Atlantic distribution. Further evidence with other non-linked genetic markers along morphological and meristic data is necessary to fully confirm these two putative species. However, based on these results a separate management unit can be considered: i) Northeast Atlantic/Mediterranean (Portugal, Spain and Tunisia), and ii) the northeast/Southeast Atlantic (Senegal, Côte d’Ivoire and Gabon). RÉSUMÉ Dans cette étude, nous présentons l'analyse de la structure du stock de la thonine commune (Euthynnus alletteratus) en utilisant la zone mitochondriale de contrôle comme marqueur génétique. Plus de 500 spécimens répartis sur six sites ont été analysés. Les échantillons provenaient de trois régions principales : Méditerranée (Tunisie et UE-Espagne), Atlantique Nord-Est (Portugal et Sénégal) et Atlantique Sud-Est (Côte d'Ivoire et Gabon). De profondes différences génétiques ont été constatées entre ces endroits. L'arbre phylogénétique affichait une association monophylique réciproque complète des spécimens dans deux régions principales : l’UE-Portugal, l’UE-Espagne et la Tunisie ; et le Sénégal, la Côte d'Ivoire et le Gabon. Le niveau de différenciation génétique entre ces deux régions est similaire aux différences constatées entre les espèces du genre Euthynnus. Ces résultats suggèrent un scénario de présence de deux espèces de thonidés mineurs dans sa distribution méditerranéenne-atlantique. Des preuves supplémentaires avec d'autres marqueurs génétiques non liés ainsi que des données morphologiques et méristiques sont nécessaires pour confirmer pleinement ces deux espèces supposées. Toutefois, sur la base de ces résultats, une unité de gestion distincte peut être envisagée : i) Atlantique Nord-Est/Méditerranée (UE-Portugal, UE-Espagne et Tunisie) et ii) Atlantique Nord-Est/Sud-Est (Sénégal, Côte d'Ivoire et Gabon). RESUMEN En este estudio presentamos el análisis de la estructura del stock de la bacoreta (Euthynnus alletteratus) utilizando la región de control mitocondrial como marcador genético. Se analizaron más de 500 ejemplares distribuidos en seis localizaciones. Las muestras procedían de tres regiones principales: Mediterráneo (Túnez y España), Atlántico nororiental (Portugal y Senegal) y Atlántico suroriental (Côte d'Ivoire y Gabón). Se hallaron profundas diferencias genéticas entre las tres localizaciones: El árbol filogenético presentaba una asociación monofilética recíproca completa de los ejemplares en dos regiones principales: Portugal, España y Túnez; y Senegal, Côte d'Ivoire y Gabón. El nivel de diferenciación genética entre estas dos zonas es similar a las diferencias halladas entre especies del género Euthynnus. Estos resultados sugieren un escenario con dos especies de bacoreta en su distribución atlántica-mediterránea. Son necesarias más pruebas con otros marcadores genéticos no vinculados con datos morfológicos y neríticos para confirmar más estas dos especies putativas. Sin embargo, en base a estos resultados, puede considerarse una unidad de ordenación separada: i) Atlántico nororiental/Mediterráneo (Portugal, España y Túnez) y ii) Atlántico suroriental/nororiental (Senegal, Côte d'Ivoire y Gabón).Versión del edito

Influence of seagrass meadows on nursery and fish provisioning ecosystem services delivered by Ria Formosa, a coastal lagoon in Portugal

This study is the first to evaluate the fish provisioning services of a whole transitional landscape (Ria Formosa lagoon, Portugal), in parallel with the enhancement of growth, survival and production of single cohorts of the most important commercial fish species by vegetated and unvegetated sub-tidal habitats. Based on monthly beach seine samples, total density and biomass of 96 species of fishes were 1.89 and 3.03 times greater in vegetated habitats than unvegetated habitats, respectively. Vegetated habitat enhanced survival in six of eight commercial species for which survival could be estimated in both habitats. The total production of all 12 commercially important species within vegetated habitat was approximately double that of unvegetated habitat, with production enhancement in 7 of 12 species ranging from 1.8 to 169-fold for the vegetated habitats. Within the lagoon, vegetated sub-tidal habitat covers an area 5-fold smaller than unvegetated habitat, yet it accounts for 27.1 % of fish production. Estimated total lifetime economic values of the single cohorts of the 12 commercial species were between 30 million and 59 million EUR. An exceptionally strong year class of the European seabass (Dicentrarchus labrax), a species with higher density and biomass in unvegetated habitat, accounts for the higher overall values per hectare for unvegetated habitat (Low natural mortality (M): EUR 32,844 ha-1; High M: EUR 16,751 ha-1) than for vegetated habitat (Low M: EUR 22,028 ha-1; High M: EUR 10,700 ha-1). These results highlight the enormous importance of temperate coastal lagoons as a nursery and source of recruits for coastal fisheries. Our evaluation of fish provisioning services based on data for individual cohorts of fish for a whole transitional landscape is a stronger and more valid approach for estimating future biomass and value than previous studies based on mean densities and biomasses of fish that did not distinguish between cohorts.ICTIORIA (Recruitment of sea breams) DG XIV C1/99/061; LA/P/0101/2020;info:eu-repo/semantics/publishedVersio

