5,518 research outputs found
The blocks of the Brauer algebra in characteristic zero
We determine the blocks of the Brauer algebra in characteristic zero. We also give information on the submodule structure of standard modules for this algebra
Exopolymeric substances (EPS) from Bacillus subtilis: polymers and genes encoding their synthesis
Bacterial exopolymeric substances (EPS) are molecules released in response to the physiological stress encountered in the natural environment. EPS are structural components of the extracellular matrix in which cells are embedded during biofilm development. The chemical nature and functions of these EPS are dependent on the genetic expression of the cells within each biofilm. Although some bacterial matrices have been characterized, understanding of the function of the EPS is relatively limited, particularly within the Bacillus genus. Similar gaps of knowledge exist with respect to the chemical composition and specific roles of the macromolecules secreted by Bacillus subtilis in its natural environment. In this review, the different EPS from B. subtilis were classified into four main functional categories: structural (neutral polymers), sorptive (charged polymers), surface-active and active polymers. In addition, current information regarding the genetic expression, production and function of the main polymers secreted by B. subtilis strains, particularly those related to biofilm formation and its architecture, has been compiled. Further characterization of these EPS from B. subtilis remains a challenge
Quantitative genetics of disease traits
John James authored two key papers on the theory of risk to relatives for binary disease traits and the relationship between parameters on the observed binary scale and an unobserved scale of liability (James Annals of Human Genetics, 1971; 35: 47; Reich, James and Morris Annals of Human Genetics, 1972; 36: 163). These two papers are John James' most cited papers (198 and 328 citations, November 2014). They have been influential in human genetics and have recently gained renewed popularity because of their relevance to the estimation of quantitative genetics parameters for disease traits using SNP data. In this review, we summarize the two early papers and put them into context. We show recent extensions of the theory for ascertained case-control data and review recent applications in human genetics
Estimation of linkage disequilibrium in a sample of the United Kingdom dairy cattle population using unphased genotypes
The association between genetic marker alleles was estimated for two regions of the bovine genome from a random sample of 50 young dairy bulls born in the United Kingdom between 1988 and 1995. Microsatellite marker genotypes were obtained for six markers on chromosome 2 and seven markers on chromosome 6, spanning 38 and 20 cM, respectively. Two different methods, which do not require family information, were used to estimate population haplotype frequencies. Haplotype frequencies were estimated for pairs of loci using the expectation-maximization algorithm and for all linked loci using a Bayesian approach via a Markov chain-Monte Carlo algorithm. Significant (P = 0.0007) linkage disequilibrium was detected between pairs of loci in syntenic groups (that is, loci in the same linkage group), extending to about 10 cM. No significant linkage disequilibrium was detected between markers in nonsyntenic regions. Given the observed level of linkage disequilibrium, mapping methods based on population-wide association might provide a better resolution than traditional quantitative trait loci mapping methods in the U.K. dairy cattle population and may reduce the required sample sizes of the experiments
Spin-torque switching: Fokker-Planck rate calculation
We describe a new approach to understanding and calculating magnetization
switching rates and noise in the recently observed phenomenon of "spin-torque
switching". In this phenomenon, which has possible applications to information
storage, a large current passing from a pinned ferromagnetic (FM) layer to a
free FM layer switches the free layer. Our main result is that the spin-torque
effect increases the Arrhenius factor in the switching rate, not
by lowering the barrier , but by raising the effective spin temperature .
To calculate this effect quantitatively, we extend Kramers' 1940 treatment of
reaction rates, deriving and solving a Fokker-Planck equation for the energy
distribution including a current-induced spin torque of the Slonczewski type.
This method can be used to calculate slow switching rates without long-time
simulations; in this Letter we calculate rates for telegraph noise that are in
good qualitative agreement with recent experiments. The method also allows the
calculation of current-induced magnetic noise in CPP (current perpendicular to
plane) spin valve read heads.Comment: 11 pages, 8 figures, 1 appendix Original version in Nature format,
replaced by Phys. Rev. Letters format. No substantive change
Physiological requirements for carbonate precipitation during biofilm development of Bacillus subtilis etfA mutant
Although the implications of calcium carbonate (CaCO(3)) precipitation by microorganisms in natural environments are quite relevant, the physiology and genetics of this phenomenon are poorly understood. We have chosen Bacillus subtilis 168 as our model to study which physiological aspects are associated with CaCO(3) (calcite) formation during biofilm development when grown on precipitation medium. A B. subtilis eftA mutant named FBC5 impaired in calcite precipitation was used for comparative studies. Our results demonstrate that inactivation of etfA causes a decrease in the pH of the precipitation medium during biofilm development. Further analysis demonstrated that eftA extrudes an excess of 0.7 mol H(+) L(-1) with respect to B. subtilis 168 strain. Using media buffered at different pH values, we were able to control calcite formation. Because etfA encodes the alpha-subunit of a putative flavoprotein involved in fatty acid metabolism, we compared the intracellular levels of NADH among strains. Our physiological assay showed that FBC5 accumulated up to 32 times more NADH than the wild-type strain. We propose that the accumulation of NADH causes a deregulation in the generation of the proton motive force (DeltamicroH(+)) in FBC5 producing the acidification
New Developments in MadGraph/MadEvent
We here present some recent developments of MadGraph/MadEvent since the
latest published version, 4.0. These developments include: Jet matching with
Pythia parton showers for both Standard Model and Beyond the Standard Model
processes, decay chain functionality, decay width calculation and decay
simulation, process generation for the Grid, a package for calculation of
quarkonium amplitudes, calculation of Matrix Element weights for experimental
events, automatic dipole subtraction for next-to-leading order calculations,
and an interface to FeynRules, a package for automatic calculation of Feynman
rules and model files from the Lagrangian of any New Physics model.Comment: 6 pages, 3 figures. Plenary talk given at SUSY08, Seoul, South Korea,
June 2008. To appear in the proceeding
Is Random Close Packing of Spheres Well Defined?
Despite its long history, there are many fundamental issues concerning random
packings of spheres that remain elusive, including a precise definition of
random close packing (RCP). We argue that the current picture of RCP cannot be
made mathematically precise and support this conclusion via a molecular
dynamics study of hard spheres using the Lubachevsky-Stillinger compression
algorithm. We suggest that this impasse can be broken by introducing the new
concept of a maximally random jammed state, which can be made precise.Comment: 6 pages total, 2 figure
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