Biological aspects of little tunny Euthynnus alletteratus from Spanish and Portuguese waters.

This study provides information on some biological aspects of Euthynnus alletteratus from the western Mediterranean (Spanish coast) and in the Atlantic Ocean (south of Iberian Peninsula). A total of 1266 individuals were measured between 2003 and 2017. The L-W relationship was calculated with W equal to 0.01242 FL3.058 . Histological analysis of the ovaries and the monthly variation of the gonadosomatic index for both sexes suggested that the spawning season for Euthynnus alletteratus in the western Mediterranean Sea takes place from June to August. The lengths at first maturity (L50) were estimated to be 50.1 cm and 43.4 cm FL for female and male, respectively. Age at first maturity (A50) was calculated

Local indicators for global species: Pelagic sharks in the tropical northeast Atlantic, Cabo Verde islands region

Pelagic sharks are an important bycatch in pelagic fisheries, especially for drifting longlines targeting swordfish. In the Cabo Verde Archipelago (tropical NE Atlantic), pelagic shark catches can reach a significant proportion of the total catches. Due to the increased concern on the status of pelagic shark species, this study was developed to enhance the current knowledge of those sharks in the Cabo Verde region in comparison to the adjacent areas, especially associated with European Union (EU) pelagic longline fishing activity. Stock status indicators for the two main species, blue shark (Prionace glauca) and shortfin mako (Isurus oxyrinchus), were developed, based on fisheries data from logbooks and onboard scientific observers, including analysis of size frequency distributions and standardized catch-per-unit-of-effort (CPUE) indexes over time. The standardized CPUEs have been stable or increasing for both species in the past 10 years, indicating no signs of local depletion. In terms of sizes, the blue shark catch is composed mainly of adults, which can be a sign of a stable population. On the contrary, the catch of shortfin mako is composed mainly of juveniles, which in conjunction of a decrease of mean size might be a cause of concern, highlighting possible overfishing on the species in the region. Thirty satellite tags, 25 archival miniPATs and 5 SPOT GPS, were deployed in the Cabo Verde Exclusive Economic Zone (EEZ), showing that those species are highly mobile. The biomass and size distributions were modeled with spatial and seasonal models (GAMs) identifying locations where juveniles are predominantly concentrated and that should be prioritized for conservation. This work presents new information on the status of pelagic sharks in the Cabo Verde region in the context of those highly migratory species, and can now be used to promote more sustainable fisheries in the region.FCT IF/00253/2014, SFRH/BD/136074/2018, SFRH/BD/139187/2018, EU/MARE/2012/21: “Scientific advice for fisheries beyond EU waters”, specifically within Specific Contract N° 7: “The provision of advice on the conservation of pelagic sharks associated to fishing activity under EU Sustainable Fisheries Partnership Agreements in the Atlantic Ocean”.info:eu-repo/semantics/publishedVersio

Final report of the short-term contract for ICCAT SMYTP for the biological samples collection for growth, maturity and genetics studies – Year #2

This document is the final report of the second year of the short-term contract of the Small Tuna Year Program by ICCAT. In 2018, the Small Tuna Species Group decided to prioritize Little tunny (LTA) (Euthynnus alletteratus) Atlantic bonito (BON) (Sarda sarda) and Wahoo (WAH) (Acanthocybium solandri), based on their economic importance and the deficiency of knowledge of their biology. The objectives of the contract for three species were: i) Collect biological samples for estimating growth parameters, assessing the maturity and stock structure analysis (populations genetics), and ii) Conclude the analysis of the stock structure for at least one of the three species and provide preliminary results for the remaining. The obtained samples for growth, maturity and stock structure analysis was almost completed for Little tunny and Atlantic bonito, whereas for Wahoo the samples are scarce. The analysis of stock structure for Little tunny and Atlantic bonito revealed that the observed dif